Wall clock time and date at job start Mon Mar 30 2020 07:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.46837 * 2 1 4 4 C 1.52995 * 109.47370 * 239.99737 * 2 1 3 5 5 C 1.53000 * 109.47022 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47048 * 60.00448 * 5 4 2 7 7 C 1.52995 * 109.46843 * 299.99661 * 6 5 4 8 8 C 1.52997 * 109.46763 * 119.99698 * 2 1 3 9 9 H 1.09001 * 109.47553 * 60.00831 * 8 2 1 10 10 N 1.46895 * 109.47475 * 299.99883 * 8 2 1 11 11 C 1.46853 * 110.99944 * 161.48244 * 10 8 2 12 12 C 1.53042 * 109.52054 * 185.84341 * 11 10 8 13 13 C 1.53124 * 109.27800 * 300.81992 * 12 11 10 14 14 C 1.50701 * 109.52063 * 177.56317 * 13 12 11 15 15 H 1.08006 * 119.99668 * 240.32018 * 14 13 12 16 16 C 1.37871 * 120.00096 * 60.31945 * 14 13 12 17 17 N 1.31515 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47196 * 59.99891 * 18 16 14 20 20 H 1.48498 * 109.46884 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46950 * 299.99791 * 18 16 14 22 22 C 1.53115 * 109.15737 * 57.65851 * 13 12 11 23 23 C 1.46846 * 111.00583 * 285.69380 * 10 8 2 24 24 H 1.08997 * 109.46884 * 185.15133 * 1 2 3 25 25 H 1.09000 * 109.47600 * 305.15448 * 1 2 3 26 26 H 1.09001 * 109.46950 * 65.15893 * 1 2 3 27 27 H 0.96702 * 114.00355 * 300.00071 * 3 2 1 28 28 H 1.08998 * 109.46990 * 300.00294 * 4 2 1 29 29 H 1.09005 * 109.46907 * 59.99893 * 4 2 1 30 30 H 1.09006 * 109.46752 * 180.02562 * 5 4 2 31 31 H 1.08997 * 109.46902 * 299.99608 * 5 4 2 32 32 H 1.09004 * 109.47158 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47301 * 59.99439 * 6 5 4 34 34 H 1.09003 * 109.47458 * 300.00014 * 7 6 5 35 35 H 1.09005 * 109.46907 * 180.02562 * 7 6 5 36 36 H 1.08991 * 109.46423 * 305.85615 * 11 10 8 37 37 H 1.09001 * 109.46301 * 65.83266 * 11 10 8 38 38 H 1.09005 * 109.50225 * 180.88490 * 12 11 10 39 39 H 1.08993 * 109.53788 * 60.78428 * 12 11 10 40 40 H 1.08997 * 109.52246 * 297.75322 * 13 12 11 41 41 H 0.97005 * 120.00023 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.50171 * 182.40246 * 22 13 12 43 43 H 1.08996 * 109.53771 * 62.30463 * 22 13 12 44 44 H 1.08998 * 109.46087 * 294.18144 * 23 10 8 45 45 H 1.09007 * 109.45670 * 54.14359 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0399 -0.7212 1.2493 9 1 1.6767 -1.7489 1.2493 10 7 1.5503 -0.0287 2.4487 11 6 1.6321 -0.8987 3.6289 12 6 0.9819 -0.2000 4.8253 13 6 1.7049 1.1232 5.0922 14 6 1.0315 1.8441 6.2314 15 1 0.6042 2.8234 6.0734 16 6 0.9607 1.2535 7.4752 17 7 1.4805 0.0609 7.6674 18 14 0.1253 2.1469 8.8872 19 1 -1.2926 2.4126 8.5350 20 1 0.1830 1.3048 10.1090 21 1 0.8220 3.4337 9.1401 22 6 1.6467 1.9907 3.8319 23 6 2.2777 1.2286 2.6644 24 1 -0.3633 -1.0235 0.0923 25 1 -0.3634 0.5917 0.8402 26 1 -0.3633 0.4317 -0.9326 27 1 1.7209 1.8654 -0.7650 28 1 1.6767 -1.7489 -1.2491 29 1 1.6767 -0.2074 -2.1392 30 1 3.9334 -1.2342 -2.1396 31 1 3.9329 0.3071 -1.2497 32 1 5.1706 -1.4415 -0.0006 33 1 3.7175 -2.4693 0.0001 34 1 3.9334 0.3075 1.2488 35 1 3.9345 -1.2336 2.1390 36 1 1.1106 -1.8342 3.4273 37 1 2.6779 -1.1072 3.8546 38 1 1.0568 -0.8394 5.7049 39 1 -0.0676 -0.0035 4.6064 40 1 2.7452 0.9243 5.3499 41 1 1.4310 -0.3545 8.5427 42 1 2.1965 2.9165 4.0017 43 1 0.6080 2.2223 3.5964 44 1 3.3205 1.0100 2.8944 45 1 2.2250 1.8380 1.7621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699413775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:08 Heat of formation + Delta-G solvation = -86.613502 kcal Electronic energy + Delta-G solvation = -22411.819969 eV Core-core repulsion = 19427.193541 eV Total energy + Delta-G solvation = -2984.626428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26023 -38.77495 -36.11724 -35.35014 -33.24333 -32.18138 -31.43424 -30.01206 -27.70905 -26.56265 -24.32423 -23.76460 -22.66057 -21.95039 -20.67183 -19.83594 -18.44965 -17.36500 -16.88008 -16.50859 -16.10005 -15.63424 -15.53065 -14.96836 -14.82038 -14.74540 -14.40894 -13.96987 -13.80947 -13.75594 -13.38265 -13.05305 -12.86519 -12.76082 -12.67891 -12.49532 -12.34900 -12.13808 -12.03921 -11.99191 -11.79202 -11.69603 -11.35727 -11.29594 -11.02889 -10.74402 -10.64293 -10.44074 -10.18831 -8.96768 -8.07101 -6.21221 1.40420 1.42383 1.49983 2.43897 3.09854 3.19146 3.42067 3.74706 3.92257 4.04382 4.19881 4.23183 4.34575 4.39895 4.44856 4.48136 4.56000 4.58392 4.66228 4.80448 4.86431 4.90601 4.93864 4.97634 5.04983 5.09023 5.10533 5.19893 5.23315 5.26593 5.28456 5.36200 5.41467 5.50798 5.57170 5.60019 5.63320 5.70962 6.02016 6.07800 6.40081 6.42685 6.45765 6.90231 7.11725 7.46359 8.97135 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037786 B = 0.004812 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.830015 B = 5817.712855 C = 6021.307901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 O -0.560 6.560 4 C -0.136 4.136 5 C -0.110 4.110 6 C -0.112 4.112 7 C -0.145 4.145 8 C 0.095 3.905 9 H 0.085 0.915 10 N -0.521 5.521 11 C 0.066 3.934 12 C -0.091 4.091 13 C 0.046 3.954 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.955 3.045 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.098 4.098 23 C 0.063 3.937 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.381 0.619 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.008 0.992 38 H 0.059 0.941 39 H 0.029 0.971 40 H -0.019 1.019 41 H 0.260 0.740 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.005 0.995 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -3.013 -20.464 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.108 3.892 3 O -0.369 6.369 4 C -0.174 4.174 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.184 4.184 8 C -0.014 4.014 9 H 0.103 0.897 10 N -0.244 5.244 11 C -0.062 4.062 12 C -0.130 4.130 13 C 0.027 3.973 14 C -0.573 4.573 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.136 4.136 23 C -0.064 4.064 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.231 0.769 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.048 0.952 40 H -0.001 1.001 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.023 0.977 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.187 -3.222 -19.828 20.123 hybrid contribution 0.334 0.240 1.204 1.272 sum 1.521 -2.982 -18.625 18.923 Atomic orbital electron populations 1.22270 0.95284 1.02448 1.02016 1.21068 0.92619 0.82356 0.93177 1.86524 1.77321 1.23498 1.49540 1.22185 0.96227 1.01708 0.97289 1.21425 0.95308 1.00881 0.97165 1.21471 1.00296 0.99177 0.94030 1.22111 0.97065 1.01059 0.98130 1.21841 0.92832 0.97023 0.89708 0.89704 1.62113 1.55260 1.04604 1.02392 1.22049 0.97299 0.95664 0.91155 1.21376 0.97457 0.98597 0.95536 1.18638 0.93414 0.93038 0.92183 1.21571 1.37006 1.02995 0.95691 0.93260 1.25760 0.96104 0.95693 1.01069 1.70024 1.46527 1.15920 1.23391 0.85671 0.79225 0.78566 0.78543 1.19601 1.20804 1.19751 1.21553 0.99491 0.97548 0.95045 1.22369 0.93018 0.91545 0.99459 0.92166 0.93149 0.91158 0.76942 0.90628 0.89606 0.90594 0.91996 0.91967 0.91664 0.91988 0.94549 0.91268 0.97390 0.92281 0.95168 1.00120 0.93104 0.93845 0.93424 0.97659 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.58 71.98 0.62 -2.89 16 2 C 0.15 3.20 0.74 -10.80 -0.01 3.19 16 3 O -0.56 -12.49 8.32 -148.98 -1.24 -13.73 16 4 C -0.14 -2.12 4.92 30.59 0.15 -1.97 16 5 C -0.11 -1.82 5.78 30.59 0.18 -1.65 16 6 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 7 C -0.14 -4.00 4.13 30.61 0.13 -3.88 16 8 C 0.09 2.64 1.58 44.93 0.07 2.72 16 9 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 10 N -0.52 -18.74 3.88 -871.01 -3.38 -22.12 16 11 C 0.07 2.74 5.24 86.33 0.45 3.19 16 12 C -0.09 -4.63 5.12 30.65 0.16 -4.47 16 13 C 0.05 2.47 2.16 -11.46 -0.02 2.45 16 14 C -0.53 -31.23 8.56 25.60 0.22 -31.01 16 15 H 0.05 2.83 7.75 -2.91 -0.02 2.81 16 16 C 0.01 0.69 5.31 84.65 0.45 1.14 16 17 N -0.92 -55.19 11.37 21.44 0.24 -54.95 16 18 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 C -0.10 -4.50 5.32 30.64 0.16 -4.33 16 23 C 0.06 2.44 4.18 86.32 0.36 2.80 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.41 7.77 -2.39 -0.02 1.39 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.38 5.36 9.05 -74.06 -0.67 4.69 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 1.12 7.68 -2.39 -0.02 1.10 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.91 6.00 -2.39 -0.01 1.89 16 35 H 0.04 1.14 7.19 -2.38 -0.02 1.13 16 36 H 0.07 2.58 7.94 -2.39 -0.02 2.56 16 37 H 0.01 0.35 7.23 -2.39 -0.02 0.33 16 38 H 0.06 3.34 6.17 -2.38 -0.01 3.33 16 39 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 40 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 41 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 42 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.01 0.22 6.60 -2.39 -0.02 0.20 16 45 H 0.12 4.08 4.85 -2.38 -0.01 4.06 16 Total: -1.00 -65.22 325.88 1.02 -64.20 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.28 Total: 16.14 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.09 Total: -36.80 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.13 Total: -77.07 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.24 Total: -13.73 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.22 1.02 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699413775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.416 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds