Wall clock time and date at job start Mon Mar 30 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48498 * 109.47617 * 269.99937 * 3 2 1 5 5 H 1.48506 * 109.47116 * 30.00195 * 3 2 1 6 6 H 1.48504 * 109.47027 * 149.99699 * 3 2 1 7 7 C 1.37872 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99999 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46672 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99340 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46931 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 64.99951 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47934 * 54.99967 * 15 14 13 17 17 C 1.52952 * 109.47416 * 294.98925 * 15 14 13 18 18 C 1.52950 * 109.81772 * 177.02301 * 17 15 14 19 19 C 1.53173 * 109.45330 * 62.98310 * 18 17 15 20 20 C 1.53151 * 108.88545 * 303.42920 * 19 18 17 21 21 C 1.52807 * 117.75529 * 199.63808 * 20 19 18 22 22 C 1.52846 * 117.67239 * 268.52137 * 20 19 18 23 23 C 1.53152 * 115.00472 * 53.94199 * 20 19 18 24 24 H 0.97000 * 119.99603 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47072 * 60.00125 * 9 7 2 26 26 H 1.08996 * 109.47124 * 299.99684 * 9 7 2 27 27 H 1.08996 * 109.47237 * 60.00538 * 11 10 9 28 28 H 1.09000 * 109.47615 * 299.99847 * 11 10 9 29 29 H 1.09004 * 109.46889 * 305.00332 * 12 11 10 30 30 H 1.08995 * 109.47384 * 184.99972 * 12 11 10 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.08996 * 109.41698 * 297.12643 * 17 15 14 35 35 H 1.08996 * 109.41325 * 56.91504 * 17 15 14 36 36 H 1.09003 * 109.47077 * 302.98779 * 18 17 15 37 37 H 1.09002 * 109.47472 * 182.98179 * 18 17 15 38 38 H 1.09001 * 109.56977 * 183.60462 * 19 18 17 39 39 H 1.09000 * 109.56835 * 63.24958 * 19 18 17 40 40 H 1.08998 * 117.49881 * 215.10346 * 21 20 19 41 41 H 1.09002 * 117.49624 * 0.14049 * 21 20 19 42 42 H 1.09000 * 117.50423 * 359.71877 * 22 20 19 43 43 H 1.09004 * 117.50263 * 144.77008 * 22 20 19 44 44 H 1.08994 * 109.57050 * 186.24016 * 23 20 19 45 45 H 1.09002 * 109.57047 * 65.87567 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5649 -4.8754 -0.0019 12 6 2.6478 -5.9562 -0.0023 13 7 3.4079 -5.8883 1.2530 14 6 4.4594 -6.9136 1.2880 15 6 5.2270 -6.8120 2.6075 16 1 4.5276 -6.8782 3.4409 17 6 5.9651 -5.4737 2.6663 18 6 6.6753 -5.3319 4.0134 19 6 7.7346 -6.4298 4.1497 20 6 7.0590 -7.7940 3.9823 21 6 7.7925 -9.0221 4.5196 22 6 6.5512 -8.4941 5.2425 23 6 6.2399 -7.9576 2.6986 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 0.9452 -4.9823 -0.8922 28 1 0.9444 -4.9826 0.8877 29 1 3.3215 -5.7954 -0.8440 30 1 2.1819 -6.9375 -0.0922 31 1 3.7965 -4.9674 1.3910 32 1 4.0062 -7.9016 1.2067 33 1 5.1454 -6.7589 0.4552 34 1 6.7004 -5.4298 1.8628 35 1 5.2499 -4.6599 2.5463 36 1 5.9477 -5.4268 4.8195 37 1 7.1551 -4.3548 4.0703 38 1 8.1977 -6.3702 5.1347 39 1 8.4945 -6.3017 3.3788 40 1 7.6920 -9.9527 3.9611 41 1 8.7592 -8.8620 4.9971 42 1 6.7014 -7.9867 6.1954 43 1 5.6341 -9.0774 5.1595 44 1 5.7118 -8.9108 2.7214 45 1 6.9044 -7.9268 1.8351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695676782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:29 Heat of formation + Delta-G solvation = -56.217164 kcal Electronic energy + Delta-G solvation = -20373.644020 eV Core-core repulsion = 17390.335676 eV Total energy + Delta-G solvation = -2983.308344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.71294 -37.30811 -36.11866 -34.18841 -32.69686 -31.62208 -28.79560 -27.48615 -26.70245 -24.45058 -22.72680 -22.35881 -22.15646 -21.24394 -20.19752 -18.77666 -16.45876 -15.98806 -15.68502 -15.48137 -15.28267 -14.98534 -14.39423 -14.28354 -13.97041 -13.68947 -13.38873 -13.19949 -12.81030 -12.65188 -12.06111 -11.90082 -11.74826 -11.69508 -11.52669 -11.24354 -11.10061 -11.02660 -10.81475 -10.74691 -10.70201 -10.50766 -10.14241 -10.04867 -9.95695 -9.62077 -9.09676 -8.81232 -8.16108 -8.14715 -6.10092 -4.11857 3.30522 3.35516 3.40689 3.55989 4.28498 4.35600 4.48406 4.55515 4.70591 4.77354 4.95408 4.98220 5.03541 5.22719 5.24092 5.26358 5.40186 5.41912 5.43485 5.52573 5.61736 5.68859 5.69886 5.70634 5.77159 5.84734 5.88069 5.90931 5.93218 6.09234 6.15352 6.15776 6.22435 6.26212 6.34773 6.37818 6.48060 7.12960 7.28892 7.45491 7.71450 7.79834 8.16455 8.59188 9.01370 9.52961 11.01474 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.003370 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.499874 B = 8306.058298 C = 9208.611265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.400 6.400 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.688 5.688 14 C 0.062 3.938 15 C -0.080 4.080 16 H 0.080 0.920 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.180 4.180 22 C -0.174 4.174 23 C -0.074 4.074 24 H 0.264 0.736 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.355 0.645 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.391 -17.373 7.238 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.016 4.016 12 C -0.064 4.064 13 N -0.322 5.322 14 C -0.067 4.067 15 C -0.099 4.099 16 H 0.098 0.902 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.217 4.217 22 C -0.211 4.211 23 C -0.112 4.112 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.176 0.824 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.971 -17.583 7.581 23.128 hybrid contribution 0.609 1.157 -0.651 1.461 sum 13.580 -16.426 6.930 22.411 Atomic orbital electron populations 1.69968 1.06103 1.27131 1.50562 1.24952 0.94976 0.99429 0.95182 0.86344 0.79677 0.82314 0.78193 1.20510 1.21070 1.19620 1.21052 0.93988 0.89418 1.50786 0.91636 1.20173 0.88708 0.83465 0.95372 1.87784 1.35790 1.13153 1.95232 1.22299 0.94570 0.85270 0.99471 1.21940 0.95870 0.97939 0.90628 1.60522 1.27062 1.09337 1.35265 1.21973 0.92471 0.96229 0.96045 1.21128 0.96154 0.94503 0.98129 0.90186 1.21582 0.99331 0.97501 0.97175 1.21484 0.97888 0.97877 0.97986 1.21156 0.97322 0.92171 1.01205 1.21470 1.01799 0.93267 0.95148 1.22987 0.96464 0.97884 1.04393 1.23008 0.97995 1.03916 0.96188 1.21150 0.96550 0.98188 0.95323 0.92663 0.97849 0.97616 0.94223 0.93570 0.94913 0.90823 0.82414 0.91582 0.95618 0.92339 0.91063 0.91797 0.91933 0.92178 0.91699 0.89048 0.89100 0.89041 0.88916 0.91952 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -15.22 9.43 -34.44 -0.32 -15.54 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.20 5.47 5.69 36.01 0.20 5.67 16 10 O -0.40 -9.65 9.85 -35.23 -0.35 -10.00 16 11 C 0.06 1.18 6.28 37.16 0.23 1.41 16 12 C 0.07 1.02 6.11 -3.82 -0.02 1.00 16 13 N -0.69 -10.46 6.50 -113.78 -0.74 -11.20 16 14 C 0.06 0.76 5.15 -3.82 -0.02 0.74 16 15 C -0.08 -0.88 2.40 -90.55 -0.22 -1.10 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.12 -1.36 4.94 -26.78 -0.13 -1.49 16 18 C -0.11 -1.18 5.93 -26.67 -0.16 -1.34 16 19 C -0.08 -0.74 5.67 -26.56 -0.15 -0.89 16 20 C -0.12 -1.05 1.97 -154.53 -0.31 -1.35 16 21 C -0.18 -1.43 9.99 -26.81 -0.27 -1.70 16 22 C -0.17 -1.47 9.93 -26.79 -0.27 -1.74 16 23 C -0.07 -0.70 4.96 -26.56 -0.13 -0.83 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.36 5.99 6.48 -39.29 -0.25 5.73 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -30.28 356.29 -10.25 -40.53 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.59 Total: 0.40 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.66 Total: -15.63 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.00 Total: -37.57 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.35 Total: -10.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.28 -10.25 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695676782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.687 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds