Wall clock time and date at job start Mon Mar 30 2020 07:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.46837 * 2 1 4 4 C 1.52995 * 109.47370 * 239.99737 * 2 1 3 5 5 C 1.53000 * 109.47022 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47048 * 60.00448 * 5 4 2 7 7 C 1.52995 * 109.46843 * 299.99661 * 6 5 4 8 8 C 1.52997 * 109.46763 * 119.99698 * 2 1 3 9 9 H 1.09001 * 109.47553 * 60.00831 * 8 2 1 10 10 N 1.46895 * 109.47475 * 299.99883 * 8 2 1 11 11 C 1.46853 * 110.99944 * 161.48244 * 10 8 2 12 12 C 1.53042 * 109.52054 * 185.84341 * 11 10 8 13 13 C 1.53124 * 109.27800 * 300.81992 * 12 11 10 14 14 C 1.50701 * 109.52063 * 177.56317 * 13 12 11 15 15 H 1.08006 * 119.99668 * 240.32018 * 14 13 12 16 16 C 1.37871 * 120.00096 * 60.31945 * 14 13 12 17 17 N 1.31515 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47196 * 59.99891 * 18 16 14 20 20 H 1.48498 * 109.46884 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46950 * 299.99791 * 18 16 14 22 22 C 1.53115 * 109.15737 * 57.65851 * 13 12 11 23 23 C 1.46846 * 111.00583 * 285.69380 * 10 8 2 24 24 H 1.08997 * 109.46884 * 185.15133 * 1 2 3 25 25 H 1.09000 * 109.47600 * 305.15448 * 1 2 3 26 26 H 1.09001 * 109.46950 * 65.15893 * 1 2 3 27 27 H 0.96702 * 114.00355 * 300.00071 * 3 2 1 28 28 H 1.08998 * 109.46990 * 300.00294 * 4 2 1 29 29 H 1.09005 * 109.46907 * 59.99893 * 4 2 1 30 30 H 1.09006 * 109.46752 * 180.02562 * 5 4 2 31 31 H 1.08997 * 109.46902 * 299.99608 * 5 4 2 32 32 H 1.09004 * 109.47158 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47301 * 59.99439 * 6 5 4 34 34 H 1.09003 * 109.47458 * 300.00014 * 7 6 5 35 35 H 1.09005 * 109.46907 * 180.02562 * 7 6 5 36 36 H 1.08991 * 109.46423 * 305.85615 * 11 10 8 37 37 H 1.09001 * 109.46301 * 65.83266 * 11 10 8 38 38 H 1.09005 * 109.50225 * 180.88490 * 12 11 10 39 39 H 1.08993 * 109.53788 * 60.78428 * 12 11 10 40 40 H 1.08997 * 109.52246 * 297.75322 * 13 12 11 41 41 H 0.97005 * 120.00023 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.50171 * 182.40246 * 22 13 12 43 43 H 1.08996 * 109.53771 * 62.30463 * 22 13 12 44 44 H 1.08998 * 109.46087 * 294.18144 * 23 10 8 45 45 H 1.09007 * 109.45670 * 54.14359 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0399 -0.7212 1.2493 9 1 1.6767 -1.7489 1.2493 10 7 1.5503 -0.0287 2.4487 11 6 1.6321 -0.8987 3.6289 12 6 0.9819 -0.2000 4.8253 13 6 1.7049 1.1232 5.0922 14 6 1.0315 1.8441 6.2314 15 1 0.6042 2.8234 6.0734 16 6 0.9607 1.2535 7.4752 17 7 1.4805 0.0609 7.6674 18 14 0.1253 2.1469 8.8872 19 1 -1.2926 2.4126 8.5350 20 1 0.1830 1.3048 10.1090 21 1 0.8220 3.4337 9.1401 22 6 1.6467 1.9907 3.8319 23 6 2.2777 1.2286 2.6644 24 1 -0.3633 -1.0235 0.0923 25 1 -0.3634 0.5917 0.8402 26 1 -0.3633 0.4317 -0.9326 27 1 1.7209 1.8654 -0.7650 28 1 1.6767 -1.7489 -1.2491 29 1 1.6767 -0.2074 -2.1392 30 1 3.9334 -1.2342 -2.1396 31 1 3.9329 0.3071 -1.2497 32 1 5.1706 -1.4415 -0.0006 33 1 3.7175 -2.4693 0.0001 34 1 3.9334 0.3075 1.2488 35 1 3.9345 -1.2336 2.1390 36 1 1.1106 -1.8342 3.4273 37 1 2.6779 -1.1072 3.8546 38 1 1.0568 -0.8394 5.7049 39 1 -0.0676 -0.0035 4.6064 40 1 2.7452 0.9243 5.3499 41 1 1.4310 -0.3545 8.5427 42 1 2.1965 2.9165 4.0017 43 1 0.6080 2.2223 3.5964 44 1 3.3205 1.0100 2.8944 45 1 2.2250 1.8380 1.7621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699413775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:08 Heat of formation + Delta-G solvation = -68.201681 kcal Electronic energy + Delta-G solvation = -22411.021573 eV Core-core repulsion = 19427.193541 eV Total energy + Delta-G solvation = -2983.828032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09882 -37.25678 -35.05195 -33.62913 -31.50039 -31.13615 -29.70350 -28.65160 -26.31826 -25.02391 -22.87653 -22.07659 -21.28223 -20.86357 -19.43554 -18.13983 -16.52929 -16.10136 -15.69403 -14.96589 -14.62090 -14.40818 -14.15384 -13.70597 -13.61995 -13.04782 -12.94585 -12.58562 -12.42587 -12.14875 -12.08848 -11.77066 -11.71601 -11.34928 -11.04710 -10.94618 -10.90387 -10.81651 -10.66124 -10.51011 -10.42971 -10.00836 -9.94098 -9.76353 -9.58879 -9.30273 -8.64715 -8.59703 -8.19591 -7.47500 -5.89059 -3.94027 3.37601 3.41666 3.44870 4.32711 4.44344 4.51976 4.69786 4.85261 5.03580 5.15424 5.21569 5.40637 5.44364 5.47512 5.52469 5.70128 5.71844 5.89285 5.91095 5.95439 6.01656 6.10045 6.14388 6.16649 6.21992 6.25893 6.39129 6.46253 6.57949 6.59159 6.69233 6.74815 6.90918 7.13925 7.24981 7.31443 7.57164 7.75887 7.83789 7.90331 7.99850 8.17590 8.27780 8.58986 9.09843 9.69780 11.16902 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037786 B = 0.004812 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.830015 B = 5817.712855 C = 6021.307901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 O -0.542 6.542 4 C -0.143 4.143 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.100 3.900 9 H 0.079 0.921 10 N -0.521 5.521 11 C 0.055 3.945 12 C -0.102 4.102 13 C 0.048 3.952 14 C -0.508 4.508 15 H 0.052 0.948 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.279 1.279 22 C -0.106 4.106 23 C 0.049 3.951 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.361 0.639 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.021 0.979 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.018 0.982 41 H 0.258 0.742 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.018 0.982 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -2.987 -18.116 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.103 3.897 3 O -0.348 6.348 4 C -0.182 4.182 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.188 4.188 8 C -0.009 4.009 9 H 0.097 0.903 10 N -0.244 5.244 11 C -0.072 4.072 12 C -0.140 4.140 13 C 0.029 3.971 14 C -0.546 4.546 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.144 4.144 23 C -0.078 4.078 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.208 0.792 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.712 -3.204 -17.450 17.824 hybrid contribution 0.149 0.227 0.475 0.547 sum 1.861 -2.977 -16.976 17.335 Atomic orbital electron populations 1.22320 0.95417 1.02663 1.01998 1.21156 0.92697 0.82283 0.93567 1.86652 1.77066 1.23104 1.47948 1.22240 0.96541 1.01376 0.98016 1.21441 0.95147 1.01210 0.97345 1.21478 0.99943 0.98967 0.94888 1.22202 0.97440 1.01882 0.97322 1.21644 0.92438 0.96569 0.90248 0.90288 1.62147 1.54977 1.05077 1.02168 1.22287 0.98391 0.95053 0.91511 1.21626 0.98056 0.99537 0.94777 1.18674 0.95806 0.91659 0.90916 1.21213 1.36373 1.02761 0.94299 0.92927 1.24964 0.95583 0.94949 0.98522 1.69876 1.45862 1.14728 1.22825 0.86719 0.80131 0.79651 0.81829 1.20361 1.21433 1.20428 1.21672 0.99525 0.97784 0.95389 1.22506 0.94145 0.90969 1.00133 0.92406 0.90059 0.93714 0.79213 0.91396 0.91963 0.92670 0.91411 0.92431 0.92528 0.90404 0.92291 0.93177 0.96124 0.89232 0.94039 0.96421 0.93171 0.93732 0.92947 0.96383 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 8.58 37.16 0.32 -1.69 16 2 C 0.14 1.74 0.74 -90.62 -0.07 1.67 16 3 O -0.54 -6.72 8.32 -35.23 -0.29 -7.01 16 4 C -0.14 -1.41 4.92 -26.73 -0.13 -1.54 16 5 C -0.11 -1.14 5.78 -26.73 -0.15 -1.30 16 6 C -0.11 -1.30 5.92 -26.74 -0.16 -1.46 16 7 C -0.15 -2.12 4.13 -26.71 -0.11 -2.23 16 8 C 0.10 1.47 1.58 -67.69 -0.11 1.36 16 9 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 10 N -0.52 -9.38 3.88 -226.66 -0.88 -10.26 16 11 C 0.05 1.11 5.24 -3.83 -0.02 1.09 16 12 C -0.10 -2.47 5.12 -26.65 -0.14 -2.61 16 13 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 14 C -0.51 -14.39 8.56 -34.44 -0.29 -14.69 16 15 H 0.05 1.48 7.75 -52.48 -0.41 1.07 16 16 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 17 N -0.89 -26.05 11.37 55.43 0.63 -25.42 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.11 -2.35 5.32 -26.65 -0.14 -2.49 16 23 C 0.05 0.94 4.18 -3.84 -0.02 0.93 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.20 7.77 -51.93 -0.40 0.80 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.36 3.14 9.05 45.56 0.41 3.55 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.21 6.00 -51.93 -0.31 0.90 16 35 H 0.06 0.91 7.19 -51.93 -0.37 0.54 16 36 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 37 H 0.02 0.43 7.23 -51.93 -0.38 0.06 16 38 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 39 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.36 6.60 -51.93 -0.34 0.02 16 45 H 0.10 1.73 4.85 -51.93 -0.25 1.48 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -29.27 325.88 -9.34 -38.61 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.38 Total: 2.72 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.31 Total: -20.30 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.25 Total: -35.68 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.29 Total: -7.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.27 -9.34 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699413775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.595 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds