Wall clock time and date at job start Mon Mar 30 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47375 * 240.00077 * 3 2 1 5 5 H 1.48502 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47158 * 120.00239 * 3 2 1 7 7 C 1.37882 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99864 * 12 11 10 14 14 C 1.46899 * 110.99842 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47187 * 180.02562 * 14 13 12 16 16 H 1.09010 * 109.47214 * 304.99042 * 15 14 13 17 17 C 1.52950 * 109.47618 * 64.99558 * 15 14 13 18 18 C 1.52934 * 109.82116 * 182.97894 * 17 15 14 19 19 C 1.53179 * 109.45613 * 297.01837 * 18 17 15 20 20 C 1.53148 * 108.88015 * 56.56901 * 19 18 17 21 21 C 1.52809 * 117.75122 * 160.37656 * 20 19 18 22 22 C 1.52846 * 117.68167 * 91.49298 * 20 19 18 23 23 C 1.53159 * 115.00617 * 306.06131 * 20 19 18 24 24 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46405 * 60.00391 * 9 7 2 26 26 H 1.09004 * 109.47198 * 300.00876 * 9 7 2 27 27 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 28 28 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 29 29 H 1.09002 * 109.46642 * 184.99995 * 12 11 10 30 30 H 1.09002 * 109.47069 * 304.99524 * 12 11 10 31 31 H 1.00895 * 110.99728 * 303.95351 * 13 12 11 32 32 H 1.09004 * 109.47030 * 300.00027 * 14 13 12 33 33 H 1.09003 * 109.47440 * 59.99737 * 14 13 12 34 34 H 1.09004 * 109.41140 * 303.08858 * 17 15 14 35 35 H 1.09004 * 109.40954 * 62.87172 * 17 15 14 36 36 H 1.09005 * 109.47481 * 57.01866 * 18 17 15 37 37 H 1.09006 * 109.47230 * 177.02352 * 18 17 15 38 38 H 1.09000 * 109.56891 * 176.38587 * 19 18 17 39 39 H 1.09001 * 109.56976 * 296.62721 * 19 18 17 40 40 H 1.08999 * 117.50126 * 359.85051 * 21 20 19 41 41 H 1.08998 * 117.50126 * 144.88307 * 21 20 19 42 42 H 1.09006 * 117.50502 * 215.21699 * 22 20 19 43 43 H 1.08992 * 117.50525 * 0.27341 * 22 20 19 44 44 H 1.09002 * 109.56588 * 294.11899 * 23 20 19 45 45 H 1.08998 * 109.56896 * 173.76288 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 7 3.4071 -5.8880 1.2553 14 6 4.4577 -6.9140 1.2917 15 6 5.2246 -6.8122 2.6117 16 1 5.6037 -5.7975 2.7344 17 6 4.2883 -7.1504 3.7729 18 6 5.0266 -6.9792 5.1012 19 6 6.1930 -7.9699 5.1680 20 6 7.1031 -7.7463 3.9567 21 6 8.5346 -8.2751 4.0350 22 6 8.2686 -6.7702 4.1148 23 6 6.3973 -7.7974 2.5984 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 0.9450 -4.9823 -0.8913 28 1 0.9445 -4.9827 0.8886 29 1 2.1818 -6.9375 -0.0904 30 1 3.3220 -5.7957 -0.8418 31 1 3.7955 -4.9671 1.3933 32 1 4.0039 -7.9018 1.2109 33 1 5.1445 -6.7606 0.4593 34 1 3.4261 -6.4839 3.7490 35 1 3.9500 -8.1822 3.6767 36 1 5.4095 -5.9614 5.1756 37 1 4.3399 -7.1703 5.9259 38 1 6.7590 -7.8061 6.0850 39 1 5.8075 -8.9893 5.1540 40 1 8.8342 -8.7826 4.9519 41 1 8.9800 -8.6596 3.1175 42 1 8.5390 -6.1647 3.2497 43 1 8.3931 -6.2877 5.0841 44 1 6.0249 -8.8059 2.4183 45 1 7.0987 -7.5195 1.8118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695676785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:31 Heat of formation + Delta-G solvation = -56.701239 kcal Electronic energy + Delta-G solvation = -20301.121873 eV Core-core repulsion = 17317.792537 eV Total energy + Delta-G solvation = -2983.329335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68199 -37.28639 -36.07652 -34.23357 -32.69781 -31.61548 -28.77769 -27.47211 -26.71244 -24.38495 -22.70139 -22.34318 -22.07000 -21.29224 -20.33185 -18.73508 -16.43437 -15.91397 -15.71812 -15.42608 -15.19132 -14.85609 -14.51783 -14.35082 -14.09748 -13.71191 -13.35595 -13.14708 -12.82565 -12.40409 -12.12270 -11.92281 -11.75466 -11.66282 -11.55940 -11.20407 -11.12889 -11.01239 -10.81266 -10.74624 -10.60198 -10.58095 -10.14575 -10.05259 -9.95301 -9.61894 -9.10680 -8.80695 -8.15686 -8.13572 -6.09857 -4.11704 3.32570 3.35279 3.39019 3.56704 4.27849 4.35717 4.48797 4.58678 4.71901 4.75587 4.95745 5.00088 5.05959 5.19877 5.26450 5.29503 5.40192 5.44739 5.46622 5.51962 5.62178 5.70222 5.71746 5.73512 5.77701 5.81160 5.89251 5.91502 5.94507 6.08131 6.14973 6.16391 6.23198 6.28347 6.38003 6.46336 6.49572 7.12878 7.28294 7.45528 7.70424 7.79718 8.16661 8.59450 9.01220 9.53030 11.01653 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.003274 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.703369 B = 8550.993972 C = 9191.061598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.686 5.686 14 C 0.063 3.937 15 C -0.081 4.081 16 H 0.071 0.929 17 C -0.105 4.105 18 C -0.118 4.118 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.180 4.180 22 C -0.175 4.175 23 C -0.075 4.075 24 H 0.264 0.736 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.355 0.645 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 -18.079 7.683 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.016 4.016 12 C -0.063 4.063 13 N -0.318 5.318 14 C -0.067 4.067 15 C -0.099 4.099 16 H 0.089 0.911 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.217 4.217 22 C -0.211 4.211 23 C -0.113 4.113 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.174 0.826 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.091 -18.295 8.023 23.351 hybrid contribution 0.735 1.227 -0.691 1.588 sum 12.826 -17.068 7.333 22.574 Atomic orbital electron populations 1.69957 1.06102 1.27248 1.50462 1.24950 0.94977 0.99417 0.95160 0.86398 0.79315 0.81952 0.78815 1.20062 1.21155 1.19993 1.21019 0.93956 0.89446 1.50940 0.91694 1.20162 0.88694 0.83452 0.95352 1.87785 1.35781 1.13153 1.95227 1.22296 0.94562 0.85270 0.99445 1.21931 0.95864 0.97909 0.90602 1.60451 1.27119 1.09099 1.35145 1.21981 0.92529 0.96363 0.95822 1.21115 0.94543 0.99510 0.94767 0.91064 1.21436 0.98396 1.01665 0.92788 1.21546 0.96688 0.99412 0.97954 1.21147 0.95950 0.99565 0.95126 1.21469 0.89086 1.04276 0.96861 1.22985 0.98971 0.96933 1.02839 1.23014 1.02820 0.92328 1.02987 1.21157 0.96640 0.99594 0.93888 0.92602 0.97866 0.97634 0.94261 0.93584 0.90843 0.94953 0.82592 0.91529 0.95715 0.90317 0.92639 0.91936 0.92158 0.92307 0.91761 0.89106 0.89059 0.88908 0.89017 0.91593 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -15.28 9.43 -34.44 -0.32 -15.60 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.20 5.48 5.69 36.01 0.20 5.69 16 10 O -0.40 -9.62 9.85 -35.23 -0.35 -9.97 16 11 C 0.06 1.18 6.28 37.16 0.23 1.41 16 12 C 0.07 1.02 6.10 -3.82 -0.02 0.99 16 13 N -0.69 -10.18 5.90 -113.78 -0.67 -10.85 16 14 C 0.06 0.75 5.08 -3.82 -0.02 0.73 16 15 C -0.08 -0.88 2.34 -90.56 -0.21 -1.09 16 16 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 17 C -0.11 -1.15 5.03 -26.79 -0.13 -1.28 16 18 C -0.12 -1.16 5.93 -26.67 -0.16 -1.32 16 19 C -0.08 -0.71 5.67 -26.56 -0.15 -0.86 16 20 C -0.12 -1.06 1.97 -154.53 -0.31 -1.36 16 21 C -0.18 -1.47 9.99 -26.81 -0.27 -1.73 16 22 C -0.17 -1.55 9.93 -26.79 -0.27 -1.82 16 23 C -0.07 -0.71 4.96 -26.56 -0.13 -0.84 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.35 5.92 8.29 -39.29 -0.33 5.59 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 1.00 7.66 -51.93 -0.40 0.61 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -30.12 358.57 -10.27 -40.39 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.72 Total: 0.02 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.65 Total: -15.55 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.07 Total: -37.23 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.35 Total: -9.97 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.12 -10.27 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695676785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.311 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds