Wall clock time and date at job start Mon Mar 30 2020 07:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47200 * 2 1 4 4 C 1.53002 * 109.46993 * 240.00009 * 2 1 3 5 5 C 1.53007 * 109.47119 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46760 * 59.99881 * 5 4 2 7 7 C 1.52994 * 109.47456 * 300.00172 * 6 5 4 8 8 C 1.52993 * 109.47488 * 59.99850 * 7 6 5 9 9 H 1.08993 * 109.47388 * 179.97438 * 8 7 6 10 10 N 1.46511 * 109.47009 * 60.00165 * 8 7 6 11 11 C 1.36940 * 119.99608 * 358.14995 * 10 8 7 12 12 H 1.07996 * 119.99680 * 239.86934 * 11 10 8 13 13 C 1.38811 * 120.00133 * 59.87192 * 11 10 8 14 14 N 1.31623 * 119.99967 * 16.90024 * 13 11 10 15 15 Si 1.86797 * 119.99888 * 196.90147 * 13 11 10 16 16 H 1.48497 * 109.47313 * 90.00338 * 15 13 11 17 17 H 1.48502 * 109.46891 * 210.00245 * 15 13 11 18 18 H 1.48502 * 109.47265 * 329.99707 * 15 13 11 19 19 C 1.46493 * 119.99944 * 178.14831 * 10 8 7 20 20 C 1.54264 * 110.03273 * 235.54427 * 19 10 8 21 21 C 1.54963 * 104.16306 * 217.14070 * 20 19 10 22 22 C 1.54889 * 102.77736 * 37.88412 * 21 20 19 23 23 C 1.53878 * 110.03096 * 118.33035 * 19 10 8 24 24 H 1.09001 * 109.46939 * 285.11957 * 1 2 3 25 25 H 1.08996 * 109.47309 * 45.11967 * 1 2 3 26 26 H 1.09001 * 109.47409 * 165.12345 * 1 2 3 27 27 H 0.96706 * 113.99879 * 300.00039 * 3 2 1 28 28 H 1.08999 * 109.46962 * 299.99532 * 4 2 1 29 29 H 1.09000 * 109.47376 * 59.99875 * 4 2 1 30 30 H 1.09001 * 109.46955 * 179.97438 * 5 4 2 31 31 H 1.08993 * 109.46789 * 300.00107 * 5 4 2 32 32 H 1.09000 * 109.46737 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47337 * 60.00423 * 6 5 4 34 34 H 1.09007 * 109.46940 * 299.99881 * 7 6 5 35 35 H 1.09000 * 109.47430 * 180.02562 * 7 6 5 36 36 H 0.96994 * 119.99581 * 184.92832 * 14 13 11 37 37 H 1.09002 * 110.02182 * 356.93568 * 19 10 8 38 38 H 1.08999 * 110.48578 * 335.78797 * 20 19 10 39 39 H 1.09002 * 110.48905 * 98.42687 * 20 19 10 40 40 H 1.09008 * 110.71702 * 279.57113 * 21 20 19 41 41 H 1.08996 * 110.76954 * 156.22204 * 21 20 19 42 42 H 1.08997 * 110.48682 * 203.40498 * 22 21 20 43 43 H 1.08997 * 110.59715 * 80.82191 * 22 21 20 44 44 H 1.09001 * 110.02927 * 238.56747 * 23 19 10 45 45 H 1.08993 * 110.03059 * 359.94629 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4416 -0.0003 7 6 3.5705 -0.7204 1.2489 8 6 2.0405 -0.7209 1.2492 9 1 1.6772 -0.2075 2.1394 10 7 1.5526 -2.1023 1.2495 11 6 2.4423 -3.1426 1.2112 12 1 2.4116 -3.8495 0.3952 13 6 3.3834 -3.2886 2.2210 14 7 3.2258 -2.6555 3.3641 15 14 4.8737 -4.3837 1.9576 16 1 5.9820 -3.5811 1.3810 17 1 5.3026 -4.9572 3.2585 18 1 4.5211 -5.4835 1.0241 19 6 0.1130 -2.3707 1.2909 20 6 -0.2197 -3.2862 2.4871 21 6 -1.3391 -4.2155 1.9534 22 6 -0.8983 -4.4784 0.4920 23 6 -0.3186 -3.1281 0.0229 24 1 -0.3633 0.2681 0.9921 25 1 -0.3634 0.7251 -0.7281 26 1 -0.3634 -0.9932 -0.2638 27 1 1.7209 1.8653 -0.7651 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2075 -2.1393 30 1 3.9333 -1.2350 -2.1394 31 1 3.9329 0.3070 -1.2498 32 1 5.1704 -1.4416 -0.0008 33 1 3.7175 -2.4695 -0.0001 34 1 3.9335 0.3074 1.2487 35 1 3.9345 -1.2337 2.1389 36 1 3.9176 -2.7000 4.0425 37 1 -0.4389 -1.4343 1.3726 38 1 0.6547 -3.8695 2.7758 39 1 -0.5814 -2.6968 3.3296 40 1 -2.3049 -3.7108 1.9808 41 1 -1.3721 -5.1458 2.5203 42 1 -1.7553 -4.7591 -0.1202 43 1 -0.1342 -5.2549 0.4558 44 1 -1.0806 -2.5597 -0.5103 45 1 0.5429 -3.2952 -0.6236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699421959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:30 Heat of formation + Delta-G solvation = -38.135801 kcal Electronic energy + Delta-G solvation = -23745.872368 eV Core-core repulsion = 20763.348090 eV Total energy + Delta-G solvation = -2982.524278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11801 -38.52130 -36.72941 -34.46421 -33.53198 -31.64912 -30.44568 -29.24586 -28.23906 -27.26597 -25.01147 -22.84460 -21.99980 -21.29926 -20.59651 -20.24977 -17.98753 -17.02087 -16.97785 -16.46244 -16.25394 -16.01913 -15.19133 -15.11140 -14.77097 -14.50647 -14.09145 -13.89529 -13.59948 -13.37259 -13.17785 -12.88430 -12.65832 -12.58572 -12.37689 -12.24991 -12.08166 -12.04093 -11.86034 -11.64885 -11.50491 -11.47851 -11.31726 -11.14484 -11.00789 -10.81060 -10.67615 -10.28858 -9.73988 -8.21327 -7.50949 -5.53077 1.43454 1.50166 1.51490 2.51298 3.21506 3.49150 3.92253 4.04740 4.09068 4.14921 4.15503 4.24631 4.41993 4.52723 4.69811 4.70688 4.79364 4.86356 4.90292 4.95054 5.01876 5.05265 5.07702 5.12288 5.13982 5.18212 5.19621 5.29523 5.34189 5.38273 5.40840 5.44166 5.55862 5.65005 5.69974 5.75155 5.80680 5.84610 5.93450 6.07524 6.14781 6.71730 7.13337 7.39542 7.93747 8.63023 9.19375 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.013413 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.816356 B = 2086.984957 C = 3374.822454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.116 3.884 3 O -0.576 6.576 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.132 4.132 7 C -0.112 4.112 8 C 0.217 3.783 9 H -0.015 1.015 10 N -0.569 5.569 11 C -0.230 4.230 12 H 0.045 0.955 13 C 0.011 3.989 14 N -0.895 5.895 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.302 1.302 18 H -0.265 1.265 19 C 0.152 3.848 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.126 4.126 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.379 0.621 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.103 0.897 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 2.112 -9.139 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 O -0.383 6.383 4 C -0.158 4.158 5 C -0.141 4.141 6 C -0.168 4.168 7 C -0.150 4.150 8 C 0.111 3.889 9 H 0.003 0.997 10 N -0.292 5.292 11 C -0.360 4.360 12 H 0.062 0.938 13 C -0.188 4.188 14 N -0.536 5.536 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.229 1.229 18 H -0.190 1.190 19 C 0.046 3.954 20 C -0.166 4.166 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.165 4.165 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.227 0.773 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.121 0.879 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.545 1.890 -8.393 10.810 hybrid contribution 1.121 -0.192 0.251 1.165 sum -5.424 1.698 -8.142 9.930 Atomic orbital electron populations 1.22915 0.95865 1.04006 1.01033 1.21778 0.92644 0.81250 0.96973 1.86536 1.77735 1.24078 1.49944 1.21956 0.95803 1.01577 0.96470 1.21344 0.96026 0.99477 0.97211 1.22089 0.96747 1.03844 0.94162 1.21615 0.95935 0.96978 1.00424 1.19787 0.93088 0.85272 0.90775 0.99741 1.43676 1.00273 0.99532 1.85682 1.18255 1.10871 1.05340 1.01535 0.93776 1.25980 1.01751 0.96940 0.94130 1.70211 1.32572 1.45864 1.04989 0.86270 0.83022 0.80488 0.76754 1.20536 1.22909 1.18966 1.21628 0.85219 0.96081 0.92457 1.22647 0.97856 0.98215 0.97853 1.22411 0.97865 0.98710 0.96312 1.22200 0.99645 0.97133 0.95939 1.22574 0.99568 0.96180 0.98207 0.94010 0.91339 0.89188 0.77254 0.91114 0.91263 0.92274 0.93174 0.96167 0.87884 0.95936 0.90903 0.94351 0.91466 0.93130 0.95265 0.90823 0.92552 0.90559 0.93524 0.91164 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.53 7.13 71.98 0.51 -5.02 16 2 C 0.12 4.10 0.80 -10.79 -0.01 4.09 16 3 O -0.58 -19.67 11.63 -148.98 -1.73 -21.40 16 4 C -0.12 -3.92 4.71 30.60 0.14 -3.78 16 5 C -0.10 -3.60 5.78 30.60 0.18 -3.43 16 6 C -0.13 -5.62 4.80 30.59 0.15 -5.47 16 7 C -0.11 -5.29 4.71 30.59 0.14 -5.14 16 8 C 0.22 9.82 2.34 44.99 0.11 9.92 16 9 H -0.02 -0.80 8.14 -2.39 -0.02 -0.82 16 10 N -0.57 -25.30 1.50 -650.27 -0.97 -26.28 16 11 C -0.23 -11.12 3.89 84.03 0.33 -10.80 16 12 H 0.05 2.21 7.23 -2.91 -0.02 2.19 16 13 C 0.01 0.59 3.03 84.86 0.26 0.85 16 14 N -0.90 -49.85 11.66 21.65 0.25 -49.59 16 15 Si 0.91 42.11 28.45 68.60 1.95 44.06 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.15 5.90 2.32 45.72 0.11 6.01 16 20 C -0.13 -5.15 6.41 31.69 0.20 -4.95 16 21 C -0.12 -3.61 6.91 31.91 0.22 -3.39 16 22 C -0.11 -3.35 6.83 31.67 0.22 -3.14 16 23 C -0.13 -4.09 5.04 31.32 0.16 -3.94 16 24 H 0.04 1.38 7.09 -2.39 -0.02 1.37 16 25 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 26 H 0.09 2.68 3.37 -2.39 -0.01 2.67 16 27 H 0.38 9.09 9.03 -74.05 -0.67 8.42 16 28 H 0.07 2.50 6.00 -2.39 -0.01 2.48 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.72 7.68 -2.39 -0.02 1.70 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 4.72 3.62 -2.38 -0.01 4.71 16 34 H 0.02 1.06 7.68 -2.38 -0.02 1.04 16 35 H 0.07 3.92 4.43 -2.39 -0.01 3.91 16 36 H 0.25 13.66 8.32 -92.71 -0.77 12.89 16 37 H 0.07 2.54 4.57 -2.39 -0.01 2.53 16 38 H 0.05 2.48 6.90 -2.39 -0.02 2.47 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.92 6.90 -2.39 -0.02 1.90 16 45 H 0.06 2.00 5.76 -2.39 -0.01 1.99 16 Total: -1.00 -57.30 309.24 2.52 -54.78 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.31 Total: 26.61 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 2.71 Total: -28.17 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -0.72 Total: -75.87 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -1.73 Total: -21.40 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.95 Total: 44.06 kcal Total: -57.30 2.52 -54.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.639 kcal (2) G-P(sol) polarization free energy of solvation -57.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds