Wall clock time and date at job start Mon Mar 30 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48498 * 109.47617 * 269.99937 * 3 2 1 5 5 H 1.48506 * 109.47116 * 30.00195 * 3 2 1 6 6 H 1.48504 * 109.47027 * 149.99699 * 3 2 1 7 7 C 1.37872 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99999 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46672 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99340 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46931 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 64.99951 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47934 * 54.99967 * 15 14 13 17 17 C 1.52952 * 109.47416 * 294.98925 * 15 14 13 18 18 C 1.52950 * 109.81772 * 177.02301 * 17 15 14 19 19 C 1.53173 * 109.45330 * 62.98310 * 18 17 15 20 20 C 1.53151 * 108.88545 * 303.42920 * 19 18 17 21 21 C 1.52807 * 117.75529 * 199.63808 * 20 19 18 22 22 C 1.52846 * 117.67239 * 268.52137 * 20 19 18 23 23 C 1.53152 * 115.00472 * 53.94199 * 20 19 18 24 24 H 0.97000 * 119.99603 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47072 * 60.00125 * 9 7 2 26 26 H 1.08996 * 109.47124 * 299.99684 * 9 7 2 27 27 H 1.08996 * 109.47237 * 60.00538 * 11 10 9 28 28 H 1.09000 * 109.47615 * 299.99847 * 11 10 9 29 29 H 1.09004 * 109.46889 * 305.00332 * 12 11 10 30 30 H 1.08995 * 109.47384 * 184.99972 * 12 11 10 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.08996 * 109.41698 * 297.12643 * 17 15 14 35 35 H 1.08996 * 109.41325 * 56.91504 * 17 15 14 36 36 H 1.09003 * 109.47077 * 302.98779 * 18 17 15 37 37 H 1.09002 * 109.47472 * 182.98179 * 18 17 15 38 38 H 1.09001 * 109.56977 * 183.60462 * 19 18 17 39 39 H 1.09000 * 109.56835 * 63.24958 * 19 18 17 40 40 H 1.08998 * 117.49881 * 215.10346 * 21 20 19 41 41 H 1.09002 * 117.49624 * 0.14049 * 21 20 19 42 42 H 1.09000 * 117.50423 * 359.71877 * 22 20 19 43 43 H 1.09004 * 117.50263 * 144.77008 * 22 20 19 44 44 H 1.08994 * 109.57050 * 186.24016 * 23 20 19 45 45 H 1.09002 * 109.57047 * 65.87567 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5649 -4.8754 -0.0019 12 6 2.6478 -5.9562 -0.0023 13 7 3.4079 -5.8883 1.2530 14 6 4.4594 -6.9136 1.2880 15 6 5.2270 -6.8120 2.6075 16 1 4.5276 -6.8782 3.4409 17 6 5.9651 -5.4737 2.6663 18 6 6.6753 -5.3319 4.0134 19 6 7.7346 -6.4298 4.1497 20 6 7.0590 -7.7940 3.9823 21 6 7.7925 -9.0221 4.5196 22 6 6.5512 -8.4941 5.2425 23 6 6.2399 -7.9576 2.6986 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 0.9452 -4.9823 -0.8922 28 1 0.9444 -4.9826 0.8877 29 1 3.3215 -5.7954 -0.8440 30 1 2.1819 -6.9375 -0.0922 31 1 3.7965 -4.9674 1.3910 32 1 4.0062 -7.9016 1.2067 33 1 5.1454 -6.7589 0.4552 34 1 6.7004 -5.4298 1.8628 35 1 5.2499 -4.6599 2.5463 36 1 5.9477 -5.4268 4.8195 37 1 7.1551 -4.3548 4.0703 38 1 8.1977 -6.3702 5.1347 39 1 8.4945 -6.3017 3.3788 40 1 7.6920 -9.9527 3.9611 41 1 8.7592 -8.8620 4.9971 42 1 6.7014 -7.9867 6.1954 43 1 5.6341 -9.0774 5.1595 44 1 5.7118 -8.9108 2.7214 45 1 6.9044 -7.9268 1.8351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695676782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:28 Heat of formation + Delta-G solvation = -73.696551 kcal Electronic energy + Delta-G solvation = -20374.401983 eV Core-core repulsion = 17390.335676 eV Total energy + Delta-G solvation = -2984.066307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49430 -38.90004 -37.35715 -35.34535 -34.75237 -32.63505 -30.28036 -28.81882 -28.13426 -25.53853 -24.52448 -23.39747 -23.01682 -22.60365 -21.08854 -19.53218 -18.65140 -17.57316 -16.96902 -16.66770 -16.48558 -16.24344 -15.97761 -15.43803 -15.20048 -14.81373 -14.68277 -14.32134 -14.03637 -13.58853 -13.44703 -13.29707 -13.15341 -12.78429 -12.67949 -12.52086 -12.45068 -12.35678 -12.24899 -11.98643 -11.84117 -11.83179 -11.53027 -11.28812 -10.95584 -10.86932 -10.75580 -10.35780 -10.24227 -9.34149 -8.32883 -6.45488 1.39466 1.42446 1.54492 2.34052 2.88622 3.00974 3.19722 3.25687 3.69497 3.77722 3.93425 4.03512 4.11001 4.20701 4.26112 4.33350 4.41892 4.42499 4.52284 4.57816 4.63661 4.70448 4.76291 4.83359 4.84130 4.86217 4.90497 4.95723 5.01438 5.08334 5.08864 5.11405 5.17220 5.29887 5.33401 5.34670 5.41098 5.49444 5.53853 5.58467 5.94730 6.13993 6.41250 6.52226 6.80512 7.26468 8.79598 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.003370 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.499874 B = 8306.058298 C = 9208.611265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.074 3.926 13 N -0.699 5.699 14 C 0.064 3.936 15 C -0.073 4.073 16 H 0.067 0.933 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.169 4.169 22 C -0.178 4.178 23 C -0.069 4.069 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.016 1.016 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.104 0.896 31 H 0.342 0.658 32 H 0.080 0.920 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.910 -17.969 7.404 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.329 6.329 11 C -0.024 4.024 12 C -0.055 4.055 13 N -0.331 5.331 14 C -0.064 4.064 15 C -0.091 4.091 16 H 0.085 0.915 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.115 4.115 20 C -0.129 4.129 21 C -0.206 4.206 22 C -0.215 4.215 23 C -0.106 4.106 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.491 -18.218 7.746 24.534 hybrid contribution 0.086 1.260 -0.695 1.441 sum 14.577 -16.959 7.051 23.448 Atomic orbital electron populations 1.70078 1.07807 1.28666 1.50501 1.25984 0.95973 1.03462 0.93912 0.85172 0.78386 0.76947 0.78841 1.19262 1.19932 1.18776 1.21383 0.94097 0.90797 1.52232 0.91940 1.19794 0.88580 0.84650 0.93354 1.87751 1.35555 1.14380 1.95212 1.22617 0.96141 0.83893 0.99707 1.21914 0.94977 0.97747 0.90831 1.60576 1.28238 1.09318 1.35008 1.22046 0.91916 0.95777 0.96700 1.21036 0.96164 0.94962 0.96972 0.91470 1.21549 0.98883 0.97060 0.97995 1.21458 0.98087 0.98610 0.96917 1.21124 0.96836 0.91729 1.01801 1.21470 1.02530 0.93695 0.95180 1.23047 0.96516 0.97424 1.03638 1.23055 0.98461 1.03962 0.96056 1.21094 0.96153 0.97584 0.95814 0.92032 0.99713 0.99818 0.93308 0.93957 0.95001 0.87747 0.83862 0.90191 0.95404 0.92280 0.93507 0.92452 0.91933 0.91299 0.91461 0.88298 0.88295 0.88868 0.88909 0.91128 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -33.02 9.43 25.60 0.24 -32.78 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.13 5.69 71.24 0.41 12.54 16 10 O -0.41 -20.25 9.85 -148.98 -1.47 -21.71 16 11 C 0.05 2.06 6.28 71.98 0.45 2.51 16 12 C 0.07 2.24 6.11 86.30 0.53 2.77 16 13 N -0.70 -21.03 6.50 -513.88 -3.34 -24.37 16 14 C 0.06 1.49 5.15 86.30 0.44 1.94 16 15 C -0.07 -1.54 2.40 -10.75 -0.03 -1.57 16 16 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 17 C -0.12 -2.70 4.94 30.56 0.15 -2.55 16 18 C -0.11 -2.29 5.93 30.64 0.18 -2.11 16 19 C -0.08 -1.30 5.67 30.70 0.17 -1.13 16 20 C -0.13 -2.09 1.97 -52.20 -0.10 -2.19 16 21 C -0.17 -2.29 9.99 30.54 0.31 -1.99 16 22 C -0.18 -2.72 9.93 30.56 0.30 -2.41 16 23 C -0.07 -1.17 4.96 30.71 0.15 -1.02 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.34 11.81 6.48 -89.69 -0.58 11.23 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.30 6.54 -2.39 -0.02 1.28 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -64.92 356.29 1.52 -63.40 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.34 Total: 19.60 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.67 Total: -27.23 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.06 Total: -80.79 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.47 Total: -21.71 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.92 1.52 -63.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695676782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.298 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds