Wall clock time and date at job start Mon Mar 30 2020 07:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42904 * 109.47125 * 2 1 4 4 C 1.53002 * 109.46689 * 119.99668 * 2 1 3 5 5 C 1.53001 * 109.47125 * 60.00309 * 4 2 1 6 6 C 1.52995 * 109.47244 * 59.99570 * 5 4 2 7 7 C 1.53002 * 109.47411 * 300.00255 * 6 5 4 8 8 C 1.52995 * 109.47178 * 239.99791 * 2 1 3 9 9 H 1.08998 * 109.47131 * 179.97438 * 8 2 1 10 10 N 1.46900 * 109.47432 * 60.00028 * 8 2 1 11 11 C 1.46839 * 111.00258 * 200.08595 * 10 8 2 12 12 C 1.53040 * 109.52520 * 174.16162 * 11 10 8 13 13 C 1.53115 * 109.27895 * 59.17646 * 12 11 10 14 14 C 1.53123 * 109.15947 * 302.34796 * 13 12 11 15 15 H 1.08995 * 109.50408 * 297.70910 * 14 13 12 16 16 C 1.50707 * 109.49799 * 177.59642 * 14 13 12 17 17 H 1.08006 * 119.99044 * 240.19326 * 16 14 13 18 18 C 1.37867 * 120.00305 * 60.19719 * 16 14 13 19 19 N 1.31517 * 120.00041 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00008 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47267 * 59.99865 * 20 18 16 22 22 H 1.48503 * 109.47274 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47121 * 299.99842 * 20 18 16 24 24 C 1.46851 * 110.99968 * 75.86975 * 10 8 2 25 25 H 1.09001 * 109.47059 * 298.82875 * 1 2 3 26 26 H 1.08999 * 109.47004 * 58.82588 * 1 2 3 27 27 H 1.08997 * 109.46956 * 178.82527 * 1 2 3 28 28 H 0.96698 * 114.00176 * 59.99369 * 3 2 1 29 29 H 1.09000 * 109.47190 * 300.00024 * 4 2 1 30 30 H 1.08998 * 109.46658 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47163 * 299.99458 * 5 4 2 32 32 H 1.09002 * 109.46862 * 179.97438 * 5 4 2 33 33 H 1.08998 * 109.47104 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47033 * 60.00187 * 6 5 4 35 35 H 1.09000 * 109.47190 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.46658 * 299.99904 * 7 6 5 37 37 H 1.09000 * 109.46575 * 294.17643 * 11 10 8 38 38 H 1.09001 * 109.46612 * 54.14161 * 11 10 8 39 39 H 1.09000 * 109.50113 * 299.23527 * 12 11 10 40 40 H 1.09002 * 109.53609 * 179.14274 * 12 11 10 41 41 H 1.09003 * 109.52183 * 182.44228 * 13 12 11 42 42 H 1.08996 * 109.57242 * 62.28261 * 13 12 11 43 43 H 0.97002 * 120.00190 * 179.97438 * 19 18 16 44 44 H 1.08991 * 109.46200 * 305.86241 * 24 10 8 45 45 H 1.09005 * 109.45440 * 65.84079 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0002 7 6 1.5301 -2.1638 -1.2492 8 6 2.0401 -0.7213 -1.2492 9 1 3.1301 -0.7209 -1.2494 10 7 1.5505 -0.0289 -2.4487 11 6 1.5976 -0.9110 -3.6216 12 6 0.9478 -0.2088 -4.8161 13 6 1.6965 1.0953 -5.1045 14 6 1.6740 1.9753 -3.8516 15 1 0.6436 2.2317 -3.6055 16 6 2.4594 3.2357 -4.1081 17 1 3.3211 3.4680 -3.4999 18 6 2.0778 4.0921 -5.1189 19 7 1.0281 3.8094 -5.8591 20 14 3.0509 5.6548 -5.4362 21 1 4.4540 5.3043 -5.7735 22 1 2.4399 6.3972 -6.5679 23 1 3.0321 6.5054 -4.2192 24 6 2.3028 1.2099 -2.6852 25 1 -0.3633 0.4955 0.9003 26 1 -0.3633 0.5320 -0.8793 27 1 -0.3633 -1.0274 -0.0211 28 1 1.7210 1.8654 0.7650 29 1 1.6766 -0.2073 2.1393 30 1 3.1300 -0.7208 1.2496 31 1 0.4400 -2.1637 1.2493 32 1 1.8936 -2.6776 2.1392 33 1 1.6770 -3.9128 0.0004 34 1 3.1300 -2.8850 0.0002 35 1 1.8938 -2.6774 -2.1391 36 1 0.4401 -2.1638 -1.2492 37 1 2.6355 -1.1451 -3.8586 38 1 1.0580 -1.8329 -3.4047 39 1 -0.0941 0.0131 -4.5851 40 1 0.9963 -0.8575 -5.6908 41 1 1.2105 1.6201 -5.9271 42 1 2.7286 0.8718 -5.3742 43 1 0.7594 4.4122 -6.5700 44 1 2.2754 1.8283 -1.7881 45 1 3.3374 0.9659 -2.9267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699406093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:16 Heat of formation + Delta-G solvation = -62.948584 kcal Electronic energy + Delta-G solvation = -22505.512228 eV Core-core repulsion = 19521.911987 eV Total energy + Delta-G solvation = -2983.600241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04762 -37.24888 -35.45000 -33.48363 -31.63913 -30.49105 -29.76208 -28.75360 -26.33918 -24.93281 -23.24026 -22.35188 -21.14696 -20.59321 -18.56580 -18.46314 -16.86425 -16.19571 -15.44334 -15.20924 -14.73688 -14.39444 -13.85918 -13.78381 -13.47473 -13.28985 -12.78856 -12.54240 -12.49520 -12.17549 -12.00614 -11.91311 -11.40317 -11.29429 -11.17036 -11.12543 -10.83046 -10.77960 -10.59451 -10.54999 -10.36619 -10.05614 -9.78311 -9.66624 -9.57397 -9.23889 -8.72360 -8.47921 -8.17914 -7.44635 -5.86148 -3.90906 3.39156 3.43081 3.46314 4.32444 4.42719 4.57160 4.71856 4.96734 5.01370 5.19338 5.32975 5.38215 5.38884 5.43842 5.49243 5.64525 5.77326 5.83670 5.92916 5.94912 5.95870 6.01971 6.07700 6.13540 6.19110 6.20977 6.36946 6.40323 6.47296 6.63186 6.74659 6.86316 6.87706 6.94182 7.32420 7.38612 7.56863 7.85837 7.90155 7.97315 8.11675 8.26848 8.32443 8.64552 9.13576 9.72375 11.19954 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.005612 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.411895 B = 4988.245406 C = 5571.699152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 O -0.542 6.542 4 C -0.144 4.144 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.121 4.121 8 C 0.101 3.899 9 H 0.037 0.963 10 N -0.525 5.525 11 C 0.055 3.945 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.031 0.969 16 C -0.508 4.508 17 H 0.052 0.948 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.060 3.940 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.363 0.637 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.018 0.982 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.027 0.973 43 H 0.258 0.742 44 H 0.097 0.903 45 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -12.416 12.321 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.102 3.898 3 O -0.348 6.348 4 C -0.182 4.182 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.159 4.159 8 C -0.008 4.008 9 H 0.055 0.945 10 N -0.249 5.249 11 C -0.072 4.072 12 C -0.154 4.154 13 C -0.150 4.150 14 C 0.038 3.962 15 H 0.049 0.951 16 C -0.547 4.547 17 H 0.070 0.930 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.066 4.066 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.210 0.790 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -0.948 -12.406 11.671 17.059 hybrid contribution 1.217 0.791 0.135 1.458 sum 0.269 -11.615 11.806 16.564 Atomic orbital electron populations 1.22416 0.95483 1.02226 1.02460 1.21100 0.93245 0.82237 0.93255 1.86745 1.76933 1.22917 1.48167 1.22258 1.01413 0.96345 0.98227 1.21542 1.01112 0.95132 0.97702 1.21568 1.00773 0.98773 0.94680 1.21856 1.01884 0.94434 0.97707 1.21435 0.96770 0.91984 0.90618 0.94460 1.62026 1.55820 1.05738 1.01337 1.22171 0.97967 0.95466 0.91636 1.21660 1.00428 0.98361 0.94915 1.21661 0.97332 0.93162 1.02798 1.18637 0.96604 0.91919 0.89045 0.95099 1.21146 1.12652 1.05216 1.15644 0.93020 1.24923 0.95080 0.97762 0.96135 1.69892 1.25386 1.37036 1.20746 0.86724 0.80239 0.83737 0.77636 1.20496 1.21429 1.20363 1.22634 0.92874 0.89244 1.01814 0.93788 0.89968 0.92036 0.79012 0.91907 0.91607 0.91469 0.92236 0.91915 0.92152 0.91222 0.90643 0.96364 0.92018 0.92269 0.93871 0.89379 0.95443 0.93200 0.88526 0.97510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 7.95 37.16 0.30 -1.96 16 2 C 0.14 1.99 0.91 -90.62 -0.08 1.91 16 3 O -0.54 -8.59 9.76 -35.23 -0.34 -8.93 16 4 C -0.14 -1.60 5.07 -26.73 -0.14 -1.74 16 5 C -0.12 -1.14 5.65 -26.73 -0.15 -1.29 16 6 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 7 C -0.12 -1.53 3.91 -26.73 -0.10 -1.63 16 8 C 0.10 1.59 1.63 -67.71 -0.11 1.48 16 9 H 0.04 0.65 8.00 -51.93 -0.42 0.24 16 10 N -0.53 -9.97 3.77 -226.70 -0.85 -10.83 16 11 C 0.06 1.01 4.64 -3.84 -0.02 0.99 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 13 C -0.11 -2.76 5.03 -26.61 -0.13 -2.89 16 14 C 0.06 1.48 2.26 -91.69 -0.21 1.28 16 15 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 16 C -0.51 -14.51 8.56 -34.44 -0.29 -14.80 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -26.16 11.36 55.43 0.63 -25.53 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.06 1.38 4.41 -3.84 -0.02 1.36 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16 27 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 28 H 0.36 4.28 9.05 45.56 0.41 4.69 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.63 6.46 -51.93 -0.34 0.30 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 36 H 0.08 0.95 6.40 -51.93 -0.33 0.62 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.97 5.86 -51.93 -0.30 0.66 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.10 2.26 4.94 -51.93 -0.26 2.00 16 45 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -30.07 322.45 -9.24 -39.32 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.14 Total: 3.75 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.37 Total: -19.54 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.22 Total: -36.36 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.34 Total: -8.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.07 -9.24 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699406093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.629 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds