Wall clock time and date at job start Mon Mar 30 2020 07:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47289 * 2 1 4 4 C 1.52996 * 109.47287 * 239.99802 * 2 1 3 5 5 C 1.52999 * 109.47260 * 299.99986 * 4 2 1 6 6 C 1.52993 * 109.47440 * 300.00115 * 5 4 2 7 7 C 1.52999 * 109.47342 * 59.99794 * 6 5 4 8 8 C 1.52999 * 109.47022 * 300.00462 * 7 6 5 9 9 H 1.09004 * 109.47405 * 299.99640 * 8 7 6 10 10 N 1.46910 * 109.47250 * 179.97438 * 8 7 6 11 11 C 1.46843 * 110.99819 * 40.21498 * 10 8 7 12 12 C 1.53037 * 109.52027 * 185.84234 * 11 10 8 13 13 C 1.53121 * 109.27815 * 300.81567 * 12 11 10 14 14 C 1.50697 * 109.52375 * 177.56077 * 13 12 11 15 15 H 1.08001 * 119.99934 * 240.32505 * 14 13 12 16 16 C 1.37881 * 120.00162 * 60.31794 * 14 13 12 17 17 N 1.31512 * 119.99643 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00356 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47053 * 89.99967 * 18 16 14 20 20 H 1.48493 * 109.47131 * 210.00259 * 18 16 14 21 21 H 1.48505 * 109.46977 * 330.00143 * 18 16 14 22 22 C 1.53125 * 109.15646 * 57.65737 * 13 12 11 23 23 C 1.46846 * 110.99709 * 164.42606 * 10 8 7 24 24 H 1.08998 * 109.47431 * 301.17199 * 1 2 3 25 25 H 1.09002 * 109.47088 * 61.17651 * 1 2 3 26 26 H 1.09000 * 109.47052 * 181.17434 * 1 2 3 27 27 H 0.96703 * 113.99879 * 300.00174 * 3 2 1 28 28 H 1.09000 * 109.47168 * 60.00320 * 4 2 1 29 29 H 1.09005 * 109.47145 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47228 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.46668 * 60.00166 * 5 4 2 32 32 H 1.09005 * 109.47231 * 299.99706 * 6 5 4 33 33 H 1.09006 * 109.47527 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47030 * 59.99789 * 7 6 5 35 35 H 1.09000 * 109.47521 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46068 * 305.85808 * 11 10 8 37 37 H 1.08998 * 109.46770 * 65.82530 * 11 10 8 38 38 H 1.08999 * 109.49857 * 180.87994 * 12 11 10 39 39 H 1.08997 * 109.53703 * 60.78176 * 12 11 10 40 40 H 1.08999 * 109.52584 * 297.75666 * 13 12 11 41 41 H 0.96999 * 119.99971 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.49741 * 182.40090 * 22 13 12 43 43 H 1.09004 * 109.50359 * 62.28569 * 22 13 12 44 44 H 1.08999 * 109.46153 * 294.17027 * 23 10 8 45 45 H 1.08994 * 109.46385 * 54.14527 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2493 8 6 2.0399 -0.7213 1.2493 9 1 3.1299 -0.7212 1.2493 10 7 1.5497 -0.0286 2.4485 11 6 1.6031 -0.9082 3.6231 12 6 0.9526 -0.2065 4.8174 13 6 1.6963 1.1014 5.1018 14 6 1.0236 1.8262 6.2389 15 1 0.6158 2.8141 6.0836 16 6 0.9286 1.2282 7.4777 17 7 1.4255 0.0253 7.6669 18 14 0.0954 2.1269 8.8874 19 1 -1.3534 1.8013 8.8945 20 1 0.7045 1.7029 10.1736 21 1 0.2728 3.5912 8.7146 22 6 1.6675 1.9788 3.8473 23 6 2.2973 1.2138 2.6810 24 1 -0.3634 0.5319 0.8793 25 1 -0.3633 0.4955 -0.9004 26 1 -0.3633 -1.0275 0.0211 27 1 1.7210 1.8653 -0.7651 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7217 -1.2489 30 1 1.8931 -2.6775 -2.1394 31 1 0.4400 -2.1637 -1.2492 32 1 3.1300 -2.8851 0.0001 33 1 1.6763 -3.9126 0.0003 34 1 0.4399 -2.1638 1.2492 35 1 1.8936 -2.6774 2.1393 36 1 1.0670 -1.8329 3.4089 37 1 2.6424 -1.1374 3.8584 38 1 1.0063 -0.8535 5.6930 39 1 -0.0908 0.0104 4.5887 40 1 2.7300 0.8819 5.3692 41 1 1.3590 -0.3953 8.5384 42 1 2.2320 2.8932 4.0299 43 1 0.6355 2.2303 3.6026 44 1 3.3333 0.9747 2.9207 45 1 2.2654 1.8304 1.7828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699413773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:06 Heat of formation + Delta-G solvation = -83.037221 kcal Electronic energy + Delta-G solvation = -22342.188183 eV Core-core repulsion = 19357.716834 eV Total energy + Delta-G solvation = -2984.471349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27206 -38.84840 -36.56918 -35.45695 -33.26311 -31.69552 -31.16094 -30.24701 -27.93913 -26.74889 -24.54877 -23.77711 -22.32338 -22.22320 -20.32171 -19.66297 -18.49462 -17.85716 -16.91173 -16.61171 -16.38568 -15.71630 -15.48715 -14.95661 -14.74713 -14.62300 -14.31604 -14.19196 -13.97537 -13.84728 -13.25153 -13.08653 -12.84658 -12.82892 -12.63334 -12.44922 -12.33129 -12.26500 -12.12385 -11.89646 -11.84264 -11.55776 -11.44131 -11.24749 -11.00781 -10.78638 -10.60146 -10.41362 -10.25602 -9.08864 -8.07484 -6.21474 1.40681 1.41025 1.51759 2.43863 3.01984 3.18656 3.29088 3.73131 3.98957 3.99137 4.22216 4.27160 4.28538 4.32721 4.42006 4.44023 4.46243 4.52624 4.66590 4.76360 4.82923 4.89562 4.91558 4.99140 5.01157 5.06886 5.10795 5.19583 5.20290 5.23949 5.27972 5.33422 5.39185 5.43772 5.52378 5.58455 5.63272 5.70150 6.00986 6.06019 6.37625 6.41026 6.42815 6.89771 7.05503 7.46060 8.97146 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.004857 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.080317 B = 5763.844838 C = 6163.533340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 O -0.570 6.570 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.120 4.120 8 C 0.095 3.905 9 H 0.021 0.979 10 N -0.520 5.520 11 C 0.062 3.938 12 C -0.092 4.092 13 C 0.044 3.956 14 C -0.534 4.534 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.956 3.044 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.270 1.270 22 C -0.096 4.096 23 C 0.062 3.938 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.383 0.617 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.002 0.998 38 H 0.060 0.940 39 H 0.031 0.969 40 H -0.020 1.020 41 H 0.260 0.740 42 H 0.044 0.956 43 H 0.050 0.950 44 H -0.004 1.004 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 -4.728 -20.263 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.104 3.896 3 O -0.379 6.379 4 C -0.175 4.175 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.013 4.013 9 H 0.039 0.961 10 N -0.244 5.244 11 C -0.065 4.065 12 C -0.130 4.130 13 C 0.025 3.975 14 C -0.572 4.572 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.133 4.133 23 C -0.065 4.065 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.020 0.980 38 H 0.078 0.922 39 H 0.050 0.950 40 H -0.002 1.002 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.015 0.985 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.935 -4.921 -19.643 20.271 hybrid contribution 0.523 0.419 1.125 1.309 sum -0.412 -4.501 -18.518 19.062 Atomic orbital electron populations 1.22349 0.94876 1.02884 1.01953 1.21123 0.93515 0.81718 0.93255 1.86527 1.77553 1.23975 1.49845 1.22182 1.00990 0.97017 0.97267 1.21563 1.01557 0.94284 0.97858 1.21560 1.00630 0.99592 0.93632 1.21837 1.01970 0.92850 0.99099 1.21664 0.95906 0.93896 0.89842 0.96131 1.61987 1.54856 1.05021 1.02579 1.22195 0.97229 0.96252 0.90866 1.21389 0.97514 0.98555 0.95545 1.18664 0.93475 0.93160 0.92152 1.21582 1.37397 1.02166 0.96015 0.93223 1.25765 0.96119 0.95721 1.01040 1.70029 1.46879 1.15297 1.23655 0.85597 0.78728 0.79005 0.78572 1.19950 1.20821 1.19418 1.21520 0.99546 0.97497 0.94784 1.22343 0.92404 0.92139 0.99639 0.93239 0.91358 0.91035 0.76681 0.89612 0.92253 0.90118 0.90757 0.92390 0.90134 0.90424 0.92202 0.89911 0.97969 0.92161 0.95002 1.00162 0.93085 0.93706 0.93148 0.98548 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 7.94 71.98 0.57 -3.04 16 2 C 0.14 3.34 0.91 -10.79 -0.01 3.33 16 3 O -0.57 -13.99 9.74 -148.98 -1.45 -15.44 16 4 C -0.14 -2.31 5.07 30.59 0.16 -2.16 16 5 C -0.12 -1.70 5.65 30.59 0.17 -1.53 16 6 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16 7 C -0.12 -2.95 3.92 30.59 0.12 -2.83 16 8 C 0.10 2.81 1.63 44.91 0.07 2.88 16 9 H 0.02 0.68 8.00 -2.39 -0.02 0.66 16 10 N -0.52 -19.26 3.77 -871.11 -3.28 -22.54 16 11 C 0.06 2.59 4.65 86.33 0.40 2.99 16 12 C -0.09 -4.65 5.12 30.65 0.16 -4.49 16 13 C 0.04 2.39 2.16 -11.46 -0.02 2.37 16 14 C -0.53 -31.21 8.56 25.60 0.22 -30.99 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 16 C 0.01 0.68 5.31 84.66 0.45 1.13 16 17 N -0.92 -55.11 11.37 21.45 0.24 -54.87 16 18 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 C -0.10 -4.42 5.32 30.65 0.16 -4.26 16 23 C 0.06 2.50 5.19 86.33 0.45 2.95 16 24 H 0.05 1.42 7.64 -2.39 -0.02 1.41 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.46 4.81 -2.39 -0.01 1.45 16 27 H 0.38 5.97 9.05 -74.06 -0.67 5.30 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.04 6.46 -2.38 -0.02 1.02 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 1.89 6.40 -2.38 -0.02 1.88 16 35 H 0.06 1.62 6.28 -2.39 -0.01 1.60 16 36 H 0.08 3.05 5.86 -2.39 -0.01 3.03 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.06 3.40 6.18 -2.39 -0.01 3.38 16 39 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 40 H -0.02 -1.21 8.14 -2.39 -0.02 -1.22 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.04 2.02 8.14 -2.39 -0.02 2.01 16 43 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.11 4.17 4.92 -2.39 -0.01 4.15 16 Total: -1.00 -66.17 322.45 0.90 -65.26 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.29 Total: 15.91 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 3.08 Total: -35.57 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -3.04 Total: -77.40 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.45 Total: -15.44 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -66.17 0.90 -65.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699413773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.776 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds