Wall clock time and date at job start Mon Mar 30 2020 07:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47251 * 120.00112 * 2 1 3 5 5 C 1.53003 * 109.47044 * 59.99691 * 4 2 1 6 6 C 1.52998 * 109.46997 * 60.00206 * 5 4 2 7 7 C 1.53002 * 109.47056 * 299.99787 * 6 5 4 8 8 C 1.52996 * 109.47130 * 59.99991 * 7 6 5 9 9 H 1.09005 * 109.47110 * 60.00186 * 8 7 6 10 10 N 1.46904 * 109.46988 * 179.97438 * 8 7 6 11 11 C 1.46847 * 111.00057 * 196.72708 * 10 8 7 12 12 C 1.53030 * 109.52638 * 185.84088 * 11 10 8 13 13 C 1.53120 * 109.27949 * 300.82555 * 12 11 10 14 14 C 1.50697 * 109.52264 * 177.55852 * 13 12 11 15 15 H 1.08001 * 120.00573 * 354.59379 * 14 13 12 16 16 C 1.37883 * 119.99787 * 174.60153 * 14 13 12 17 17 N 1.31517 * 119.99845 * 158.01292 * 16 14 13 18 18 Si 1.86797 * 119.99827 * 338.00221 * 16 14 13 19 19 H 1.48507 * 109.47022 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47569 * 300.00332 * 18 16 14 21 21 H 1.48499 * 109.46883 * 60.00781 * 18 16 14 22 22 C 1.53115 * 109.21412 * 57.61677 * 13 12 11 23 23 C 1.46846 * 111.00040 * 320.94053 * 10 8 7 24 24 H 1.08996 * 109.46974 * 183.80791 * 1 2 3 25 25 H 1.09003 * 109.46782 * 303.80193 * 1 2 3 26 26 H 1.08998 * 109.47392 * 63.80090 * 1 2 3 27 27 H 0.96695 * 114.00083 * 59.99911 * 3 2 1 28 28 H 1.09000 * 109.46663 * 300.00071 * 4 2 1 29 29 H 1.08996 * 109.47151 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47107 * 299.99978 * 5 4 2 31 31 H 1.09003 * 109.46850 * 180.02562 * 5 4 2 32 32 H 1.09003 * 109.47260 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.47378 * 59.99938 * 6 5 4 34 34 H 1.09002 * 109.47095 * 299.99575 * 7 6 5 35 35 H 1.09000 * 109.47190 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46018 * 65.82687 * 11 10 8 37 37 H 1.08997 * 109.45380 * 305.85445 * 11 10 8 38 38 H 1.08994 * 109.50830 * 180.88115 * 12 11 10 39 39 H 1.09005 * 109.50207 * 60.76421 * 12 11 10 40 40 H 1.08998 * 109.52127 * 297.68086 * 13 12 11 41 41 H 0.96993 * 120.00187 * 354.93950 * 17 16 14 42 42 H 1.09007 * 109.50244 * 62.32300 * 22 13 12 43 43 H 1.09004 * 109.50365 * 182.43846 * 22 13 12 44 44 H 1.09003 * 109.46252 * 294.17200 * 23 10 8 45 45 H 1.08994 * 109.46211 * 54.15494 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 -1.2492 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7213 -1.2493 10 7 1.5507 -0.0290 -2.4490 11 6 2.3165 1.1993 -2.6968 12 6 1.6893 1.9665 -3.8630 13 6 1.6926 1.0800 -5.1114 14 6 1.0219 1.8080 -6.2478 15 1 0.5549 2.7663 -6.0745 16 6 1.0044 1.2506 -7.5088 17 7 0.0935 1.6247 -8.3805 18 14 2.2747 -0.0357 -7.9790 19 1 2.0415 -0.4731 -9.3789 20 1 3.6356 0.5470 -7.8632 21 1 2.1571 -1.2033 -7.0691 22 6 0.9310 -0.2142 -4.8124 23 6 1.5793 -0.9175 -3.6178 24 1 -0.3633 -1.0254 0.0682 25 1 -0.3633 0.5717 0.8540 26 1 -0.3634 0.4537 -0.9221 27 1 1.7211 1.8653 0.7650 28 1 1.6767 -0.2074 2.1392 29 1 3.1301 -0.7217 1.2490 30 1 0.4401 -2.1637 1.2493 31 1 1.8931 -2.6775 2.1395 32 1 1.6770 -3.9128 0.0002 33 1 3.1300 -2.8851 0.0000 34 1 0.4400 -2.1638 -1.2492 35 1 1.8929 -2.6778 -2.1392 36 1 3.3464 0.9415 -2.9438 37 1 2.3025 1.8225 -1.8027 38 1 2.2670 2.8702 -4.0568 39 1 0.6637 2.2367 -3.6112 40 1 2.7201 0.8427 -5.3869 41 1 -0.6099 2.2372 -8.1143 42 1 -0.1069 0.0206 -4.5760 43 1 0.9674 -0.8676 -5.6842 44 1 2.6127 -1.1653 -3.8604 45 1 1.0299 -1.8315 -3.3926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699407205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:03 Heat of formation + Delta-G solvation = -85.693763 kcal Electronic energy + Delta-G solvation = -22415.517386 eV Core-core repulsion = 19430.930840 eV Total energy + Delta-G solvation = -2984.586546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31564 -38.97778 -36.58471 -35.52241 -33.58279 -31.85705 -31.28326 -30.32182 -27.93696 -26.56695 -24.55404 -23.59739 -22.37721 -22.13447 -20.37173 -19.71331 -19.62158 -17.96950 -16.95230 -16.61771 -15.84393 -15.74811 -15.54500 -15.29060 -14.84767 -14.72392 -14.57217 -14.36104 -13.92138 -13.76386 -13.50010 -13.11934 -13.09237 -12.86017 -12.60568 -12.43283 -12.21816 -12.17498 -12.07773 -11.98493 -11.62977 -11.52920 -11.43512 -11.30376 -11.09130 -10.89514 -10.66761 -10.46500 -10.32924 -9.11910 -8.71302 -6.32023 1.42983 1.50030 1.70991 2.49070 2.95603 3.02773 3.26931 3.71536 3.96502 3.97023 4.15683 4.20085 4.25025 4.27308 4.34957 4.36350 4.42697 4.47061 4.55083 4.66963 4.75159 4.80803 4.83466 4.88597 4.95912 4.96743 5.04477 5.09234 5.16829 5.19055 5.20425 5.22631 5.32513 5.35243 5.42907 5.50002 5.55036 5.66227 5.77252 6.04215 6.18995 6.28617 6.35468 6.60555 7.01681 7.41961 8.62425 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.005390 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.284350 B = 5193.594505 C = 5610.942990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.143 3.857 3 O -0.571 6.571 4 C -0.136 4.136 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.121 4.121 8 C 0.098 3.902 9 H 0.029 0.971 10 N -0.527 5.527 11 C 0.062 3.938 12 C -0.089 4.089 13 C 0.018 3.982 14 C -0.605 4.605 15 H 0.013 0.987 16 C -0.015 4.015 17 N -0.937 5.937 18 Si 1.080 2.920 19 H -0.287 1.287 20 H -0.271 1.271 21 H -0.244 1.244 22 C -0.107 4.107 23 C 0.056 3.944 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.382 0.618 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.011 0.989 37 H 0.109 0.891 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.022 0.978 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -10.297 23.287 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.103 3.897 3 O -0.380 6.380 4 C -0.175 4.175 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.011 4.011 9 H 0.047 0.953 10 N -0.252 5.252 11 C -0.065 4.065 12 C -0.127 4.127 13 C -0.001 4.001 14 C -0.643 4.643 15 H 0.031 0.969 16 C -0.213 4.213 17 N -0.572 5.572 18 Si 0.901 3.099 19 H -0.213 1.213 20 H -0.196 1.196 21 H -0.169 1.169 22 C -0.145 4.145 23 C -0.072 4.072 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.233 0.767 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.040 0.960 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.805 -11.267 21.562 24.798 hybrid contribution -0.359 1.770 0.843 1.993 sum 4.446 -9.497 22.405 24.738 Atomic orbital electron populations 1.22376 0.95212 1.02812 1.01912 1.21147 0.93305 0.81740 0.93542 1.86520 1.77490 1.24033 1.49922 1.22174 1.01089 0.96998 0.97192 1.21580 1.01454 0.94291 0.98094 1.21552 1.00777 0.99543 0.93496 1.21858 1.01953 0.92737 0.99352 1.21645 0.96328 0.93741 0.89365 0.95295 1.61893 1.54759 1.05580 1.02943 1.22320 0.92818 0.92207 0.99150 1.21376 0.99213 0.97519 0.94621 1.18994 0.94316 0.93485 0.93301 1.22217 1.39576 1.05822 0.96683 0.96905 1.27145 0.99514 1.01372 0.93314 1.70961 1.13193 1.33683 1.39363 0.83615 0.74442 0.75515 0.76317 1.21322 1.19633 1.16888 1.21836 0.99279 0.97291 0.96096 1.22257 0.98409 0.96165 0.90363 0.90815 0.91766 0.93323 0.76750 0.89973 0.92015 0.90948 0.90234 0.90131 0.92113 0.90619 0.91433 0.97045 0.87316 0.93785 0.94246 0.96950 0.93930 0.94114 0.93298 0.95967 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 8.01 71.98 0.58 -2.93 16 2 C 0.14 3.05 0.91 -10.79 -0.01 3.04 16 3 O -0.57 -13.23 9.82 -148.98 -1.46 -14.70 16 4 C -0.14 -2.10 5.07 30.60 0.16 -1.94 16 5 C -0.12 -1.53 5.65 30.59 0.17 -1.36 16 6 C -0.12 -1.77 5.92 30.59 0.18 -1.59 16 7 C -0.12 -2.55 3.87 30.59 0.12 -2.44 16 8 C 0.10 2.54 1.64 44.91 0.07 2.61 16 9 H 0.03 0.83 7.98 -2.38 -0.02 0.81 16 10 N -0.53 -17.62 3.68 -871.13 -3.21 -20.83 16 11 C 0.06 2.30 5.19 86.32 0.45 2.75 16 12 C -0.09 -3.99 5.32 30.64 0.16 -3.83 16 13 C 0.02 0.91 1.75 -11.46 -0.02 0.89 16 14 C -0.61 -36.43 8.79 25.60 0.22 -36.20 16 15 H 0.01 0.84 7.99 -2.91 -0.02 0.82 16 16 C -0.02 -0.92 5.29 84.66 0.45 -0.47 16 17 N -0.94 -60.72 13.70 21.45 0.29 -60.43 16 18 Si 1.08 52.01 26.51 68.60 1.82 53.82 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.24 -10.47 5.83 99.48 0.58 -9.89 16 22 C -0.11 -4.80 5.09 30.65 0.16 -4.64 16 23 C 0.06 1.97 4.61 86.33 0.40 2.37 16 24 H 0.07 1.39 4.82 -2.39 -0.01 1.38 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.37 7.49 -2.39 -0.02 1.35 16 27 H 0.38 5.71 9.04 -74.06 -0.67 5.04 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.92 6.35 -2.39 -0.02 0.90 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.62 6.52 -2.39 -0.02 1.60 16 35 H 0.07 1.48 6.30 -2.39 -0.02 1.47 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.11 3.79 5.00 -2.39 -0.01 3.78 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.01 0.62 6.74 -2.39 -0.02 0.61 16 41 H 0.25 16.60 8.73 -92.71 -0.81 15.79 16 42 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.05 2.24 5.27 -2.39 -0.01 2.23 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 2.79 5.87 -2.39 -0.01 2.78 16 Total: -1.00 -69.89 318.52 0.65 -69.24 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.13 Total: 16.62 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 3.09 Total: -43.73 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.92 Total: -81.26 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.46 Total: -14.70 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 1.82 Total: 53.82 kcal Total: -69.89 0.65 -69.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699407205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.455 kcal (2) G-P(sol) polarization free energy of solvation -69.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds