Wall clock time and date at job start Mon Mar 30 2020 07:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47604 * 2 1 4 4 C 1.52999 * 109.47410 * 239.99575 * 2 1 3 5 5 C 1.52994 * 109.47507 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47068 * 60.00354 * 5 4 2 7 7 C 1.53002 * 109.47117 * 299.99887 * 6 5 4 8 8 C 1.52998 * 109.46834 * 120.00132 * 2 1 3 9 9 H 1.09005 * 109.47631 * 59.99777 * 8 2 1 10 10 N 1.46500 * 109.47263 * 299.99917 * 8 2 1 11 11 C 1.36941 * 119.99953 * 301.77878 * 10 8 2 12 12 H 1.08002 * 119.99712 * 117.83087 * 11 10 8 13 13 C 1.38812 * 119.99767 * 297.83641 * 11 10 8 14 14 N 1.31626 * 119.99741 * 154.33998 * 13 11 10 15 15 Si 1.86792 * 120.00262 * 334.34363 * 13 11 10 16 16 H 1.48498 * 109.47474 * 96.57160 * 15 13 11 17 17 H 1.48505 * 109.47068 * 216.57147 * 15 13 11 18 18 H 1.48495 * 109.47087 * 336.56844 * 15 13 11 19 19 C 1.46501 * 120.00207 * 121.77969 * 10 8 2 20 20 C 1.54267 * 110.03034 * 237.16842 * 19 10 8 21 21 C 1.54896 * 104.19297 * 217.10543 * 20 19 10 22 22 C 1.54886 * 102.74901 * 37.94447 * 21 20 19 23 23 C 1.53875 * 110.03220 * 120.00362 * 19 10 8 24 24 H 1.09005 * 109.46754 * 59.99519 * 1 2 3 25 25 H 1.08997 * 109.47696 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47168 * 300.00619 * 1 2 3 27 27 H 0.96695 * 113.99649 * 299.04802 * 3 2 1 28 28 H 1.08997 * 109.47266 * 300.00967 * 4 2 1 29 29 H 1.09001 * 109.46564 * 60.00228 * 4 2 1 30 30 H 1.09006 * 109.47418 * 300.00443 * 5 4 2 31 31 H 1.09003 * 109.47518 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.47293 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47562 * 60.00147 * 6 5 4 34 34 H 1.08998 * 109.47544 * 300.00229 * 7 6 5 35 35 H 1.08996 * 109.47402 * 179.97438 * 7 6 5 36 36 H 0.96994 * 119.99737 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.01780 * 358.60659 * 19 10 8 38 38 H 1.09000 * 110.48965 * 335.78382 * 20 19 10 39 39 H 1.08996 * 110.48878 * 98.42995 * 20 19 10 40 40 H 1.09002 * 110.75407 * 279.62285 * 21 20 19 41 41 H 1.09006 * 110.75088 * 156.26080 * 21 20 19 42 42 H 1.09007 * 110.48087 * 203.37962 * 22 21 20 43 43 H 1.08997 * 110.48870 * 80.73707 * 22 21 20 44 44 H 1.09006 * 110.02637 * 238.56825 * 23 19 10 45 45 H 1.08999 * 110.03459 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 2.0399 -0.7213 1.2492 9 1 1.6765 -1.7490 1.2493 10 7 1.5516 -0.0307 2.4454 11 6 1.8521 1.2905 2.6439 12 1 1.0601 2.0232 2.6914 13 6 3.1747 1.6879 2.7840 14 7 3.5288 2.9173 2.4744 15 14 4.4520 0.4781 3.4118 16 1 5.1631 -0.1330 2.2603 17 1 5.4281 1.1918 4.2740 18 1 3.7805 -0.5860 4.2003 19 6 0.7417 -0.7535 3.4293 20 6 -0.6137 -0.0427 3.6226 21 6 -0.9105 -0.1956 5.1351 22 6 0.4890 -0.0263 5.7768 23 6 1.4428 -0.7430 4.7990 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.7332 1.8610 -0.7723 28 1 1.6766 -1.7489 -1.2492 29 1 1.6767 -0.2075 -2.1391 30 1 3.9338 0.3057 -1.2486 31 1 3.9334 -1.2354 -2.1390 32 1 5.1695 -1.4435 0.0008 33 1 3.7158 -2.4710 0.0002 34 1 3.9331 0.3053 1.2499 35 1 3.9320 -1.2365 2.1396 36 1 4.4529 3.1951 2.5727 37 1 0.5821 -1.7800 3.0993 38 1 -0.5338 1.0107 3.3541 39 1 -1.3882 -0.5305 3.0307 40 1 -1.3175 -1.1835 5.3509 41 1 -1.5892 0.5860 5.4765 42 1 0.5193 -0.5022 6.7570 43 1 0.7470 1.0298 5.8563 44 1 1.6227 -1.7646 5.1341 45 1 2.3858 -0.2005 4.7316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699421967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:33 Heat of formation + Delta-G solvation = -14.652865 kcal Electronic energy + Delta-G solvation = -23561.540373 eV Core-core repulsion = 20580.034392 eV Total energy + Delta-G solvation = -2981.505981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.21798 -37.28617 -34.32726 -33.62916 -31.41512 -30.44345 -29.03827 -27.86861 -26.55167 -25.59310 -23.61096 -21.39828 -20.73932 -19.95580 -18.96226 -18.73606 -16.66396 -15.66359 -15.16810 -14.70405 -14.62458 -14.48173 -13.97559 -13.45741 -13.28453 -12.83024 -12.58029 -12.45487 -12.28603 -11.90353 -11.67492 -11.38593 -11.22928 -11.03813 -10.81576 -10.76762 -10.56819 -10.49758 -10.31448 -10.14978 -10.01927 -9.90014 -9.72589 -9.56199 -9.41173 -8.91669 -8.73721 -8.53474 -8.02356 -6.13841 -5.73384 -3.37899 3.45411 3.62816 3.67737 4.71065 4.93611 5.17194 5.29899 5.44596 5.46408 5.51127 5.53339 5.58334 5.74410 5.82692 5.86685 6.01763 6.10624 6.15309 6.16339 6.21391 6.26652 6.31243 6.33422 6.36001 6.46250 6.48373 6.53746 6.57175 6.61841 6.66458 6.73110 6.77785 6.84965 6.88237 7.05556 7.07973 7.11693 7.26731 7.34400 7.43482 8.34608 8.84578 8.91059 9.30520 9.94439 10.47034 11.35225 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.010689 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.076478 B = 2618.900235 C = 3224.635683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 O -0.491 6.491 4 C -0.145 4.145 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.153 4.153 8 C 0.196 3.804 9 H 0.049 0.951 10 N -0.588 5.588 11 C -0.241 4.241 12 H 0.060 0.940 13 C 0.071 3.929 14 N -0.880 5.880 15 Si 0.847 3.153 16 H -0.272 1.272 17 H -0.324 1.324 18 H -0.253 1.253 19 C 0.169 3.831 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.150 4.150 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.337 0.663 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.255 0.745 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 -8.190 -3.624 10.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.084 3.916 3 O -0.292 6.292 4 C -0.183 4.183 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.191 4.191 8 C 0.089 3.911 9 H 0.067 0.933 10 N -0.308 5.308 11 C -0.370 4.370 12 H 0.077 0.923 13 C -0.132 4.132 14 N -0.518 5.518 15 Si 0.680 3.320 16 H -0.199 1.199 17 H -0.255 1.255 18 H -0.180 1.180 19 C 0.063 3.937 20 C -0.169 4.169 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.188 4.188 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.180 0.820 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.194 -8.250 -3.068 9.750 hybrid contribution 0.620 -0.565 -0.207 0.864 sum -3.574 -8.815 -3.275 10.060 Atomic orbital electron populations 1.22344 0.97234 1.00519 1.01978 1.21518 0.91567 0.84714 0.93796 1.87327 1.76016 1.20878 1.44936 1.22307 0.96383 1.00693 0.98917 1.21395 0.95434 1.01329 0.96647 1.21438 0.99459 0.98396 0.95680 1.22884 0.98033 1.02744 0.95441 1.20501 0.91968 0.92546 0.86071 0.93267 1.44139 1.60126 1.09054 1.17523 1.17961 0.90987 0.81282 1.46778 0.92302 1.25882 0.97476 0.94305 0.95523 1.69992 1.17006 1.18844 1.45977 0.88468 0.82516 0.82392 0.78667 1.19903 1.25460 1.17956 1.21167 0.90284 0.92963 0.89294 1.22756 0.97283 1.02840 0.94003 1.22417 0.96856 0.99673 0.97052 1.22233 0.95117 1.00941 0.97065 1.23001 1.01384 0.98452 0.96007 0.94397 0.93883 0.90431 0.82004 0.92431 0.92783 0.91204 0.93449 0.93161 0.93273 0.88007 0.93456 0.93499 0.93954 0.90066 0.93818 0.92967 0.92875 0.93672 0.91597 0.94440 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.66 37.16 0.32 -2.45 16 2 C 0.13 2.35 0.67 -90.62 -0.06 2.29 16 3 O -0.49 -10.49 9.28 -35.23 -0.33 -10.82 16 4 C -0.14 -2.26 4.91 -26.73 -0.13 -2.39 16 5 C -0.11 -1.80 5.78 -26.74 -0.15 -1.95 16 6 C -0.11 -1.98 5.92 -26.73 -0.16 -2.14 16 7 C -0.15 -3.28 2.09 -26.75 -0.06 -3.33 16 8 C 0.20 3.99 2.01 -67.95 -0.14 3.86 16 9 H 0.05 0.94 7.57 -51.93 -0.39 0.55 16 10 N -0.59 -12.97 0.95 -156.91 -0.15 -13.12 16 11 C -0.24 -6.24 6.06 -15.06 -0.09 -6.33 16 12 H 0.06 1.74 7.08 -52.49 -0.37 1.37 16 13 C 0.07 1.94 4.10 -17.43 -0.07 1.87 16 14 N -0.88 -26.03 13.97 55.49 0.78 -25.26 16 15 Si 0.85 21.40 21.48 -169.99 -3.65 17.74 16 16 H -0.27 -6.68 4.97 56.52 0.28 -6.40 16 17 H -0.32 -8.74 7.11 56.52 0.40 -8.34 16 18 H -0.25 -6.13 4.85 56.52 0.27 -5.85 16 19 C 0.17 3.36 3.44 -66.81 -0.23 3.13 16 20 C -0.13 -2.37 5.97 -25.07 -0.15 -2.52 16 21 C -0.12 -1.98 6.91 -24.74 -0.17 -2.15 16 22 C -0.12 -2.07 6.83 -25.08 -0.17 -2.24 16 23 C -0.15 -3.01 5.91 -25.61 -0.15 -3.16 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 27 H 0.34 6.08 9.04 45.56 0.41 6.49 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.54 3.77 -51.93 -0.20 2.34 16 35 H 0.05 1.06 4.93 -51.93 -0.26 0.80 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 37 H 0.04 0.79 7.58 -51.93 -0.39 0.40 16 38 H 0.08 1.70 6.44 -51.93 -0.33 1.37 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 2.14 3.20 -51.93 -0.17 1.97 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -28.51 310.48 -7.43 -35.94 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.35 Total: 8.36 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.41 Total: -17.53 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.63 Total: -38.38 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.33 Total: -10.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -3.65 Total: 17.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.51 -7.43 -35.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.287 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds