Wall clock time and date at job start Mon Mar 30 2020 07:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47200 * 2 1 4 4 C 1.53002 * 109.46993 * 240.00009 * 2 1 3 5 5 C 1.53007 * 109.47119 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46760 * 59.99881 * 5 4 2 7 7 C 1.52994 * 109.47456 * 300.00172 * 6 5 4 8 8 C 1.52993 * 109.47488 * 59.99850 * 7 6 5 9 9 H 1.08993 * 109.47388 * 179.97438 * 8 7 6 10 10 N 1.46511 * 109.47009 * 60.00165 * 8 7 6 11 11 C 1.36940 * 119.99608 * 358.14995 * 10 8 7 12 12 H 1.07996 * 119.99680 * 239.86934 * 11 10 8 13 13 C 1.38811 * 120.00133 * 59.87192 * 11 10 8 14 14 N 1.31623 * 119.99967 * 16.90024 * 13 11 10 15 15 Si 1.86797 * 119.99888 * 196.90147 * 13 11 10 16 16 H 1.48497 * 109.47313 * 90.00338 * 15 13 11 17 17 H 1.48502 * 109.46891 * 210.00245 * 15 13 11 18 18 H 1.48502 * 109.47265 * 329.99707 * 15 13 11 19 19 C 1.46493 * 119.99944 * 178.14831 * 10 8 7 20 20 C 1.54264 * 110.03273 * 235.54427 * 19 10 8 21 21 C 1.54963 * 104.16306 * 217.14070 * 20 19 10 22 22 C 1.54889 * 102.77736 * 37.88412 * 21 20 19 23 23 C 1.53878 * 110.03096 * 118.33035 * 19 10 8 24 24 H 1.09001 * 109.46939 * 285.11957 * 1 2 3 25 25 H 1.08996 * 109.47309 * 45.11967 * 1 2 3 26 26 H 1.09001 * 109.47409 * 165.12345 * 1 2 3 27 27 H 0.96706 * 113.99879 * 300.00039 * 3 2 1 28 28 H 1.08999 * 109.46962 * 299.99532 * 4 2 1 29 29 H 1.09000 * 109.47376 * 59.99875 * 4 2 1 30 30 H 1.09001 * 109.46955 * 179.97438 * 5 4 2 31 31 H 1.08993 * 109.46789 * 300.00107 * 5 4 2 32 32 H 1.09000 * 109.46737 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47337 * 60.00423 * 6 5 4 34 34 H 1.09007 * 109.46940 * 299.99881 * 7 6 5 35 35 H 1.09000 * 109.47430 * 180.02562 * 7 6 5 36 36 H 0.96994 * 119.99581 * 184.92832 * 14 13 11 37 37 H 1.09002 * 110.02182 * 356.93568 * 19 10 8 38 38 H 1.08999 * 110.48578 * 335.78797 * 20 19 10 39 39 H 1.09002 * 110.48905 * 98.42687 * 20 19 10 40 40 H 1.09008 * 110.71702 * 279.57113 * 21 20 19 41 41 H 1.08996 * 110.76954 * 156.22204 * 21 20 19 42 42 H 1.08997 * 110.48682 * 203.40498 * 22 21 20 43 43 H 1.08997 * 110.59715 * 80.82191 * 22 21 20 44 44 H 1.09001 * 110.02927 * 238.56747 * 23 19 10 45 45 H 1.08993 * 110.03059 * 359.94629 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4416 -0.0003 7 6 3.5705 -0.7204 1.2489 8 6 2.0405 -0.7209 1.2492 9 1 1.6772 -0.2075 2.1394 10 7 1.5526 -2.1023 1.2495 11 6 2.4423 -3.1426 1.2112 12 1 2.4116 -3.8495 0.3952 13 6 3.3834 -3.2886 2.2210 14 7 3.2258 -2.6555 3.3641 15 14 4.8737 -4.3837 1.9576 16 1 5.9820 -3.5811 1.3810 17 1 5.3026 -4.9572 3.2585 18 1 4.5211 -5.4835 1.0241 19 6 0.1130 -2.3707 1.2909 20 6 -0.2197 -3.2862 2.4871 21 6 -1.3391 -4.2155 1.9534 22 6 -0.8983 -4.4784 0.4920 23 6 -0.3186 -3.1281 0.0229 24 1 -0.3633 0.2681 0.9921 25 1 -0.3634 0.7251 -0.7281 26 1 -0.3634 -0.9932 -0.2638 27 1 1.7209 1.8653 -0.7651 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2075 -2.1393 30 1 3.9333 -1.2350 -2.1394 31 1 3.9329 0.3070 -1.2498 32 1 5.1704 -1.4416 -0.0008 33 1 3.7175 -2.4695 -0.0001 34 1 3.9335 0.3074 1.2487 35 1 3.9345 -1.2337 2.1389 36 1 3.9176 -2.7000 4.0425 37 1 -0.4389 -1.4343 1.3726 38 1 0.6547 -3.8695 2.7758 39 1 -0.5814 -2.6968 3.3296 40 1 -2.3049 -3.7108 1.9808 41 1 -1.3721 -5.1458 2.5203 42 1 -1.7553 -4.7591 -0.1202 43 1 -0.1342 -5.2549 0.4558 44 1 -1.0806 -2.5597 -0.5103 45 1 0.5429 -3.2952 -0.6236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699421959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:30 Heat of formation + Delta-G solvation = -23.845703 kcal Electronic energy + Delta-G solvation = -23745.252702 eV Core-core repulsion = 20763.348090 eV Total energy + Delta-G solvation = -2981.904612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.51310 -37.02777 -35.11150 -32.80510 -31.88311 -29.99937 -28.80809 -27.76502 -26.66413 -25.58434 -23.35201 -21.20287 -20.39022 -19.87977 -18.96369 -18.60236 -16.19448 -15.53624 -15.36150 -14.92821 -14.54514 -14.32250 -13.68958 -13.47611 -13.25715 -12.85134 -12.55655 -12.39476 -11.95494 -11.72914 -11.59692 -11.12992 -11.06629 -10.95127 -10.78755 -10.57735 -10.47579 -10.35467 -10.21987 -10.17058 -10.04521 -9.83367 -9.77870 -9.67999 -9.28984 -9.16867 -9.03466 -8.74007 -7.84298 -6.30354 -5.66727 -3.60110 3.32198 3.39517 3.42833 4.39989 4.83961 5.27943 5.44772 5.49638 5.54241 5.56650 5.62513 5.74334 5.84781 5.92463 6.15106 6.17550 6.23056 6.32900 6.41721 6.48298 6.51845 6.53690 6.59950 6.63750 6.66201 6.68418 6.69599 6.77422 6.84400 6.87568 6.94532 7.03778 7.07338 7.17520 7.32072 7.37458 7.53799 7.62853 7.78212 7.90159 7.98384 8.34769 8.67487 9.26916 9.73055 10.50073 11.12759 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.013413 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.816356 B = 2086.984957 C = 3374.822454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.109 3.891 3 O -0.561 6.561 4 C -0.127 4.127 5 C -0.107 4.107 6 C -0.136 4.136 7 C -0.113 4.113 8 C 0.217 3.783 9 H 0.028 0.972 10 N -0.564 5.564 11 C -0.252 4.252 12 H 0.051 0.949 13 C 0.045 3.955 14 N -0.862 5.862 15 Si 0.869 3.131 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.274 1.274 19 C 0.158 3.842 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.136 4.136 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.356 0.644 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.118 0.882 34 H 0.030 0.970 35 H 0.102 0.898 36 H 0.255 0.745 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 1.911 -6.287 8.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.066 3.934 3 O -0.365 6.365 4 C -0.164 4.164 5 C -0.144 4.144 6 C -0.173 4.173 7 C -0.150 4.150 8 C 0.111 3.889 9 H 0.046 0.954 10 N -0.286 5.286 11 C -0.381 4.381 12 H 0.068 0.932 13 C -0.158 4.158 14 N -0.501 5.501 15 Si 0.697 3.303 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.199 1.199 19 C 0.051 3.949 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.153 4.153 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.201 0.799 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.136 0.864 34 H 0.049 0.951 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.716 1.692 -5.505 7.444 hybrid contribution 0.559 -0.197 -0.676 0.899 sum -4.157 1.496 -6.182 7.598 Atomic orbital electron populations 1.23022 0.97729 1.02878 1.00823 1.22116 0.91358 0.81083 0.98800 1.86587 1.77371 1.24230 1.48266 1.22015 0.96679 1.01952 0.95790 1.21380 0.95213 0.99521 0.98305 1.22219 0.97098 1.04587 0.93350 1.21708 0.94948 0.97755 1.00616 1.19959 0.93805 0.84980 0.90196 0.95422 1.43623 0.99417 1.00021 1.85521 1.18278 1.11353 1.05743 1.02761 0.93214 1.25623 0.99991 0.95960 0.94194 1.70114 1.32212 1.43632 1.04129 0.86881 0.84668 0.81335 0.77465 1.20324 1.21672 1.19853 1.21438 0.86626 0.95512 0.91302 1.22728 0.97985 0.97886 0.97714 1.22467 0.98390 0.99216 0.96269 1.22217 0.98947 0.98233 0.95889 1.22707 0.99316 0.95626 0.99856 0.92605 0.94510 0.89477 0.79894 0.90055 0.94691 0.94227 0.93602 0.95639 0.86426 0.95117 0.88005 0.93448 0.92068 0.88975 0.94047 0.93195 0.93099 0.93766 0.91983 0.93895 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 7.13 37.15 0.27 -2.88 16 2 C 0.11 2.03 0.80 -90.62 -0.07 1.96 16 3 O -0.56 -10.21 11.63 -35.23 -0.41 -10.61 16 4 C -0.13 -2.27 4.71 -26.73 -0.13 -2.40 16 5 C -0.11 -2.00 5.78 -26.73 -0.15 -2.15 16 6 C -0.14 -2.92 4.80 -26.73 -0.13 -3.05 16 7 C -0.11 -2.60 4.71 -26.74 -0.13 -2.73 16 8 C 0.22 4.84 2.34 -67.93 -0.16 4.68 16 9 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 10 N -0.56 -12.42 1.50 -156.89 -0.23 -12.66 16 11 C -0.25 -6.00 3.89 -15.06 -0.06 -6.06 16 12 H 0.05 1.24 7.23 -52.49 -0.38 0.86 16 13 C 0.05 1.13 3.03 -17.43 -0.05 1.07 16 14 N -0.86 -22.80 11.66 55.49 0.65 -22.15 16 15 Si 0.87 20.00 28.45 -169.99 -4.84 15.16 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.16 3.13 2.32 -66.82 -0.16 2.97 16 20 C -0.12 -2.51 6.41 -25.03 -0.16 -2.67 16 21 C -0.13 -2.10 6.91 -24.70 -0.17 -2.27 16 22 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 23 C -0.14 -2.39 5.04 -25.61 -0.13 -2.52 16 24 H 0.06 0.98 7.09 -51.93 -0.37 0.61 16 25 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.09 1.45 3.37 -51.93 -0.18 1.28 16 27 H 0.36 4.95 9.03 45.56 0.41 5.36 16 28 H 0.08 1.56 6.00 -51.93 -0.31 1.25 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.85 7.68 -51.93 -0.40 0.45 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.12 2.70 3.62 -51.92 -0.19 2.52 16 34 H 0.03 0.71 7.68 -51.93 -0.40 0.31 16 35 H 0.10 2.61 4.43 -51.93 -0.23 2.38 16 36 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 37 H 0.06 1.19 4.57 -51.93 -0.24 0.95 16 38 H 0.09 2.19 6.90 -51.93 -0.36 1.84 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.04 0.68 6.90 -51.93 -0.36 0.32 16 45 H 0.07 1.33 5.76 -51.93 -0.30 1.03 16 LS Contribution 309.24 15.07 4.66 4.66 Total: -1.00 -25.42 309.24 -8.23 -33.65 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.65 Total: 10.07 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.40 Total: -18.12 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.41 Total: -34.81 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.41 Total: -10.61 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.84 Total: 15.16 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.42 -8.23 -33.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.802 kcal (2) G-P(sol) polarization free energy of solvation -25.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds