Wall clock time and date at job start Mon Mar 30 2020 07:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47251 * 120.00112 * 2 1 3 5 5 C 1.53003 * 109.47044 * 59.99691 * 4 2 1 6 6 C 1.52998 * 109.46997 * 60.00206 * 5 4 2 7 7 C 1.53002 * 109.47056 * 299.99787 * 6 5 4 8 8 C 1.52996 * 109.47130 * 59.99991 * 7 6 5 9 9 H 1.09005 * 109.47110 * 60.00186 * 8 7 6 10 10 N 1.46904 * 109.46988 * 179.97438 * 8 7 6 11 11 C 1.46847 * 111.00057 * 196.72708 * 10 8 7 12 12 C 1.53030 * 109.52638 * 185.84088 * 11 10 8 13 13 C 1.53120 * 109.27949 * 300.82555 * 12 11 10 14 14 C 1.50697 * 109.52264 * 177.55852 * 13 12 11 15 15 H 1.08001 * 120.00573 * 354.59379 * 14 13 12 16 16 C 1.37883 * 119.99787 * 174.60153 * 14 13 12 17 17 N 1.31517 * 119.99845 * 158.01292 * 16 14 13 18 18 Si 1.86797 * 119.99827 * 338.00221 * 16 14 13 19 19 H 1.48507 * 109.47022 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47569 * 300.00332 * 18 16 14 21 21 H 1.48499 * 109.46883 * 60.00781 * 18 16 14 22 22 C 1.53115 * 109.21412 * 57.61677 * 13 12 11 23 23 C 1.46846 * 111.00040 * 320.94053 * 10 8 7 24 24 H 1.08996 * 109.46974 * 183.80791 * 1 2 3 25 25 H 1.09003 * 109.46782 * 303.80193 * 1 2 3 26 26 H 1.08998 * 109.47392 * 63.80090 * 1 2 3 27 27 H 0.96695 * 114.00083 * 59.99911 * 3 2 1 28 28 H 1.09000 * 109.46663 * 300.00071 * 4 2 1 29 29 H 1.08996 * 109.47151 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47107 * 299.99978 * 5 4 2 31 31 H 1.09003 * 109.46850 * 180.02562 * 5 4 2 32 32 H 1.09003 * 109.47260 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.47378 * 59.99938 * 6 5 4 34 34 H 1.09002 * 109.47095 * 299.99575 * 7 6 5 35 35 H 1.09000 * 109.47190 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46018 * 65.82687 * 11 10 8 37 37 H 1.08997 * 109.45380 * 305.85445 * 11 10 8 38 38 H 1.08994 * 109.50830 * 180.88115 * 12 11 10 39 39 H 1.09005 * 109.50207 * 60.76421 * 12 11 10 40 40 H 1.08998 * 109.52127 * 297.68086 * 13 12 11 41 41 H 0.96993 * 120.00187 * 354.93950 * 17 16 14 42 42 H 1.09007 * 109.50244 * 62.32300 * 22 13 12 43 43 H 1.09004 * 109.50365 * 182.43846 * 22 13 12 44 44 H 1.09003 * 109.46252 * 294.17200 * 23 10 8 45 45 H 1.08994 * 109.46211 * 54.15494 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 -1.2492 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7213 -1.2493 10 7 1.5507 -0.0290 -2.4490 11 6 2.3165 1.1993 -2.6968 12 6 1.6893 1.9665 -3.8630 13 6 1.6926 1.0800 -5.1114 14 6 1.0219 1.8080 -6.2478 15 1 0.5549 2.7663 -6.0745 16 6 1.0044 1.2506 -7.5088 17 7 0.0935 1.6247 -8.3805 18 14 2.2747 -0.0357 -7.9790 19 1 2.0415 -0.4731 -9.3789 20 1 3.6356 0.5470 -7.8632 21 1 2.1571 -1.2033 -7.0691 22 6 0.9310 -0.2142 -4.8124 23 6 1.5793 -0.9175 -3.6178 24 1 -0.3633 -1.0254 0.0682 25 1 -0.3633 0.5717 0.8540 26 1 -0.3634 0.4537 -0.9221 27 1 1.7211 1.8653 0.7650 28 1 1.6767 -0.2074 2.1392 29 1 3.1301 -0.7217 1.2490 30 1 0.4401 -2.1637 1.2493 31 1 1.8931 -2.6775 2.1395 32 1 1.6770 -3.9128 0.0002 33 1 3.1300 -2.8851 0.0000 34 1 0.4400 -2.1638 -1.2492 35 1 1.8929 -2.6778 -2.1392 36 1 3.3464 0.9415 -2.9438 37 1 2.3025 1.8225 -1.8027 38 1 2.2670 2.8702 -4.0568 39 1 0.6637 2.2367 -3.6112 40 1 2.7201 0.8427 -5.3869 41 1 -0.6099 2.2372 -8.1143 42 1 -0.1069 0.0206 -4.5760 43 1 0.9674 -0.8676 -5.6842 44 1 2.6127 -1.1653 -3.8604 45 1 1.0299 -1.8315 -3.3926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699407205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:04 Heat of formation + Delta-G solvation = -64.134824 kcal Electronic energy + Delta-G solvation = -22414.582520 eV Core-core repulsion = 19430.930840 eV Total energy + Delta-G solvation = -2983.651680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25040 -37.51412 -35.66083 -33.73338 -31.69426 -30.69196 -29.93167 -29.11785 -26.74652 -24.97234 -23.18718 -22.11915 -21.29866 -20.70541 -18.74038 -18.56905 -17.41750 -16.97814 -15.78129 -15.52175 -14.85234 -14.18849 -13.99290 -13.87415 -13.50232 -13.43985 -13.14415 -12.85779 -12.75615 -12.35476 -12.08640 -11.93940 -11.74525 -11.54215 -11.38331 -11.21950 -11.15461 -10.76660 -10.62038 -10.43615 -10.34401 -10.07858 -9.97990 -9.74573 -9.67438 -9.43489 -8.99335 -8.65758 -8.08720 -7.72907 -6.33452 -3.92596 3.44795 3.49620 3.67911 4.10778 4.23363 4.56996 4.59476 4.81547 4.83808 5.05221 5.15754 5.21547 5.23426 5.31820 5.35223 5.52014 5.64487 5.72685 5.80163 5.82707 5.86905 5.89753 5.95957 5.97753 6.04183 6.05389 6.19272 6.24059 6.30704 6.38385 6.49488 6.56382 6.60838 6.83287 6.92249 7.04760 7.16917 7.43370 7.61010 7.71326 7.82085 7.83616 8.34192 8.49596 9.03005 9.72501 11.02405 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.005390 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.284350 B = 5193.594505 C = 5610.942990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.143 3.857 3 O -0.549 6.549 4 C -0.144 4.144 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.123 4.123 8 C 0.101 3.899 9 H 0.040 0.960 10 N -0.521 5.521 11 C 0.050 3.950 12 C -0.094 4.094 13 C 0.021 3.979 14 C -0.597 4.597 15 H 0.054 0.946 16 C 0.033 3.967 17 N -0.907 5.907 18 Si 1.039 2.961 19 H -0.288 1.288 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.112 4.112 23 C 0.048 3.952 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.364 0.636 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.014 0.986 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.267 0.733 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 -7.893 20.571 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 O -0.355 6.355 4 C -0.182 4.182 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.008 4.008 9 H 0.058 0.942 10 N -0.246 5.246 11 C -0.077 4.077 12 C -0.132 4.132 13 C 0.002 3.998 14 C -0.635 4.635 15 H 0.072 0.928 16 C -0.171 4.171 17 N -0.541 5.541 18 Si 0.868 3.132 19 H -0.214 1.214 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.150 4.150 23 C -0.080 4.080 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.212 0.788 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.033 0.967 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.581 -8.875 18.799 21.095 hybrid contribution 0.090 0.889 1.657 1.882 sum 3.671 -7.986 20.456 22.264 Atomic orbital electron populations 1.22439 0.95318 1.02181 1.02889 1.21135 0.93348 0.81832 0.93448 1.86628 1.77149 1.23333 1.48399 1.22242 1.01419 0.96481 0.98052 1.21563 1.01190 0.95001 0.97845 1.21568 1.00786 0.98950 0.94487 1.21864 1.02070 0.94116 0.97995 1.21458 0.96863 0.92297 0.90175 0.94237 1.61920 1.54573 1.05885 1.02198 1.22490 0.93416 0.91486 1.00309 1.21483 0.99952 0.97609 0.94176 1.18994 0.94727 0.92339 0.93784 1.21983 1.39891 1.06977 0.94603 0.92786 1.25696 0.98596 0.99571 0.93272 1.70834 1.12224 1.32450 1.38603 0.84116 0.76460 0.76692 0.75911 1.21398 1.21291 1.20337 1.22021 1.00348 0.98350 0.94325 1.22376 0.98454 0.95649 0.91500 0.91839 0.93637 0.89930 0.78815 0.91843 0.91555 0.91381 0.92085 0.91706 0.92100 0.90514 0.90914 0.96736 0.88562 0.93161 0.92533 0.97036 0.92290 0.92235 0.92462 0.96219 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 8.01 37.16 0.30 -1.71 16 2 C 0.14 1.71 0.91 -90.62 -0.08 1.63 16 3 O -0.55 -6.95 9.82 -35.23 -0.35 -7.30 16 4 C -0.14 -1.37 5.07 -26.73 -0.14 -1.50 16 5 C -0.12 -1.02 5.65 -26.73 -0.15 -1.17 16 6 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 7 C -0.12 -1.47 3.87 -26.73 -0.10 -1.57 16 8 C 0.10 1.43 1.64 -67.71 -0.11 1.32 16 9 H 0.04 0.61 7.98 -51.93 -0.41 0.20 16 10 N -0.52 -9.04 3.68 -226.69 -0.84 -9.88 16 11 C 0.05 0.94 5.19 -3.84 -0.02 0.92 16 12 C -0.09 -2.07 5.32 -26.65 -0.14 -2.21 16 13 C 0.02 0.51 1.75 -91.65 -0.16 0.35 16 14 C -0.60 -17.30 8.79 -34.44 -0.30 -17.61 16 15 H 0.05 1.69 7.99 -52.49 -0.42 1.27 16 16 C 0.03 0.99 5.29 -17.82 -0.09 0.89 16 17 N -0.91 -28.45 13.70 55.43 0.76 -27.69 16 18 Si 1.04 25.98 26.51 -169.99 -4.51 21.47 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.40 5.83 56.52 0.33 -6.07 16 22 C -0.11 -2.54 5.09 -26.65 -0.14 -2.67 16 23 C 0.05 0.88 4.61 -3.83 -0.02 0.87 16 24 H 0.06 0.69 4.82 -51.93 -0.25 0.44 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.21 7.49 -51.93 -0.39 0.82 16 27 H 0.36 3.18 9.04 45.56 0.41 3.59 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.58 6.35 -51.93 -0.33 0.25 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.93 6.52 -51.93 -0.34 0.59 16 35 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 1.73 5.00 -51.93 -0.26 1.47 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.01 0.29 6.74 -51.93 -0.35 -0.06 16 41 H 0.27 8.36 8.73 -40.82 -0.36 8.00 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.06 1.35 5.27 -51.93 -0.27 1.07 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 1.08 5.87 -51.93 -0.30 0.78 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -31.21 318.52 -8.56 -39.77 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.12 Total: 2.58 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.32 Total: -23.76 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.08 Total: -37.57 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.35 Total: -7.30 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -4.51 Total: 21.47 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.21 -8.56 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699407205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.361 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds