Wall clock time and date at job start Mon Mar 30 2020 07:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42904 * 109.47125 * 2 1 4 4 C 1.53002 * 109.46689 * 119.99668 * 2 1 3 5 5 C 1.53001 * 109.47125 * 60.00309 * 4 2 1 6 6 C 1.52995 * 109.47244 * 59.99570 * 5 4 2 7 7 C 1.53002 * 109.47411 * 300.00255 * 6 5 4 8 8 C 1.52995 * 109.47178 * 239.99791 * 2 1 3 9 9 H 1.08998 * 109.47131 * 179.97438 * 8 2 1 10 10 N 1.46900 * 109.47432 * 60.00028 * 8 2 1 11 11 C 1.46839 * 111.00258 * 200.08595 * 10 8 2 12 12 C 1.53040 * 109.52520 * 174.16162 * 11 10 8 13 13 C 1.53115 * 109.27895 * 59.17646 * 12 11 10 14 14 C 1.53123 * 109.15947 * 302.34796 * 13 12 11 15 15 H 1.08995 * 109.50408 * 297.70910 * 14 13 12 16 16 C 1.50707 * 109.49799 * 177.59642 * 14 13 12 17 17 H 1.08006 * 119.99044 * 240.19326 * 16 14 13 18 18 C 1.37867 * 120.00305 * 60.19719 * 16 14 13 19 19 N 1.31517 * 120.00041 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00008 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47267 * 59.99865 * 20 18 16 22 22 H 1.48503 * 109.47274 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47121 * 299.99842 * 20 18 16 24 24 C 1.46851 * 110.99968 * 75.86975 * 10 8 2 25 25 H 1.09001 * 109.47059 * 298.82875 * 1 2 3 26 26 H 1.08999 * 109.47004 * 58.82588 * 1 2 3 27 27 H 1.08997 * 109.46956 * 178.82527 * 1 2 3 28 28 H 0.96698 * 114.00176 * 59.99369 * 3 2 1 29 29 H 1.09000 * 109.47190 * 300.00024 * 4 2 1 30 30 H 1.08998 * 109.46658 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47163 * 299.99458 * 5 4 2 32 32 H 1.09002 * 109.46862 * 179.97438 * 5 4 2 33 33 H 1.08998 * 109.47104 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47033 * 60.00187 * 6 5 4 35 35 H 1.09000 * 109.47190 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.46658 * 299.99904 * 7 6 5 37 37 H 1.09000 * 109.46575 * 294.17643 * 11 10 8 38 38 H 1.09001 * 109.46612 * 54.14161 * 11 10 8 39 39 H 1.09000 * 109.50113 * 299.23527 * 12 11 10 40 40 H 1.09002 * 109.53609 * 179.14274 * 12 11 10 41 41 H 1.09003 * 109.52183 * 182.44228 * 13 12 11 42 42 H 1.08996 * 109.57242 * 62.28261 * 13 12 11 43 43 H 0.97002 * 120.00190 * 179.97438 * 19 18 16 44 44 H 1.08991 * 109.46200 * 305.86241 * 24 10 8 45 45 H 1.09005 * 109.45440 * 65.84079 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0002 7 6 1.5301 -2.1638 -1.2492 8 6 2.0401 -0.7213 -1.2492 9 1 3.1301 -0.7209 -1.2494 10 7 1.5505 -0.0289 -2.4487 11 6 1.5976 -0.9110 -3.6216 12 6 0.9478 -0.2088 -4.8161 13 6 1.6965 1.0953 -5.1045 14 6 1.6740 1.9753 -3.8516 15 1 0.6436 2.2317 -3.6055 16 6 2.4594 3.2357 -4.1081 17 1 3.3211 3.4680 -3.4999 18 6 2.0778 4.0921 -5.1189 19 7 1.0281 3.8094 -5.8591 20 14 3.0509 5.6548 -5.4362 21 1 4.4540 5.3043 -5.7735 22 1 2.4399 6.3972 -6.5679 23 1 3.0321 6.5054 -4.2192 24 6 2.3028 1.2099 -2.6852 25 1 -0.3633 0.4955 0.9003 26 1 -0.3633 0.5320 -0.8793 27 1 -0.3633 -1.0274 -0.0211 28 1 1.7210 1.8654 0.7650 29 1 1.6766 -0.2073 2.1393 30 1 3.1300 -0.7208 1.2496 31 1 0.4400 -2.1637 1.2493 32 1 1.8936 -2.6776 2.1392 33 1 1.6770 -3.9128 0.0004 34 1 3.1300 -2.8850 0.0002 35 1 1.8938 -2.6774 -2.1391 36 1 0.4401 -2.1638 -1.2492 37 1 2.6355 -1.1451 -3.8586 38 1 1.0580 -1.8329 -3.4047 39 1 -0.0941 0.0131 -4.5851 40 1 0.9963 -0.8575 -5.6908 41 1 1.2105 1.6201 -5.9271 42 1 2.7286 0.8718 -5.3742 43 1 0.7594 4.4122 -6.5700 44 1 2.2754 1.8283 -1.7881 45 1 3.3374 0.9659 -2.9267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699406093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:15 Heat of formation + Delta-G solvation = -82.654558 kcal Electronic energy + Delta-G solvation = -22506.366743 eV Core-core repulsion = 19521.911987 eV Total energy + Delta-G solvation = -2984.454756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25135 -38.82378 -36.57574 -35.32362 -33.38351 -31.81967 -31.29850 -30.04353 -27.46931 -26.94818 -24.69974 -23.83511 -22.28791 -22.12750 -20.31919 -19.67594 -18.43328 -17.89006 -16.76333 -16.57791 -16.45719 -15.65923 -15.39301 -15.11596 -14.69917 -14.62227 -14.29852 -14.20753 -13.88231 -13.80780 -13.27035 -13.09518 -12.89107 -12.81096 -12.64382 -12.55316 -12.44780 -12.22175 -12.13872 -11.85634 -11.64330 -11.54920 -11.35736 -11.31909 -10.95148 -10.80290 -10.65267 -10.35738 -10.23164 -9.02555 -8.06538 -6.20312 1.39543 1.41704 1.49404 2.43240 3.08523 3.19469 3.32487 3.75409 4.00375 4.02591 4.22881 4.24912 4.28747 4.31321 4.35908 4.44899 4.51892 4.53865 4.65305 4.75836 4.85787 4.88627 4.93242 5.00075 5.03641 5.06302 5.12830 5.15620 5.22884 5.25733 5.26876 5.35448 5.40344 5.45821 5.49202 5.63504 5.64180 5.68977 6.00901 6.21836 6.26388 6.47541 6.53794 6.92066 7.05759 7.46784 8.98009 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.005612 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.411895 B = 4988.245406 C = 5571.699152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 O -0.573 6.573 4 C -0.137 4.137 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.096 3.904 9 H 0.016 0.984 10 N -0.528 5.528 11 C 0.058 3.942 12 C -0.109 4.109 13 C -0.105 4.105 14 C 0.057 3.943 15 H -0.007 1.007 16 C -0.535 4.535 17 H 0.044 0.956 18 C 0.015 3.985 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.271 1.271 24 C 0.079 3.921 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.378 0.622 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.014 0.986 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.090 0.910 45 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 -14.113 13.896 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.097 3.903 3 O -0.381 6.381 4 C -0.175 4.175 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.013 4.013 9 H 0.034 0.966 10 N -0.252 5.252 11 C -0.070 4.070 12 C -0.147 4.147 13 C -0.143 4.143 14 C 0.039 3.961 15 H 0.012 0.988 16 C -0.573 4.573 17 H 0.062 0.938 18 C -0.184 4.184 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.197 1.197 24 C -0.048 4.048 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.228 0.772 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.033 0.967 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges -1.051 -14.114 13.267 19.400 hybrid contribution 1.234 1.335 -0.347 1.851 sum 0.183 -12.779 12.921 18.174 Atomic orbital electron populations 1.22331 0.94905 1.02971 1.01617 1.21246 0.93624 0.81629 0.93810 1.86658 1.77491 1.24352 1.49616 1.22182 1.00824 0.97399 0.97080 1.21563 1.01589 0.93832 0.98220 1.21563 1.00609 0.99700 0.93529 1.21844 1.02082 0.92104 0.99377 1.21656 0.95703 0.94151 0.89757 0.96572 1.61979 1.55146 1.05131 1.02942 1.22214 0.98019 0.96272 0.90484 1.21577 0.99345 0.96602 0.97148 1.21474 0.96788 0.95092 1.00955 1.18540 0.94248 0.92249 0.91097 0.98842 1.21478 1.12936 1.06828 1.16106 0.93792 1.25706 0.96035 1.00928 0.95720 1.70033 1.26506 1.38059 1.20946 0.85687 0.78886 0.79737 0.77780 1.19883 1.20568 1.19653 1.22246 0.91663 0.90935 0.99986 0.91874 0.93681 0.90294 0.77212 0.90124 0.92525 0.90636 0.90158 0.89587 0.92508 0.91122 0.90124 0.96750 0.88307 0.92972 0.91335 0.92465 0.96656 0.93077 0.89241 0.99526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.95 71.98 0.57 -3.49 16 2 C 0.14 3.69 0.91 -10.79 -0.01 3.68 16 3 O -0.57 -18.32 9.76 -148.98 -1.45 -19.77 16 4 C -0.14 -2.69 5.07 30.60 0.16 -2.54 16 5 C -0.11 -1.77 5.65 30.59 0.17 -1.60 16 6 C -0.12 -1.97 5.92 30.59 0.18 -1.79 16 7 C -0.12 -2.64 3.91 30.60 0.12 -2.52 16 8 C 0.10 2.95 1.63 44.91 0.07 3.02 16 9 H 0.02 0.57 8.00 -2.39 -0.02 0.55 16 10 N -0.53 -20.25 3.77 -871.15 -3.28 -23.53 16 11 C 0.06 2.06 4.64 86.33 0.40 2.46 16 12 C -0.11 -4.44 6.09 30.65 0.19 -4.25 16 13 C -0.10 -5.40 5.03 30.67 0.15 -5.25 16 14 C 0.06 3.16 2.26 -11.49 -0.03 3.14 16 15 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 16 C -0.53 -31.85 8.56 25.60 0.22 -31.63 16 17 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 18 C 0.01 0.85 5.30 84.65 0.45 1.30 16 19 N -0.92 -55.43 11.36 21.44 0.24 -55.18 16 20 Si 0.95 45.77 29.54 68.60 2.03 47.80 16 21 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.08 3.75 4.41 86.32 0.38 4.13 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.48 7.64 -2.39 -0.02 1.46 16 27 H 0.08 1.69 4.81 -2.39 -0.01 1.67 16 28 H 0.38 8.86 9.05 -74.06 -0.67 8.19 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.08 6.46 -2.39 -0.02 1.06 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.58 6.29 -2.39 -0.02 1.57 16 36 H 0.08 1.77 6.40 -2.39 -0.02 1.75 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 2.84 5.86 -2.39 -0.01 2.82 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.06 3.28 6.17 -2.39 -0.01 3.27 16 42 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.09 4.38 4.94 -2.39 -0.01 4.37 16 45 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 Total: -1.00 -68.18 322.45 0.85 -67.33 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.29 Total: 18.69 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.03 Total: -35.33 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -3.04 Total: -78.71 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.45 Total: -19.77 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.18 0.85 -67.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699406093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.327 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds