Wall clock time and date at job start Mon Mar 30 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47375 * 240.00077 * 3 2 1 5 5 H 1.48502 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47158 * 120.00239 * 3 2 1 7 7 C 1.37882 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99864 * 12 11 10 14 14 C 1.46899 * 110.99842 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47187 * 180.02562 * 14 13 12 16 16 H 1.09010 * 109.47214 * 304.99042 * 15 14 13 17 17 C 1.52950 * 109.47618 * 64.99558 * 15 14 13 18 18 C 1.52934 * 109.82116 * 182.97894 * 17 15 14 19 19 C 1.53179 * 109.45613 * 297.01837 * 18 17 15 20 20 C 1.53148 * 108.88015 * 56.56901 * 19 18 17 21 21 C 1.52809 * 117.75122 * 160.37656 * 20 19 18 22 22 C 1.52846 * 117.68167 * 91.49298 * 20 19 18 23 23 C 1.53159 * 115.00617 * 306.06131 * 20 19 18 24 24 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46405 * 60.00391 * 9 7 2 26 26 H 1.09004 * 109.47198 * 300.00876 * 9 7 2 27 27 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 28 28 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 29 29 H 1.09002 * 109.46642 * 184.99995 * 12 11 10 30 30 H 1.09002 * 109.47069 * 304.99524 * 12 11 10 31 31 H 1.00895 * 110.99728 * 303.95351 * 13 12 11 32 32 H 1.09004 * 109.47030 * 300.00027 * 14 13 12 33 33 H 1.09003 * 109.47440 * 59.99737 * 14 13 12 34 34 H 1.09004 * 109.41140 * 303.08858 * 17 15 14 35 35 H 1.09004 * 109.40954 * 62.87172 * 17 15 14 36 36 H 1.09005 * 109.47481 * 57.01866 * 18 17 15 37 37 H 1.09006 * 109.47230 * 177.02352 * 18 17 15 38 38 H 1.09000 * 109.56891 * 176.38587 * 19 18 17 39 39 H 1.09001 * 109.56976 * 296.62721 * 19 18 17 40 40 H 1.08999 * 117.50126 * 359.85051 * 21 20 19 41 41 H 1.08998 * 117.50126 * 144.88307 * 21 20 19 42 42 H 1.09006 * 117.50502 * 215.21699 * 22 20 19 43 43 H 1.08992 * 117.50525 * 0.27341 * 22 20 19 44 44 H 1.09002 * 109.56588 * 294.11899 * 23 20 19 45 45 H 1.08998 * 109.56896 * 173.76288 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 7 3.4071 -5.8880 1.2553 14 6 4.4577 -6.9140 1.2917 15 6 5.2246 -6.8122 2.6117 16 1 5.6037 -5.7975 2.7344 17 6 4.2883 -7.1504 3.7729 18 6 5.0266 -6.9792 5.1012 19 6 6.1930 -7.9699 5.1680 20 6 7.1031 -7.7463 3.9567 21 6 8.5346 -8.2751 4.0350 22 6 8.2686 -6.7702 4.1148 23 6 6.3973 -7.7974 2.5984 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 0.9450 -4.9823 -0.8913 28 1 0.9445 -4.9827 0.8886 29 1 2.1818 -6.9375 -0.0904 30 1 3.3220 -5.7957 -0.8418 31 1 3.7955 -4.9671 1.3933 32 1 4.0039 -7.9018 1.2109 33 1 5.1445 -6.7606 0.4593 34 1 3.4261 -6.4839 3.7490 35 1 3.9500 -8.1822 3.6767 36 1 5.4095 -5.9614 5.1756 37 1 4.3399 -7.1703 5.9259 38 1 6.7590 -7.8061 6.0850 39 1 5.8075 -8.9893 5.1540 40 1 8.8342 -8.7826 4.9519 41 1 8.9800 -8.6596 3.1175 42 1 8.5390 -6.1647 3.2497 43 1 8.3931 -6.2877 5.0841 44 1 6.0249 -8.8059 2.4183 45 1 7.0987 -7.5195 1.8118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695676785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:31 Heat of formation + Delta-G solvation = -73.869684 kcal Electronic energy + Delta-G solvation = -20301.866352 eV Core-core repulsion = 17317.792537 eV Total energy + Delta-G solvation = -2984.073815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45639 -38.89072 -37.30370 -35.36456 -34.76274 -32.61340 -30.26864 -28.79233 -28.12818 -25.46390 -24.51690 -23.37664 -22.90584 -22.65051 -21.22345 -19.48658 -18.64234 -17.54531 -16.98007 -16.51481 -16.43277 -16.24104 -15.84307 -15.55641 -15.31160 -14.91161 -14.65527 -14.29963 -13.90934 -13.56078 -13.40576 -13.21559 -13.02838 -12.86285 -12.71027 -12.60162 -12.44927 -12.30800 -12.26164 -11.93515 -11.86642 -11.80132 -11.47732 -11.30439 -10.94326 -10.87427 -10.75623 -10.36030 -10.23575 -9.30873 -8.32736 -6.45464 1.39413 1.44296 1.52697 2.34085 2.87295 3.01018 3.20240 3.25803 3.71470 3.79216 3.92993 4.03594 4.15233 4.21870 4.28897 4.34658 4.41162 4.45225 4.54221 4.63792 4.64571 4.76938 4.79843 4.81476 4.84597 4.86736 4.88363 4.96112 5.02040 5.06587 5.13277 5.14042 5.17528 5.28775 5.32567 5.37825 5.51221 5.53551 5.56029 5.62201 5.94910 6.14468 6.40922 6.52503 6.80650 7.26454 8.79501 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.003274 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.703369 B = 8550.993972 C = 9191.061598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.212 3.788 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.076 3.924 13 N -0.693 5.693 14 C 0.066 3.934 15 C -0.075 4.075 16 H 0.053 0.947 17 C -0.101 4.101 18 C -0.117 4.117 19 C -0.077 4.077 20 C -0.126 4.126 21 C -0.168 4.168 22 C -0.184 4.184 23 C -0.070 4.070 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.016 1.016 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.104 0.896 30 H 0.031 0.969 31 H 0.341 0.659 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.901 -18.797 7.923 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.137 3.863 10 O -0.329 6.329 11 C -0.023 4.023 12 C -0.053 4.053 13 N -0.325 5.325 14 C -0.063 4.063 15 C -0.094 4.094 16 H 0.071 0.929 17 C -0.139 4.139 18 C -0.154 4.154 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.205 4.205 22 C -0.221 4.221 23 C -0.108 4.108 24 H 0.080 0.920 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.158 0.842 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.476 -19.052 8.262 24.756 hybrid contribution 0.260 1.368 -0.760 1.587 sum 13.736 -17.684 7.502 23.615 Atomic orbital electron populations 1.70069 1.07804 1.28741 1.50403 1.25983 0.95973 1.03452 0.93887 0.85225 0.78089 0.76654 0.79391 1.18972 1.19977 1.18981 1.21366 0.94105 0.90847 1.52382 0.91947 1.19781 0.88565 0.84639 0.93332 1.87750 1.35544 1.14391 1.95207 1.22612 0.96139 0.83868 0.99666 1.21897 0.94949 0.97679 0.90811 1.60501 1.28209 1.08936 1.34818 1.22039 0.91957 0.95912 0.96414 1.21043 0.95021 0.99072 0.94247 0.92881 1.21372 0.97658 1.01408 0.93457 1.21517 0.97230 0.99189 0.97504 1.21123 0.95413 0.99470 0.95386 1.21498 0.89566 1.04903 0.96642 1.23043 0.97744 0.96112 1.03625 1.23047 1.03185 0.92985 1.02898 1.21105 0.95921 0.99412 0.94345 0.92017 0.99755 0.99817 0.93421 0.93926 0.87797 0.95095 0.84172 0.90174 0.95575 0.92662 0.91854 0.93154 0.91576 0.91557 0.90992 0.88073 0.88468 0.89453 0.88877 0.90678 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.01 0.32 5.46 84.66 0.46 0.79 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -33.16 9.43 25.60 0.24 -32.92 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 12.15 5.69 71.24 0.41 12.56 16 10 O -0.41 -20.17 9.85 -148.98 -1.47 -21.64 16 11 C 0.05 2.07 6.28 71.98 0.45 2.52 16 12 C 0.08 2.25 6.10 86.30 0.53 2.78 16 13 N -0.69 -20.38 5.90 -513.88 -3.03 -23.41 16 14 C 0.07 1.50 5.08 86.30 0.44 1.94 16 15 C -0.07 -1.59 2.34 -10.75 -0.03 -1.61 16 16 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 17 C -0.10 -2.15 5.03 30.56 0.15 -2.00 16 18 C -0.12 -2.21 5.93 30.63 0.18 -2.03 16 19 C -0.08 -1.22 5.67 30.70 0.17 -1.04 16 20 C -0.13 -2.08 1.97 -52.19 -0.10 -2.18 16 21 C -0.17 -2.38 9.99 30.54 0.31 -2.08 16 22 C -0.18 -3.07 9.93 30.55 0.30 -2.77 16 23 C -0.07 -1.22 4.96 30.70 0.15 -1.07 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 26 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.34 11.61 8.29 -89.70 -0.74 10.87 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 35 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 Total: -1.00 -64.63 358.57 1.66 -62.97 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.18 Total: 18.85 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 3.67 Total: -27.11 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.75 Total: -79.83 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.47 Total: -21.64 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.63 1.66 -62.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695676785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.896 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds