Wall clock time and date at job start Mon Mar 30 2020 07:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47289 * 2 1 4 4 C 1.52996 * 109.47287 * 239.99802 * 2 1 3 5 5 C 1.52999 * 109.47260 * 299.99986 * 4 2 1 6 6 C 1.52993 * 109.47440 * 300.00115 * 5 4 2 7 7 C 1.52999 * 109.47342 * 59.99794 * 6 5 4 8 8 C 1.52999 * 109.47022 * 300.00462 * 7 6 5 9 9 H 1.09004 * 109.47405 * 299.99640 * 8 7 6 10 10 N 1.46910 * 109.47250 * 179.97438 * 8 7 6 11 11 C 1.46843 * 110.99819 * 40.21498 * 10 8 7 12 12 C 1.53037 * 109.52027 * 185.84234 * 11 10 8 13 13 C 1.53121 * 109.27815 * 300.81567 * 12 11 10 14 14 C 1.50697 * 109.52375 * 177.56077 * 13 12 11 15 15 H 1.08001 * 119.99934 * 240.32505 * 14 13 12 16 16 C 1.37881 * 120.00162 * 60.31794 * 14 13 12 17 17 N 1.31512 * 119.99643 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00356 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47053 * 89.99967 * 18 16 14 20 20 H 1.48493 * 109.47131 * 210.00259 * 18 16 14 21 21 H 1.48505 * 109.46977 * 330.00143 * 18 16 14 22 22 C 1.53125 * 109.15646 * 57.65737 * 13 12 11 23 23 C 1.46846 * 110.99709 * 164.42606 * 10 8 7 24 24 H 1.08998 * 109.47431 * 301.17199 * 1 2 3 25 25 H 1.09002 * 109.47088 * 61.17651 * 1 2 3 26 26 H 1.09000 * 109.47052 * 181.17434 * 1 2 3 27 27 H 0.96703 * 113.99879 * 300.00174 * 3 2 1 28 28 H 1.09000 * 109.47168 * 60.00320 * 4 2 1 29 29 H 1.09005 * 109.47145 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47228 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.46668 * 60.00166 * 5 4 2 32 32 H 1.09005 * 109.47231 * 299.99706 * 6 5 4 33 33 H 1.09006 * 109.47527 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47030 * 59.99789 * 7 6 5 35 35 H 1.09000 * 109.47521 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46068 * 305.85808 * 11 10 8 37 37 H 1.08998 * 109.46770 * 65.82530 * 11 10 8 38 38 H 1.08999 * 109.49857 * 180.87994 * 12 11 10 39 39 H 1.08997 * 109.53703 * 60.78176 * 12 11 10 40 40 H 1.08999 * 109.52584 * 297.75666 * 13 12 11 41 41 H 0.96999 * 119.99971 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.49741 * 182.40090 * 22 13 12 43 43 H 1.09004 * 109.50359 * 62.28569 * 22 13 12 44 44 H 1.08999 * 109.46153 * 294.17027 * 23 10 8 45 45 H 1.08994 * 109.46385 * 54.14527 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2493 8 6 2.0399 -0.7213 1.2493 9 1 3.1299 -0.7212 1.2493 10 7 1.5497 -0.0286 2.4485 11 6 1.6031 -0.9082 3.6231 12 6 0.9526 -0.2065 4.8174 13 6 1.6963 1.1014 5.1018 14 6 1.0236 1.8262 6.2389 15 1 0.6158 2.8141 6.0836 16 6 0.9286 1.2282 7.4777 17 7 1.4255 0.0253 7.6669 18 14 0.0954 2.1269 8.8874 19 1 -1.3534 1.8013 8.8945 20 1 0.7045 1.7029 10.1736 21 1 0.2728 3.5912 8.7146 22 6 1.6675 1.9788 3.8473 23 6 2.2973 1.2138 2.6810 24 1 -0.3634 0.5319 0.8793 25 1 -0.3633 0.4955 -0.9004 26 1 -0.3633 -1.0275 0.0211 27 1 1.7210 1.8653 -0.7651 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7217 -1.2489 30 1 1.8931 -2.6775 -2.1394 31 1 0.4400 -2.1637 -1.2492 32 1 3.1300 -2.8851 0.0001 33 1 1.6763 -3.9126 0.0003 34 1 0.4399 -2.1638 1.2492 35 1 1.8936 -2.6774 2.1393 36 1 1.0670 -1.8329 3.4089 37 1 2.6424 -1.1374 3.8584 38 1 1.0063 -0.8535 5.6930 39 1 -0.0908 0.0104 4.5887 40 1 2.7300 0.8819 5.3692 41 1 1.3590 -0.3953 8.5384 42 1 2.2320 2.8932 4.0299 43 1 0.6355 2.2303 3.6026 44 1 3.3333 0.9747 2.9207 45 1 2.2654 1.8304 1.7828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699413773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:06 Heat of formation + Delta-G solvation = -63.928948 kcal Electronic energy + Delta-G solvation = -22341.359586 eV Core-core repulsion = 19357.716834 eV Total energy + Delta-G solvation = -2983.642752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12004 -37.27968 -35.57090 -33.64166 -31.45836 -30.56427 -29.54535 -28.95049 -26.62874 -25.07751 -23.11586 -22.21838 -21.08814 -20.81993 -18.63109 -18.43840 -16.95551 -16.20092 -15.63388 -15.33284 -14.72437 -14.45355 -13.98976 -13.82210 -13.43068 -13.29728 -12.73336 -12.59422 -12.52713 -12.27964 -12.02259 -11.93488 -11.52607 -11.37525 -11.17810 -11.07485 -10.89319 -10.71614 -10.61639 -10.49410 -10.25033 -10.04852 -9.93930 -9.84437 -9.62520 -9.29139 -8.65927 -8.56336 -8.19897 -7.53254 -5.89253 -3.94050 3.36002 3.42306 3.46095 4.20805 4.39325 4.51783 4.66609 4.91903 4.94037 5.15207 5.25544 5.31479 5.35284 5.40657 5.45906 5.62351 5.74436 5.88508 5.90411 5.94969 5.96648 6.04260 6.08964 6.14659 6.20793 6.25086 6.34136 6.43826 6.44769 6.64851 6.66894 6.75557 6.89227 7.11830 7.24539 7.30941 7.57266 7.75755 7.83204 7.89855 7.99403 8.17440 8.27796 8.58901 9.09985 9.69713 11.16806 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.004857 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.080317 B = 5763.844838 C = 6163.533340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 O -0.548 6.548 4 C -0.143 4.143 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.101 3.899 9 H 0.037 0.963 10 N -0.522 5.522 11 C 0.050 3.950 12 C -0.102 4.102 13 C 0.047 3.953 14 C -0.507 4.507 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.104 4.104 23 C 0.052 3.948 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.363 0.637 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.018 0.982 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.018 0.982 41 H 0.258 0.742 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.012 0.988 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -4.484 -18.069 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.102 3.898 3 O -0.354 6.354 4 C -0.182 4.182 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.159 4.159 8 C -0.009 4.009 9 H 0.055 0.945 10 N -0.246 5.246 11 C -0.077 4.077 12 C -0.140 4.140 13 C 0.028 3.972 14 C -0.546 4.546 15 H 0.071 0.929 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.142 4.142 23 C -0.075 4.075 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.210 0.790 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.027 -4.683 -17.419 18.038 hybrid contribution 0.211 0.332 0.447 0.596 sum 0.184 -4.351 -16.972 17.522 Atomic orbital electron populations 1.22413 0.95355 1.02576 1.02266 1.21152 0.93322 0.81789 0.93550 1.86654 1.77183 1.23366 1.48192 1.22245 1.01399 0.96492 0.98038 1.21548 1.01145 0.95008 0.97831 1.21574 1.00769 0.98921 0.94558 1.21857 1.01972 0.94204 0.97908 1.21451 0.96735 0.92311 0.90354 0.94462 1.61996 1.54867 1.05520 1.02239 1.22408 0.98405 0.95524 0.91368 1.21631 0.98046 0.99547 0.94790 1.18692 0.95810 0.91742 0.90926 1.21249 1.36699 1.01958 0.94648 0.92861 1.24967 0.95620 0.94961 0.98510 1.69886 1.46274 1.14100 1.23023 0.86655 0.79633 0.80105 0.81947 1.20791 1.21395 1.20028 1.21654 0.99522 0.97779 0.95247 1.22447 0.93572 0.91332 1.00131 0.90060 0.93818 0.91774 0.78999 0.91943 0.91599 0.92181 0.91455 0.92132 0.91779 0.90583 0.90831 0.92218 0.96397 0.89227 0.94024 0.96403 0.93232 0.93649 0.92839 0.96958 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 7.94 37.16 0.30 -1.78 16 2 C 0.14 1.81 0.91 -90.62 -0.08 1.72 16 3 O -0.55 -7.28 9.74 -35.23 -0.34 -7.63 16 4 C -0.14 -1.46 5.07 -26.73 -0.14 -1.60 16 5 C -0.12 -1.10 5.65 -26.73 -0.15 -1.25 16 6 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 7 C -0.12 -1.58 3.92 -26.73 -0.10 -1.69 16 8 C 0.10 1.52 1.63 -67.71 -0.11 1.41 16 9 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 10 N -0.52 -9.60 3.77 -226.69 -0.85 -10.45 16 11 C 0.05 1.01 4.65 -3.84 -0.02 1.00 16 12 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 13 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 14 C -0.51 -14.40 8.56 -34.44 -0.29 -14.69 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -26.05 11.37 55.43 0.63 -25.42 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.10 -2.34 5.32 -26.65 -0.14 -2.48 16 23 C 0.05 1.04 5.19 -3.83 -0.02 1.02 16 24 H 0.08 1.23 7.64 -51.93 -0.40 0.83 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 27 H 0.36 3.35 9.05 45.56 0.41 3.76 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.62 6.46 -51.93 -0.34 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.00 6.40 -51.93 -0.33 0.67 16 35 H 0.07 1.01 6.28 -51.93 -0.33 0.69 16 36 H 0.06 1.09 5.86 -51.93 -0.30 0.79 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.41 6.18 -51.93 -0.32 2.09 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 1.76 4.92 -51.93 -0.26 1.50 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -29.74 322.45 -9.22 -38.96 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.14 Total: 2.66 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.35 Total: -19.75 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.22 Total: -35.87 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.34 Total: -7.63 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.74 -9.22 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699413773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.967 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds