Wall clock time and date at job start Mon Mar 30 2020 07:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47371 * 2 1 4 4 C 1.52997 * 109.46610 * 120.00044 * 2 1 3 5 5 C 1.53000 * 109.46876 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47499 * 300.00012 * 5 4 2 7 7 C 1.53005 * 109.47137 * 59.99871 * 6 5 4 8 8 C 1.53002 * 109.46765 * 300.00145 * 7 6 5 9 9 H 1.08997 * 109.47207 * 299.99778 * 8 7 6 10 10 N 1.46503 * 109.46751 * 179.97438 * 8 7 6 11 11 C 1.36932 * 120.00288 * 299.16949 * 10 8 7 12 12 H 1.07999 * 120.00202 * 239.32545 * 11 10 8 13 13 C 1.38816 * 119.99847 * 59.60394 * 11 10 8 14 14 N 1.31619 * 120.00023 * 32.98620 * 13 11 10 15 15 Si 1.86803 * 119.99858 * 212.98492 * 13 11 10 16 16 H 1.48502 * 109.47050 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47077 * 119.99866 * 15 13 11 18 18 H 1.48499 * 109.47208 * 240.00062 * 15 13 11 19 19 C 1.46504 * 119.99700 * 119.16972 * 10 8 7 20 20 C 1.54266 * 110.03046 * 241.05606 * 19 10 8 21 21 C 1.54885 * 104.19599 * 217.10490 * 20 19 10 22 22 C 1.54891 * 102.74973 * 37.94392 * 21 20 19 23 23 C 1.53875 * 110.03359 * 123.88954 * 19 10 8 24 24 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47266 * 300.00496 * 1 2 3 26 26 H 1.09005 * 109.46628 * 60.00178 * 1 2 3 27 27 H 0.96699 * 114.00241 * 59.99894 * 3 2 1 28 28 H 1.08995 * 109.47703 * 299.99531 * 4 2 1 29 29 H 1.09006 * 109.47467 * 60.00091 * 4 2 1 30 30 H 1.08999 * 109.47580 * 60.00178 * 5 4 2 31 31 H 1.09004 * 109.47322 * 180.02562 * 5 4 2 32 32 H 1.08999 * 109.47688 * 179.97438 * 6 5 4 33 33 H 1.09009 * 109.47235 * 300.00254 * 6 5 4 34 34 H 1.09001 * 109.46936 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47077 * 60.00003 * 7 6 5 36 36 H 0.96999 * 119.99648 * 184.59230 * 14 13 11 37 37 H 1.09005 * 110.01680 * 2.49891 * 19 10 8 38 38 H 1.09000 * 110.49118 * 335.78450 * 20 19 10 39 39 H 1.09005 * 110.48332 * 98.43099 * 20 19 10 40 40 H 1.09003 * 110.75771 * 279.62628 * 21 20 19 41 41 H 1.09002 * 110.75609 * 156.26153 * 21 20 19 42 42 H 1.08999 * 110.48359 * 203.38161 * 22 21 20 43 43 H 1.08998 * 110.59596 * 80.79194 * 22 21 20 44 44 H 1.08996 * 110.03391 * 238.56756 * 23 19 10 45 45 H 1.09001 * 110.03194 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7219 1.2490 6 6 4.0795 -1.4435 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 6 2.0395 -0.7217 -1.2492 9 1 1.6759 -1.7492 -1.2490 10 7 1.5513 -0.0306 -2.4452 11 6 1.8684 1.2852 -2.6530 12 1 1.0839 2.0219 -2.7440 13 6 3.1981 1.6713 -2.7526 14 7 4.0823 0.8548 -3.2852 15 14 3.7323 3.3498 -2.1307 16 1 2.5564 4.0715 -1.5814 17 1 4.7523 3.1811 -1.0648 18 1 4.3127 4.1315 -3.2520 19 6 0.7237 -0.7472 -3.4187 20 6 1.4279 -0.7765 -4.7909 21 6 0.2746 -0.6220 -5.8132 22 6 -0.6683 0.3889 -5.1145 23 6 -0.6091 -0.0063 -3.6244 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.7211 1.8653 0.7650 28 1 1.6766 -0.2075 2.1392 29 1 1.6765 -1.7490 1.2493 30 1 3.9337 0.3056 1.2488 31 1 3.9332 -1.2361 2.1388 32 1 5.1695 -1.4435 -0.0006 33 1 3.7157 -2.4711 0.0000 34 1 3.9322 -1.2366 -2.1395 35 1 3.9332 0.3053 -1.2497 36 1 5.0217 1.0964 -3.2944 37 1 0.5363 -1.7637 -3.0726 38 1 2.1287 0.0539 -4.8780 39 1 1.9414 -1.7271 -4.9360 40 1 -0.2304 -1.5747 -5.9728 41 1 0.6450 -0.2174 -6.7551 42 1 -1.6846 0.2888 -5.4956 43 1 -0.3083 1.4083 -5.2535 44 1 -1.4434 -0.6634 -3.3790 45 1 -0.6404 0.8863 -2.9995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699421972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:35 Heat of formation + Delta-G solvation = -38.448973 kcal Electronic energy + Delta-G solvation = -23470.761336 eV Core-core repulsion = 20488.223478 eV Total energy + Delta-G solvation = -2982.537858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.99498 -37.09330 -34.24341 -33.54264 -31.32543 -30.10963 -28.74379 -27.64006 -26.38889 -25.49648 -23.20170 -21.18742 -20.34407 -19.69223 -19.14826 -18.50229 -16.20564 -15.44009 -15.05024 -14.55834 -14.37706 -14.22261 -13.86398 -13.57362 -13.02284 -12.72846 -12.42682 -12.26731 -12.09898 -11.59276 -11.44807 -11.26505 -11.11423 -10.80955 -10.71068 -10.54647 -10.42138 -10.23341 -10.14920 -10.10118 -10.02071 -9.92672 -9.71473 -9.60689 -9.55494 -9.29957 -8.98554 -8.73695 -7.60075 -6.20445 -5.46242 -3.28330 3.52507 3.62297 3.70424 4.70780 5.13334 5.28947 5.42722 5.50123 5.61495 5.64569 5.66090 5.68662 5.87977 5.94595 6.02925 6.14409 6.21877 6.27794 6.31535 6.33655 6.42011 6.44859 6.49748 6.53395 6.61502 6.64558 6.74064 6.77186 6.77969 6.81480 6.91799 6.97823 7.03838 7.11440 7.20052 7.26365 7.43307 7.64588 7.83976 8.06930 8.15003 8.74502 8.94140 9.45321 9.98499 10.72592 11.29880 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.010354 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.391586 B = 2703.495023 C = 3325.853324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 O -0.509 6.509 4 C -0.143 4.143 5 C -0.110 4.110 6 C -0.125 4.125 7 C -0.116 4.116 8 C 0.207 3.793 9 H 0.040 0.960 10 N -0.567 5.567 11 C -0.237 4.237 12 H 0.042 0.958 13 C 0.061 3.939 14 N -0.858 5.858 15 Si 0.876 3.124 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.306 1.306 19 C 0.171 3.829 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.130 4.130 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.336 0.664 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.247 0.753 37 H 0.035 0.965 38 H 0.102 0.898 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 -4.021 4.704 8.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.085 3.915 3 O -0.311 6.311 4 C -0.181 4.181 5 C -0.147 4.147 6 C -0.163 4.163 7 C -0.155 4.155 8 C 0.100 3.900 9 H 0.058 0.942 10 N -0.287 5.287 11 C -0.367 4.367 12 H 0.059 0.941 13 C -0.142 4.142 14 N -0.497 5.497 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.234 1.234 19 C 0.065 3.935 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.169 4.169 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.180 0.820 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.742 -4.220 4.023 7.516 hybrid contribution 0.204 0.893 1.106 1.437 sum -4.538 -3.327 5.130 7.614 Atomic orbital electron populations 1.22364 0.97418 1.00704 1.01706 1.21713 0.91377 0.83589 0.94840 1.87086 1.75830 1.22039 1.46103 1.22268 0.96625 1.00646 0.98563 1.21394 0.95201 1.00997 0.97125 1.21724 0.99197 0.98436 0.96939 1.22235 0.96489 1.02978 0.93773 1.20380 0.93310 0.91466 0.84852 0.94222 1.43755 1.58511 1.08891 1.17509 1.18111 0.89452 0.82593 1.46507 0.94085 1.25190 0.98114 0.95722 0.95155 1.70445 1.01689 1.38461 1.39094 0.86788 0.78177 0.86238 0.78243 1.20123 1.21817 1.23442 1.21100 0.89849 0.92378 0.90179 1.22829 0.97318 1.02053 0.94438 1.22449 0.97824 0.97751 0.98300 1.22207 0.97344 0.99427 0.96231 1.22543 0.97937 1.00712 0.95712 0.93718 0.94628 0.90495 0.82045 0.93198 0.92420 0.91765 0.93982 0.93641 0.94030 0.91909 0.88590 0.94248 0.94622 0.87924 0.94460 0.93438 0.93190 0.93958 0.91951 0.94466 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.66 37.16 0.32 -2.47 16 2 C 0.13 2.35 0.67 -90.62 -0.06 2.29 16 3 O -0.51 -10.29 8.20 -35.23 -0.29 -10.58 16 4 C -0.14 -2.28 4.92 -26.73 -0.13 -2.41 16 5 C -0.11 -1.84 5.78 -26.73 -0.15 -2.00 16 6 C -0.12 -2.31 5.92 -26.73 -0.16 -2.46 16 7 C -0.12 -2.57 3.61 -26.73 -0.10 -2.66 16 8 C 0.21 4.35 2.02 -67.93 -0.14 4.21 16 9 H 0.04 0.82 7.57 -51.93 -0.39 0.42 16 10 N -0.57 -12.76 1.50 -156.88 -0.24 -13.00 16 11 C -0.24 -5.96 5.24 -15.06 -0.08 -6.04 16 12 H 0.04 1.12 7.23 -52.49 -0.38 0.74 16 13 C 0.06 1.60 3.02 -17.43 -0.05 1.54 16 14 N -0.86 -23.10 10.38 55.49 0.58 -22.53 16 15 Si 0.88 21.73 28.53 -169.99 -4.85 16.88 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 18 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 19 C 0.17 3.56 3.44 -66.81 -0.23 3.33 16 20 C -0.13 -2.69 6.42 -25.07 -0.16 -2.85 16 21 C -0.13 -2.23 6.91 -24.74 -0.17 -2.40 16 22 C -0.11 -2.03 6.83 -25.07 -0.17 -2.20 16 23 C -0.13 -2.45 6.01 -25.61 -0.15 -2.60 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.47 6.51 -51.93 -0.34 1.13 16 27 H 0.34 5.58 9.05 45.56 0.41 5.99 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.17 7.68 -51.93 -0.40 0.77 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.06 1.55 7.53 -51.93 -0.39 1.16 16 35 H 0.10 2.43 4.63 -51.93 -0.24 2.19 16 36 H 0.25 6.63 8.32 -40.82 -0.34 6.29 16 37 H 0.04 0.72 7.58 -51.93 -0.39 0.32 16 38 H 0.10 2.58 6.70 -51.93 -0.35 2.23 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.47 5.92 -51.93 -0.31 1.17 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -26.36 323.93 -8.76 -35.12 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.41 Total: 5.92 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.44 Total: -16.71 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.34 Total: -35.52 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.29 Total: -10.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.85 Total: 16.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.36 -8.76 -35.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.326 kcal (2) G-P(sol) polarization free energy of solvation -26.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds