Wall clock time and date at job start Mon Mar 30 2020 07:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47604 * 2 1 4 4 C 1.52999 * 109.47410 * 239.99575 * 2 1 3 5 5 C 1.52994 * 109.47507 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47068 * 60.00354 * 5 4 2 7 7 C 1.53002 * 109.47117 * 299.99887 * 6 5 4 8 8 C 1.52998 * 109.46834 * 120.00132 * 2 1 3 9 9 H 1.09005 * 109.47631 * 59.99777 * 8 2 1 10 10 N 1.46500 * 109.47263 * 299.99917 * 8 2 1 11 11 C 1.36941 * 119.99953 * 301.77878 * 10 8 2 12 12 H 1.08002 * 119.99712 * 117.83087 * 11 10 8 13 13 C 1.38812 * 119.99767 * 297.83641 * 11 10 8 14 14 N 1.31626 * 119.99741 * 154.33998 * 13 11 10 15 15 Si 1.86792 * 120.00262 * 334.34363 * 13 11 10 16 16 H 1.48498 * 109.47474 * 96.57160 * 15 13 11 17 17 H 1.48505 * 109.47068 * 216.57147 * 15 13 11 18 18 H 1.48495 * 109.47087 * 336.56844 * 15 13 11 19 19 C 1.46501 * 120.00207 * 121.77969 * 10 8 2 20 20 C 1.54267 * 110.03034 * 237.16842 * 19 10 8 21 21 C 1.54896 * 104.19297 * 217.10543 * 20 19 10 22 22 C 1.54886 * 102.74901 * 37.94447 * 21 20 19 23 23 C 1.53875 * 110.03220 * 120.00362 * 19 10 8 24 24 H 1.09005 * 109.46754 * 59.99519 * 1 2 3 25 25 H 1.08997 * 109.47696 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47168 * 300.00619 * 1 2 3 27 27 H 0.96695 * 113.99649 * 299.04802 * 3 2 1 28 28 H 1.08997 * 109.47266 * 300.00967 * 4 2 1 29 29 H 1.09001 * 109.46564 * 60.00228 * 4 2 1 30 30 H 1.09006 * 109.47418 * 300.00443 * 5 4 2 31 31 H 1.09003 * 109.47518 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.47293 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47562 * 60.00147 * 6 5 4 34 34 H 1.08998 * 109.47544 * 300.00229 * 7 6 5 35 35 H 1.08996 * 109.47402 * 179.97438 * 7 6 5 36 36 H 0.96994 * 119.99737 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.01780 * 358.60659 * 19 10 8 38 38 H 1.09000 * 110.48965 * 335.78382 * 20 19 10 39 39 H 1.08996 * 110.48878 * 98.42995 * 20 19 10 40 40 H 1.09002 * 110.75407 * 279.62285 * 21 20 19 41 41 H 1.09006 * 110.75088 * 156.26080 * 21 20 19 42 42 H 1.09007 * 110.48087 * 203.37962 * 22 21 20 43 43 H 1.08997 * 110.48870 * 80.73707 * 22 21 20 44 44 H 1.09006 * 110.02637 * 238.56825 * 23 19 10 45 45 H 1.08999 * 110.03459 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 2.0399 -0.7213 1.2492 9 1 1.6765 -1.7490 1.2493 10 7 1.5516 -0.0307 2.4454 11 6 1.8521 1.2905 2.6439 12 1 1.0601 2.0232 2.6914 13 6 3.1747 1.6879 2.7840 14 7 3.5288 2.9173 2.4744 15 14 4.4520 0.4781 3.4118 16 1 5.1631 -0.1330 2.2603 17 1 5.4281 1.1918 4.2740 18 1 3.7805 -0.5860 4.2003 19 6 0.7417 -0.7535 3.4293 20 6 -0.6137 -0.0427 3.6226 21 6 -0.9105 -0.1956 5.1351 22 6 0.4890 -0.0263 5.7768 23 6 1.4428 -0.7430 4.7990 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.7332 1.8610 -0.7723 28 1 1.6766 -1.7489 -1.2492 29 1 1.6767 -0.2075 -2.1391 30 1 3.9338 0.3057 -1.2486 31 1 3.9334 -1.2354 -2.1390 32 1 5.1695 -1.4435 0.0008 33 1 3.7158 -2.4710 0.0002 34 1 3.9331 0.3053 1.2499 35 1 3.9320 -1.2365 2.1396 36 1 4.4529 3.1951 2.5727 37 1 0.5821 -1.7800 3.0993 38 1 -0.5338 1.0107 3.3541 39 1 -1.3882 -0.5305 3.0307 40 1 -1.3175 -1.1835 5.3509 41 1 -1.5892 0.5860 5.4765 42 1 0.5193 -0.5022 6.7570 43 1 0.7470 1.0298 5.8563 44 1 1.6227 -1.7646 5.1341 45 1 2.3858 -0.2005 4.7316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699421967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:32 Heat of formation + Delta-G solvation = -33.029841 kcal Electronic energy + Delta-G solvation = -23562.337258 eV Core-core repulsion = 20580.034392 eV Total energy + Delta-G solvation = -2982.302867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75874 -38.79513 -35.93543 -35.25512 -33.37418 -31.96105 -30.53869 -29.36981 -28.17354 -27.15440 -25.33238 -22.95994 -22.17161 -21.39460 -20.64395 -20.31502 -18.55382 -17.22870 -16.70737 -16.36262 -16.25557 -15.98576 -15.69747 -15.04686 -14.84019 -14.39580 -14.12067 -14.07336 -13.78117 -13.55250 -13.29004 -13.03628 -12.76757 -12.56436 -12.40636 -12.27443 -12.07457 -11.95006 -11.86498 -11.69931 -11.48654 -11.38600 -11.34131 -11.17547 -11.02581 -10.66897 -10.45072 -10.18660 -10.05757 -8.08010 -7.78906 -5.49546 1.39636 1.53677 1.60048 2.61801 3.25884 3.44170 3.83116 3.93622 4.01627 4.06550 4.13059 4.17414 4.32594 4.41477 4.42403 4.60777 4.67650 4.73425 4.75196 4.80517 4.86717 4.94135 4.96780 4.98290 5.02088 5.03830 5.07356 5.15232 5.22066 5.26198 5.29633 5.32827 5.37560 5.44934 5.57404 5.61049 5.66683 5.71516 5.76098 5.78882 6.22620 6.68034 7.39899 7.51517 7.90350 8.45903 9.24079 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.010689 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.076478 B = 2618.900235 C = 3224.635683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 O -0.528 6.528 4 C -0.135 4.135 5 C -0.108 4.108 6 C -0.110 4.110 7 C -0.154 4.154 8 C 0.188 3.812 9 H 0.075 0.925 10 N -0.594 5.594 11 C -0.198 4.198 12 H 0.012 0.988 13 C 0.028 3.972 14 N -0.930 5.930 15 Si 0.894 3.106 16 H -0.263 1.263 17 H -0.354 1.354 18 H -0.234 1.234 19 C 0.162 3.838 20 C -0.124 4.124 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.155 4.155 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.348 0.652 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.058 0.942 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 -11.888 -4.550 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.078 3.922 3 O -0.330 6.330 4 C -0.173 4.173 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.193 4.193 8 C 0.081 3.919 9 H 0.093 0.907 10 N -0.315 5.315 11 C -0.328 4.328 12 H 0.029 0.971 13 C -0.170 4.170 14 N -0.572 5.572 15 Si 0.728 3.272 16 H -0.189 1.189 17 H -0.288 1.288 18 H -0.159 1.159 19 C 0.056 3.944 20 C -0.163 4.163 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.194 4.194 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.192 0.808 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.850 -12.001 -4.002 13.938 hybrid contribution 1.025 0.584 0.067 1.182 sum -4.824 -11.417 -3.935 13.004 Atomic orbital electron populations 1.22221 0.96026 1.01662 1.01262 1.21623 0.92444 0.83619 0.94478 1.87274 1.76763 1.22842 1.46120 1.22207 0.95618 1.01716 0.97763 1.21369 0.96066 0.99902 0.97174 1.21451 0.99457 0.99515 0.94369 1.22743 0.98915 1.00641 0.96982 1.20701 0.91316 0.93789 0.86050 0.90670 1.44200 1.60368 1.07835 1.19084 1.17463 0.89170 0.82403 1.43770 0.97064 1.26259 0.99090 0.95058 0.96567 1.70122 1.16677 1.20974 1.49464 0.87782 0.80472 0.81036 0.77921 1.18933 1.28761 1.15895 1.21377 0.90343 0.94025 0.88635 1.22635 0.97177 1.00407 0.96103 1.22388 0.95937 1.01699 0.94882 1.22213 0.95763 0.99215 0.98171 1.22996 1.00107 0.99329 0.96965 0.92757 0.91645 0.93587 0.80774 0.90037 0.90916 0.94000 0.90339 0.93362 0.90432 0.92083 0.94739 0.94449 0.91447 0.93906 0.91736 0.89975 0.91953 0.91074 0.94440 0.92317 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 8.66 71.98 0.62 -4.23 16 2 C 0.12 4.22 0.67 -10.80 -0.01 4.21 16 3 O -0.53 -22.87 9.28 -148.98 -1.38 -24.25 16 4 C -0.13 -3.68 4.91 30.59 0.15 -3.53 16 5 C -0.11 -3.19 5.78 30.59 0.18 -3.01 16 6 C -0.11 -3.59 5.92 30.59 0.18 -3.41 16 7 C -0.15 -6.43 2.09 30.58 0.06 -6.37 16 8 C 0.19 7.26 2.01 44.98 0.09 7.35 16 9 H 0.08 2.55 7.57 -2.38 -0.02 2.53 16 10 N -0.59 -25.90 0.95 -650.33 -0.62 -26.52 16 11 C -0.20 -10.63 6.06 84.03 0.51 -10.12 16 12 H 0.01 0.75 7.08 -2.91 -0.02 0.73 16 13 C 0.03 1.60 4.10 84.86 0.35 1.95 16 14 N -0.93 -58.54 13.97 21.65 0.30 -58.24 16 15 Si 0.89 46.14 21.48 68.60 1.47 47.61 16 16 H -0.26 -13.02 4.97 99.48 0.49 -12.52 16 17 H -0.35 -19.87 7.11 99.48 0.71 -19.16 16 18 H -0.23 -11.19 4.85 99.48 0.48 -10.70 16 19 C 0.16 6.09 3.44 45.72 0.16 6.25 16 20 C -0.12 -4.34 5.97 31.67 0.19 -4.15 16 21 C -0.11 -3.30 6.91 31.89 0.22 -3.08 16 22 C -0.12 -3.96 6.83 31.67 0.22 -3.75 16 23 C -0.16 -5.96 5.91 31.32 0.19 -5.78 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.74 7.16 -2.39 -0.02 1.72 16 27 H 0.35 12.79 9.04 -74.06 -0.67 12.12 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.47 7.68 -2.38 -0.02 1.45 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 3.08 3.77 -2.39 -0.01 3.07 16 35 H 0.03 1.49 4.93 -2.39 -0.01 1.48 16 36 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 38 H 0.04 1.83 6.44 -2.39 -0.02 1.81 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 1.98 8.14 -2.38 -0.02 1.97 16 45 H 0.06 2.59 3.20 -2.39 -0.01 2.58 16 Total: -1.00 -66.60 310.48 2.74 -63.86 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.15 Total: 25.20 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 3.10 Total: -27.66 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -0.31 Total: -84.76 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -1.38 Total: -24.25 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.47 Total: 47.61 kcal Total: -66.60 2.74 -63.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.830 kcal (2) G-P(sol) polarization free energy of solvation -66.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds