Wall clock time and date at job start Mon Mar 30 2020 07:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47339 * 2 1 4 4 C 1.53006 * 109.47513 * 120.00320 * 2 1 3 5 5 C 1.52999 * 109.47193 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46841 * 299.99648 * 5 4 2 7 7 C 1.52999 * 109.47195 * 60.00263 * 6 5 4 8 8 C 1.52994 * 109.47331 * 299.99551 * 7 6 5 9 9 H 1.08996 * 109.47170 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47169 * 300.00193 * 8 7 6 11 11 C 1.36934 * 119.99994 * 358.81865 * 10 8 7 12 12 H 1.08002 * 120.00128 * 125.43826 * 11 10 8 13 13 C 1.38814 * 119.99945 * 305.43966 * 11 10 8 14 14 N 1.31618 * 120.00148 * 163.83871 * 13 11 10 15 15 Si 1.86798 * 119.99876 * 343.84137 * 13 11 10 16 16 H 1.48501 * 109.47413 * 92.49942 * 15 13 11 17 17 H 1.48498 * 109.47145 * 212.50109 * 15 13 11 18 18 H 1.48503 * 109.47294 * 332.49742 * 15 13 11 19 19 C 1.46504 * 119.99667 * 178.81529 * 10 8 7 20 20 C 1.54262 * 110.03115 * 237.90141 * 19 10 8 21 21 C 1.54960 * 104.16205 * 217.13954 * 20 19 10 22 22 C 1.54893 * 102.77620 * 37.89159 * 21 20 19 23 23 C 1.53878 * 110.02819 * 120.69096 * 19 10 8 24 24 H 1.08996 * 109.47223 * 317.73334 * 1 2 3 25 25 H 1.09002 * 109.47637 * 77.73499 * 1 2 3 26 26 H 1.09005 * 109.47057 * 197.73537 * 1 2 3 27 27 H 0.96693 * 114.00286 * 60.00295 * 3 2 1 28 28 H 1.08993 * 109.46649 * 59.99704 * 4 2 1 29 29 H 1.08995 * 109.46579 * 299.99690 * 4 2 1 30 30 H 1.08996 * 109.46850 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47225 * 59.99730 * 5 4 2 32 32 H 1.09005 * 109.46877 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47758 * 300.00107 * 6 5 4 34 34 H 1.09001 * 109.47182 * 59.99728 * 7 6 5 35 35 H 1.09002 * 109.47058 * 179.97438 * 7 6 5 36 36 H 0.96998 * 119.99825 * 180.02562 * 14 13 11 37 37 H 1.08995 * 110.01786 * 359.30151 * 19 10 8 38 38 H 1.08999 * 110.49110 * 335.79175 * 20 19 10 39 39 H 1.09007 * 110.48389 * 98.43187 * 20 19 10 40 40 H 1.08996 * 110.72046 * 279.57404 * 21 20 19 41 41 H 1.09004 * 110.92151 * 156.30048 * 21 20 19 42 42 H 1.08998 * 110.48314 * 203.40183 * 22 21 20 43 43 H 1.09002 * 110.48126 * 80.76108 * 22 21 20 44 44 H 1.08994 * 110.02936 * 238.56799 * 23 19 10 45 45 H 1.09001 * 110.03397 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0794 -1.4435 -0.0005 7 6 3.5694 -0.7222 -1.2497 8 6 2.0394 -0.7217 -1.2494 9 1 1.6761 -0.2075 -2.1391 10 7 1.5506 -2.1027 -1.2490 11 6 2.4398 -3.1438 -1.2735 12 1 2.3932 -3.9118 -0.5156 13 6 3.4012 -3.2121 -2.2725 14 7 4.4403 -4.0077 -2.1327 15 14 3.2203 -2.1746 -3.8153 16 1 3.9357 -0.8862 -3.6323 17 1 3.8001 -2.9027 -4.9723 18 1 1.7810 -1.9100 -4.0680 19 6 0.1104 -2.3699 -1.2225 20 6 -0.2446 -3.2318 0.0067 21 6 -1.3541 -4.1844 -0.5058 22 6 -0.8863 -4.5118 -1.9457 23 6 -0.2977 -3.1832 -2.4634 24 1 -0.3633 0.7605 0.6912 25 1 -0.3634 0.2183 -1.0042 26 1 -0.3633 -0.9789 0.3131 27 1 1.7211 1.8653 0.7650 28 1 1.6767 -1.7489 1.2491 29 1 1.6768 -0.2075 2.1391 30 1 3.9334 -1.2361 2.1385 31 1 3.9337 0.3057 1.2486 32 1 5.1695 -1.4435 -0.0010 33 1 3.7158 -2.4710 -0.0003 34 1 3.9331 0.3053 -1.2499 35 1 3.9326 -1.2361 -2.1397 36 1 5.1122 -4.0551 -2.8306 37 1 -0.4428 -1.4312 -1.1928 38 1 0.6242 -3.8011 0.3373 39 1 -0.6218 -2.6057 0.8155 40 1 -2.3201 -3.6797 -0.5188 41 1 -1.4008 -5.0892 0.1003 42 1 -1.7318 -4.8199 -2.5606 43 1 -0.1211 -5.2880 -1.9309 44 1 -1.0496 -2.6395 -3.0354 45 1 0.5756 -3.3786 -3.0856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699410948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:28 Heat of formation + Delta-G solvation = -6.130223 kcal Electronic energy + Delta-G solvation = -23834.587652 eV Core-core repulsion = 20853.451240 eV Total energy + Delta-G solvation = -2981.136412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.78997 -37.19287 -35.27646 -32.83211 -32.10949 -30.45692 -29.05996 -27.91540 -26.86397 -25.49960 -23.49460 -21.25075 -20.80452 -20.00333 -18.98285 -18.66828 -16.77374 -15.72289 -15.50445 -15.17229 -14.58494 -14.33582 -13.92390 -13.56296 -13.34489 -12.95129 -12.85482 -12.48426 -12.10736 -11.94160 -11.86084 -11.40522 -11.30497 -11.02879 -10.97115 -10.63381 -10.57916 -10.33586 -10.21919 -10.16321 -10.00101 -9.82880 -9.78198 -9.64816 -9.44096 -9.17493 -8.93883 -8.58593 -8.21795 -6.42106 -5.99404 -3.57117 3.34778 3.48717 3.54919 4.48883 4.60496 5.14915 5.27149 5.35517 5.40074 5.45407 5.46550 5.58336 5.69000 5.82675 6.01132 6.12393 6.12744 6.21478 6.23408 6.31739 6.34761 6.38530 6.43132 6.46601 6.50831 6.54578 6.56902 6.58085 6.63244 6.69155 6.81377 6.93488 6.96403 7.02233 7.15026 7.24598 7.26434 7.30448 7.40761 8.02266 8.14664 8.19742 8.56481 9.09526 9.68755 10.22805 11.10531 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.013102 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.205052 B = 2136.621714 C = 3095.197372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.117 3.883 3 O -0.562 6.562 4 C -0.127 4.127 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.118 4.118 8 C 0.187 3.813 9 H 0.026 0.974 10 N -0.587 5.587 11 C -0.260 4.260 12 H 0.074 0.926 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.872 3.128 16 H -0.275 1.275 17 H -0.307 1.307 18 H -0.263 1.263 19 C 0.146 3.854 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.135 4.135 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.360 0.640 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.131 0.869 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 4.966 4.616 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.075 3.925 3 O -0.366 6.366 4 C -0.165 4.165 5 C -0.145 4.145 6 C -0.160 4.160 7 C -0.155 4.155 8 C 0.081 3.919 9 H 0.044 0.956 10 N -0.310 5.310 11 C -0.389 4.389 12 H 0.091 0.909 13 C -0.145 4.145 14 N -0.532 5.532 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.235 1.235 18 H -0.188 1.188 19 C 0.040 3.960 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.174 4.174 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.206 0.794 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.149 0.851 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.614 4.703 3.975 9.792 hybrid contribution -0.260 0.849 -0.393 0.971 sum -7.874 5.551 3.582 10.279 Atomic orbital electron populations 1.23065 0.97481 1.02828 1.01165 1.21862 0.91388 0.81201 0.98079 1.86563 1.77416 1.24041 1.48539 1.22010 0.97000 1.01997 0.95470 1.21404 0.94885 0.99473 0.98756 1.21945 0.97759 1.04758 0.91578 1.21953 0.94273 0.98533 1.00761 1.20347 0.94197 0.85647 0.91690 0.95596 1.44119 1.00445 1.00314 1.86145 1.18124 1.09596 1.02938 1.08258 0.90850 1.25863 0.96414 0.95153 0.97091 1.69804 1.10118 1.39216 1.34059 0.87525 0.78959 0.79811 0.83450 1.20312 1.23539 1.18786 1.21722 0.85914 0.96424 0.91955 1.22859 0.98309 0.98000 0.98149 1.22420 0.97923 0.98816 0.96826 1.22233 0.99106 0.98607 0.95400 1.22606 1.00002 0.95404 0.99431 0.93978 0.92417 0.89394 0.79429 0.89833 0.94343 0.93794 0.93697 0.94947 0.85137 0.93774 0.90523 0.92647 0.90642 0.90108 0.93359 0.92872 0.92798 0.93565 0.91542 0.94227 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 7.11 37.15 0.26 -2.66 16 2 C 0.12 2.08 0.79 -90.61 -0.07 2.01 16 3 O -0.56 -9.64 11.63 -35.23 -0.41 -10.05 16 4 C -0.13 -2.21 4.68 -26.73 -0.13 -2.34 16 5 C -0.11 -2.01 5.78 -26.73 -0.15 -2.17 16 6 C -0.12 -2.73 5.21 -26.73 -0.14 -2.87 16 7 C -0.12 -2.70 4.14 -26.73 -0.11 -2.81 16 8 C 0.19 3.99 1.47 -67.93 -0.10 3.89 16 9 H 0.03 0.60 7.63 -51.93 -0.40 0.20 16 10 N -0.59 -12.53 1.04 -156.88 -0.16 -12.70 16 11 C -0.26 -6.38 4.79 -15.06 -0.07 -6.45 16 12 H 0.07 1.99 6.87 -52.49 -0.36 1.63 16 13 C 0.06 1.50 3.55 -17.43 -0.06 1.43 16 14 N -0.89 -25.01 13.97 55.49 0.78 -24.23 16 15 Si 0.87 21.62 23.19 -169.99 -3.94 17.68 16 16 H -0.28 -6.81 6.01 56.52 0.34 -6.47 16 17 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 18 H -0.26 -6.44 6.45 56.52 0.36 -6.08 16 19 C 0.15 2.73 2.34 -66.81 -0.16 2.57 16 20 C -0.13 -2.28 5.26 -25.04 -0.13 -2.41 16 21 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 22 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 23 C -0.14 -2.57 6.27 -25.61 -0.16 -2.73 16 24 H 0.04 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.06 0.92 7.01 -51.93 -0.36 0.56 16 26 H 0.09 1.35 3.58 -51.93 -0.19 1.17 16 27 H 0.36 4.61 9.01 45.56 0.41 5.02 16 28 H 0.08 1.57 6.82 -51.93 -0.35 1.22 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.82 7.68 -51.93 -0.40 0.42 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.13 3.23 4.49 -51.93 -0.23 3.00 16 34 H 0.04 0.99 7.68 -51.93 -0.40 0.59 16 35 H 0.08 1.92 1.84 -51.93 -0.10 1.82 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.08 1.33 3.88 -51.93 -0.20 1.13 16 38 H 0.08 1.57 6.39 -51.93 -0.33 1.24 16 39 H 0.05 0.74 6.53 -51.93 -0.34 0.40 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.75 5.44 -51.93 -0.28 1.47 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -26.66 300.92 -7.13 -33.79 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.57 Total: 9.62 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.36 Total: -18.66 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.61 Total: -36.93 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.41 Total: -10.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.94 Total: 17.68 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.66 -7.13 -33.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699410948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.664 kcal (2) G-P(sol) polarization free energy of solvation -26.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds