Wall clock time and date at job start Mon Mar 30 2020 07:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47339 * 2 1 4 4 C 1.53006 * 109.47513 * 120.00320 * 2 1 3 5 5 C 1.52999 * 109.47193 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46841 * 299.99648 * 5 4 2 7 7 C 1.52999 * 109.47195 * 60.00263 * 6 5 4 8 8 C 1.52994 * 109.47331 * 299.99551 * 7 6 5 9 9 H 1.08996 * 109.47170 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47169 * 300.00193 * 8 7 6 11 11 C 1.36934 * 119.99994 * 358.81865 * 10 8 7 12 12 H 1.08002 * 120.00128 * 125.43826 * 11 10 8 13 13 C 1.38814 * 119.99945 * 305.43966 * 11 10 8 14 14 N 1.31618 * 120.00148 * 163.83871 * 13 11 10 15 15 Si 1.86798 * 119.99876 * 343.84137 * 13 11 10 16 16 H 1.48501 * 109.47413 * 92.49942 * 15 13 11 17 17 H 1.48498 * 109.47145 * 212.50109 * 15 13 11 18 18 H 1.48503 * 109.47294 * 332.49742 * 15 13 11 19 19 C 1.46504 * 119.99667 * 178.81529 * 10 8 7 20 20 C 1.54262 * 110.03115 * 237.90141 * 19 10 8 21 21 C 1.54960 * 104.16205 * 217.13954 * 20 19 10 22 22 C 1.54893 * 102.77620 * 37.89159 * 21 20 19 23 23 C 1.53878 * 110.02819 * 120.69096 * 19 10 8 24 24 H 1.08996 * 109.47223 * 317.73334 * 1 2 3 25 25 H 1.09002 * 109.47637 * 77.73499 * 1 2 3 26 26 H 1.09005 * 109.47057 * 197.73537 * 1 2 3 27 27 H 0.96693 * 114.00286 * 60.00295 * 3 2 1 28 28 H 1.08993 * 109.46649 * 59.99704 * 4 2 1 29 29 H 1.08995 * 109.46579 * 299.99690 * 4 2 1 30 30 H 1.08996 * 109.46850 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47225 * 59.99730 * 5 4 2 32 32 H 1.09005 * 109.46877 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47758 * 300.00107 * 6 5 4 34 34 H 1.09001 * 109.47182 * 59.99728 * 7 6 5 35 35 H 1.09002 * 109.47058 * 179.97438 * 7 6 5 36 36 H 0.96998 * 119.99825 * 180.02562 * 14 13 11 37 37 H 1.08995 * 110.01786 * 359.30151 * 19 10 8 38 38 H 1.08999 * 110.49110 * 335.79175 * 20 19 10 39 39 H 1.09007 * 110.48389 * 98.43187 * 20 19 10 40 40 H 1.08996 * 110.72046 * 279.57404 * 21 20 19 41 41 H 1.09004 * 110.92151 * 156.30048 * 21 20 19 42 42 H 1.08998 * 110.48314 * 203.40183 * 22 21 20 43 43 H 1.09002 * 110.48126 * 80.76108 * 22 21 20 44 44 H 1.08994 * 110.02936 * 238.56799 * 23 19 10 45 45 H 1.09001 * 110.03397 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0794 -1.4435 -0.0005 7 6 3.5694 -0.7222 -1.2497 8 6 2.0394 -0.7217 -1.2494 9 1 1.6761 -0.2075 -2.1391 10 7 1.5506 -2.1027 -1.2490 11 6 2.4398 -3.1438 -1.2735 12 1 2.3932 -3.9118 -0.5156 13 6 3.4012 -3.2121 -2.2725 14 7 4.4403 -4.0077 -2.1327 15 14 3.2203 -2.1746 -3.8153 16 1 3.9357 -0.8862 -3.6323 17 1 3.8001 -2.9027 -4.9723 18 1 1.7810 -1.9100 -4.0680 19 6 0.1104 -2.3699 -1.2225 20 6 -0.2446 -3.2318 0.0067 21 6 -1.3541 -4.1844 -0.5058 22 6 -0.8863 -4.5118 -1.9457 23 6 -0.2977 -3.1832 -2.4634 24 1 -0.3633 0.7605 0.6912 25 1 -0.3634 0.2183 -1.0042 26 1 -0.3633 -0.9789 0.3131 27 1 1.7211 1.8653 0.7650 28 1 1.6767 -1.7489 1.2491 29 1 1.6768 -0.2075 2.1391 30 1 3.9334 -1.2361 2.1385 31 1 3.9337 0.3057 1.2486 32 1 5.1695 -1.4435 -0.0010 33 1 3.7158 -2.4710 -0.0003 34 1 3.9331 0.3053 -1.2499 35 1 3.9326 -1.2361 -2.1397 36 1 5.1122 -4.0551 -2.8306 37 1 -0.4428 -1.4312 -1.1928 38 1 0.6242 -3.8011 0.3373 39 1 -0.6218 -2.6057 0.8155 40 1 -2.3201 -3.6797 -0.5188 41 1 -1.4008 -5.0892 0.1003 42 1 -1.7318 -4.8199 -2.5606 43 1 -0.1211 -5.2880 -1.9309 44 1 -1.0496 -2.6395 -3.0354 45 1 0.5756 -3.3786 -3.0856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699410948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:27 Heat of formation + Delta-G solvation = -23.047991 kcal Electronic energy + Delta-G solvation = -23835.321261 eV Core-core repulsion = 20853.451240 eV Total energy + Delta-G solvation = -2981.870021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35787 -38.61831 -36.84639 -34.48749 -33.81076 -32.07053 -30.65633 -29.32407 -28.39394 -27.13827 -25.17165 -22.85721 -22.41130 -21.33981 -20.53672 -20.35495 -18.61266 -17.16865 -17.00170 -16.74561 -16.13909 -16.09059 -15.52648 -15.17157 -14.87920 -14.67430 -14.26468 -13.95014 -13.80085 -13.60838 -13.43366 -13.06676 -12.72893 -12.64839 -12.47911 -12.20399 -12.05631 -11.94771 -11.78941 -11.62638 -11.54142 -11.48071 -11.39828 -11.20174 -11.16052 -10.70947 -10.44516 -10.32611 -10.20763 -8.25021 -8.03761 -5.58704 1.31395 1.41401 1.49502 2.45726 3.01673 3.33312 3.72160 3.93360 4.02320 4.05039 4.08977 4.13902 4.33838 4.46923 4.55296 4.64045 4.70708 4.72449 4.79772 4.83219 4.88944 4.95990 4.99554 5.02899 5.03372 5.07888 5.13339 5.18096 5.23853 5.27972 5.30901 5.41150 5.47489 5.54439 5.60592 5.64695 5.68362 5.72212 5.76440 6.08779 6.18571 6.50502 7.08453 7.25952 7.75557 8.29250 9.07363 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.013102 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.205052 B = 2136.621714 C = 3095.197372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.124 3.876 3 O -0.574 6.574 4 C -0.122 4.122 5 C -0.103 4.103 6 C -0.118 4.118 7 C -0.121 4.121 8 C 0.183 3.817 9 H 0.010 0.990 10 N -0.591 5.591 11 C -0.216 4.216 12 H 0.044 0.956 13 C 0.019 3.981 14 N -0.936 5.936 15 Si 0.910 3.090 16 H -0.278 1.278 17 H -0.323 1.323 18 H -0.258 1.258 19 C 0.139 3.861 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.141 4.141 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.384 0.616 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.257 0.743 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.151 6.823 6.442 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.082 3.918 3 O -0.381 6.381 4 C -0.159 4.159 5 C -0.140 4.140 6 C -0.155 4.155 7 C -0.158 4.158 8 C 0.077 3.923 9 H 0.028 0.972 10 N -0.315 5.315 11 C -0.346 4.346 12 H 0.062 0.938 13 C -0.178 4.178 14 N -0.579 5.579 15 Si 0.741 3.259 16 H -0.206 1.206 17 H -0.252 1.252 18 H -0.183 1.183 19 C 0.034 3.966 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.181 4.181 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.233 0.767 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.737 6.592 5.818 13.877 hybrid contribution 0.690 0.320 -0.922 1.195 sum -10.047 6.912 4.896 13.141 Atomic orbital electron populations 1.22965 0.95077 1.04134 1.01881 1.21541 0.93033 0.81418 0.95781 1.86508 1.77804 1.23627 1.50200 1.21965 0.95572 1.01565 0.96843 1.21349 0.96241 0.99473 0.96955 1.21764 0.96810 1.03416 0.93484 1.21925 0.95897 0.98099 0.99903 1.20306 0.92938 0.85676 0.93383 0.97206 1.44141 1.01390 0.99702 1.86257 1.17808 1.08693 1.02266 1.05854 0.93844 1.26160 0.96787 0.96125 0.98746 1.69894 1.11420 1.41937 1.34618 0.86925 0.78722 0.78681 0.81549 1.20600 1.25228 1.18270 1.22002 0.83982 0.97838 0.92750 1.22743 0.97922 0.98061 0.97923 1.22401 0.98298 0.99085 0.95188 1.22203 0.99117 0.96637 0.97252 1.22634 0.99098 0.97071 0.99249 0.90674 0.92892 0.89173 0.76709 0.91388 0.90664 0.92733 0.92688 0.96485 0.88160 0.93696 0.93173 0.93371 0.88468 0.93316 0.90848 0.90000 0.91722 0.91184 0.94185 0.92370 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.81 7.11 71.98 0.51 -4.30 16 2 C 0.12 4.02 0.79 -10.79 -0.01 4.01 16 3 O -0.57 -17.49 11.63 -148.98 -1.73 -19.22 16 4 C -0.12 -3.83 4.68 30.60 0.14 -3.68 16 5 C -0.10 -3.64 5.78 30.59 0.18 -3.46 16 6 C -0.12 -5.27 5.21 30.59 0.16 -5.11 16 7 C -0.12 -5.58 4.14 30.59 0.13 -5.46 16 8 C 0.18 7.61 1.47 44.99 0.07 7.67 16 9 H 0.01 0.46 7.63 -2.39 -0.02 0.44 16 10 N -0.59 -25.06 1.04 -650.24 -0.67 -25.74 16 11 C -0.22 -10.94 4.79 84.03 0.40 -10.54 16 12 H 0.04 2.49 6.87 -2.91 -0.02 2.47 16 13 C 0.02 1.07 3.55 84.86 0.30 1.37 16 14 N -0.94 -55.41 13.97 21.65 0.30 -55.10 16 15 Si 0.91 46.44 23.19 68.60 1.59 48.03 16 16 H -0.28 -14.11 6.01 99.48 0.60 -13.52 16 17 H -0.32 -17.11 7.11 99.48 0.71 -16.40 16 18 H -0.26 -12.76 6.45 99.48 0.64 -12.12 16 19 C 0.14 4.94 2.34 45.71 0.11 5.04 16 20 C -0.13 -4.01 5.26 31.69 0.17 -3.84 16 21 C -0.11 -3.01 6.91 31.91 0.22 -2.79 16 22 C -0.11 -3.63 6.83 31.67 0.22 -3.42 16 23 C -0.14 -5.19 6.27 31.32 0.20 -4.99 16 24 H 0.07 1.51 8.09 -2.39 -0.02 1.50 16 25 H 0.05 1.46 7.01 -2.39 -0.02 1.44 16 26 H 0.09 2.33 3.58 -2.38 -0.01 2.32 16 27 H 0.38 7.84 9.01 -74.06 -0.67 7.17 16 28 H 0.07 2.38 6.82 -2.39 -0.02 2.37 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.85 7.68 -2.39 -0.02 1.83 16 32 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.10 5.14 4.49 -2.39 -0.01 5.13 16 34 H 0.04 2.02 7.68 -2.39 -0.02 2.00 16 35 H 0.05 2.59 1.84 -2.39 0.00 2.58 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.10 3.08 3.88 -2.39 -0.01 3.07 16 38 H 0.05 1.86 6.39 -2.39 -0.02 1.84 16 39 H 0.07 1.95 6.53 -2.38 -0.02 1.93 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.74 5.44 -2.39 -0.01 1.72 16 Total: -1.00 -61.07 300.92 2.42 -58.65 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.15 Total: 22.89 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 2.79 Total: -29.50 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -0.37 Total: -80.84 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.73 Total: -19.22 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.59 Total: 48.03 kcal Total: -61.07 2.42 -58.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699410948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.603 kcal (2) G-P(sol) polarization free energy of solvation -61.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds