Wall clock time and date at job start Mon Mar 30 2020 07:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47371 * 2 1 4 4 C 1.52997 * 109.46610 * 120.00044 * 2 1 3 5 5 C 1.53000 * 109.46876 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47499 * 300.00012 * 5 4 2 7 7 C 1.53005 * 109.47137 * 59.99871 * 6 5 4 8 8 C 1.53002 * 109.46765 * 300.00145 * 7 6 5 9 9 H 1.08997 * 109.47207 * 299.99778 * 8 7 6 10 10 N 1.46503 * 109.46751 * 179.97438 * 8 7 6 11 11 C 1.36932 * 120.00288 * 299.16949 * 10 8 7 12 12 H 1.07999 * 120.00202 * 239.32545 * 11 10 8 13 13 C 1.38816 * 119.99847 * 59.60394 * 11 10 8 14 14 N 1.31619 * 120.00023 * 32.98620 * 13 11 10 15 15 Si 1.86803 * 119.99858 * 212.98492 * 13 11 10 16 16 H 1.48502 * 109.47050 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47077 * 119.99866 * 15 13 11 18 18 H 1.48499 * 109.47208 * 240.00062 * 15 13 11 19 19 C 1.46504 * 119.99700 * 119.16972 * 10 8 7 20 20 C 1.54266 * 110.03046 * 241.05606 * 19 10 8 21 21 C 1.54885 * 104.19599 * 217.10490 * 20 19 10 22 22 C 1.54891 * 102.74973 * 37.94392 * 21 20 19 23 23 C 1.53875 * 110.03359 * 123.88954 * 19 10 8 24 24 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47266 * 300.00496 * 1 2 3 26 26 H 1.09005 * 109.46628 * 60.00178 * 1 2 3 27 27 H 0.96699 * 114.00241 * 59.99894 * 3 2 1 28 28 H 1.08995 * 109.47703 * 299.99531 * 4 2 1 29 29 H 1.09006 * 109.47467 * 60.00091 * 4 2 1 30 30 H 1.08999 * 109.47580 * 60.00178 * 5 4 2 31 31 H 1.09004 * 109.47322 * 180.02562 * 5 4 2 32 32 H 1.08999 * 109.47688 * 179.97438 * 6 5 4 33 33 H 1.09009 * 109.47235 * 300.00254 * 6 5 4 34 34 H 1.09001 * 109.46936 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47077 * 60.00003 * 7 6 5 36 36 H 0.96999 * 119.99648 * 184.59230 * 14 13 11 37 37 H 1.09005 * 110.01680 * 2.49891 * 19 10 8 38 38 H 1.09000 * 110.49118 * 335.78450 * 20 19 10 39 39 H 1.09005 * 110.48332 * 98.43099 * 20 19 10 40 40 H 1.09003 * 110.75771 * 279.62628 * 21 20 19 41 41 H 1.09002 * 110.75609 * 156.26153 * 21 20 19 42 42 H 1.08999 * 110.48359 * 203.38161 * 22 21 20 43 43 H 1.08998 * 110.59596 * 80.79194 * 22 21 20 44 44 H 1.08996 * 110.03391 * 238.56756 * 23 19 10 45 45 H 1.09001 * 110.03194 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7219 1.2490 6 6 4.0795 -1.4435 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 6 2.0395 -0.7217 -1.2492 9 1 1.6759 -1.7492 -1.2490 10 7 1.5513 -0.0306 -2.4452 11 6 1.8684 1.2852 -2.6530 12 1 1.0839 2.0219 -2.7440 13 6 3.1981 1.6713 -2.7526 14 7 4.0823 0.8548 -3.2852 15 14 3.7323 3.3498 -2.1307 16 1 2.5564 4.0715 -1.5814 17 1 4.7523 3.1811 -1.0648 18 1 4.3127 4.1315 -3.2520 19 6 0.7237 -0.7472 -3.4187 20 6 1.4279 -0.7765 -4.7909 21 6 0.2746 -0.6220 -5.8132 22 6 -0.6683 0.3889 -5.1145 23 6 -0.6091 -0.0063 -3.6244 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.7211 1.8653 0.7650 28 1 1.6766 -0.2075 2.1392 29 1 1.6765 -1.7490 1.2493 30 1 3.9337 0.3056 1.2488 31 1 3.9332 -1.2361 2.1388 32 1 5.1695 -1.4435 -0.0006 33 1 3.7157 -2.4711 0.0000 34 1 3.9322 -1.2366 -2.1395 35 1 3.9332 0.3053 -1.2497 36 1 5.0217 1.0964 -3.2944 37 1 0.5363 -1.7637 -3.0726 38 1 2.1287 0.0539 -4.8780 39 1 1.9414 -1.7271 -4.9360 40 1 -0.2304 -1.5747 -5.9728 41 1 0.6450 -0.2174 -6.7551 42 1 -1.6846 0.2888 -5.4956 43 1 -0.3083 1.4083 -5.2535 44 1 -1.4434 -0.6634 -3.3790 45 1 -0.6404 0.8863 -2.9995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699421972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:35 Heat of formation + Delta-G solvation = -52.421292 kcal Electronic energy + Delta-G solvation = -23471.367221 eV Core-core repulsion = 20488.223478 eV Total energy + Delta-G solvation = -2983.143743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55070 -38.65933 -35.85983 -35.18021 -33.14253 -31.64826 -30.29553 -29.21337 -28.04599 -27.05804 -24.95337 -22.72946 -21.84503 -21.20163 -20.87096 -20.07980 -18.01815 -16.97797 -16.67018 -16.38070 -16.01623 -15.83662 -15.46161 -15.05532 -14.55094 -14.25978 -14.11619 -13.84674 -13.59042 -13.24173 -13.08252 -12.90139 -12.76686 -12.52415 -12.41162 -12.08926 -12.01513 -11.90510 -11.77922 -11.66254 -11.64808 -11.59008 -11.31177 -11.25086 -11.16846 -10.99977 -10.55614 -10.21018 -9.58296 -8.16474 -7.36398 -5.29046 1.47730 1.55765 1.65206 2.70737 3.40888 3.62404 3.89127 4.07197 4.11873 4.13419 4.21998 4.25528 4.42893 4.51610 4.58718 4.72524 4.76411 4.82673 4.90272 4.94105 4.95837 5.01179 5.02610 5.08261 5.11162 5.12032 5.21415 5.29105 5.31141 5.34162 5.41492 5.46002 5.55203 5.56799 5.69105 5.69972 5.84071 5.90078 6.01297 6.03502 6.30120 6.87026 7.40546 7.58417 8.09733 8.78594 9.26734 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.010354 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.391586 B = 2703.495023 C = 3325.853324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 O -0.539 6.539 4 C -0.134 4.134 5 C -0.105 4.105 6 C -0.121 4.121 7 C -0.105 4.105 8 C 0.200 3.800 9 H 0.047 0.953 10 N -0.575 5.575 11 C -0.212 4.212 12 H 0.020 0.980 13 C 0.033 3.967 14 N -0.879 5.879 15 Si 0.912 3.088 16 H -0.274 1.274 17 H -0.300 1.300 18 H -0.318 1.318 19 C 0.164 3.836 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.121 4.121 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.353 0.647 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.062 0.938 36 H 0.239 0.761 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 -5.314 6.199 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.085 3.915 3 O -0.342 6.342 4 C -0.173 4.173 5 C -0.142 4.142 6 C -0.160 4.160 7 C -0.145 4.145 8 C 0.093 3.907 9 H 0.065 0.935 10 N -0.295 5.295 11 C -0.342 4.342 12 H 0.037 0.963 13 C -0.168 4.168 14 N -0.520 5.520 15 Si 0.743 3.257 16 H -0.199 1.199 17 H -0.228 1.228 18 H -0.248 1.248 19 C 0.058 3.942 20 C -0.167 4.167 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.160 4.160 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.198 0.802 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.866 -5.508 5.535 10.398 hybrid contribution 0.848 1.263 0.628 1.646 sum -6.019 -4.245 6.163 9.603 Atomic orbital electron populations 1.22236 0.95981 1.01490 1.01550 1.21639 0.92351 0.82937 0.94605 1.87011 1.76444 1.23238 1.47523 1.22188 0.95677 1.01425 0.97976 1.21348 0.96013 0.99840 0.97047 1.21664 0.99076 0.99096 0.96141 1.21971 0.97566 1.00861 0.94078 1.20474 0.92397 0.92107 0.85687 0.93472 1.43854 1.58692 1.08239 1.18683 1.17850 0.88457 0.83511 1.44407 0.96258 1.25431 0.98512 0.96692 0.96133 1.70531 1.01184 1.39300 1.40967 0.86227 0.77490 0.84789 0.77170 1.19907 1.22760 1.24759 1.21263 0.90454 0.93034 0.89449 1.22708 0.97756 0.99790 0.96423 1.22393 0.96429 0.99127 0.97340 1.22181 0.98989 0.98157 0.95536 1.22417 0.97479 0.99967 0.96120 0.92388 0.92345 0.93085 0.80184 0.90648 0.90869 0.93735 0.91086 0.93990 0.92337 0.95777 0.91900 0.95186 0.93614 0.92388 0.95093 0.90797 0.92786 0.90754 0.94025 0.91902 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 8.66 71.98 0.62 -4.19 16 2 C 0.13 4.42 0.67 -10.79 -0.01 4.41 16 3 O -0.54 -21.27 8.20 -148.98 -1.22 -22.49 16 4 C -0.13 -3.80 4.92 30.59 0.15 -3.65 16 5 C -0.11 -3.26 5.78 30.59 0.18 -3.08 16 6 C -0.12 -4.36 5.92 30.60 0.18 -4.18 16 7 C -0.11 -4.75 3.61 30.60 0.11 -4.64 16 8 C 0.20 8.28 2.02 44.99 0.09 8.37 16 9 H 0.05 1.87 7.57 -2.39 -0.02 1.85 16 10 N -0.57 -26.04 1.50 -650.23 -0.97 -27.02 16 11 C -0.21 -10.89 5.24 84.04 0.44 -10.45 16 12 H 0.02 1.11 7.23 -2.91 -0.02 1.08 16 13 C 0.03 1.76 3.02 84.86 0.26 2.02 16 14 N -0.88 -49.60 10.38 21.65 0.22 -49.38 16 15 Si 0.91 46.09 28.53 68.60 1.96 48.05 16 16 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 18 H -0.32 -16.57 7.11 99.48 0.71 -15.87 16 19 C 0.16 6.72 3.44 45.72 0.16 6.87 16 20 C -0.13 -5.42 6.42 31.67 0.20 -5.22 16 21 C -0.11 -3.90 6.91 31.88 0.22 -3.68 16 22 C -0.11 -3.72 6.83 31.67 0.22 -3.51 16 23 C -0.12 -4.36 6.01 31.32 0.19 -4.17 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.86 6.51 -2.38 -0.02 1.84 16 27 H 0.35 11.13 9.05 -74.06 -0.67 10.46 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.88 8.14 -2.38 -0.02 1.87 16 30 H 0.04 1.56 7.68 -2.39 -0.02 1.54 16 31 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.02 1.22 7.53 -2.39 -0.02 1.21 16 35 H 0.06 3.28 4.63 -2.39 -0.01 3.26 16 36 H 0.24 13.49 8.32 -92.71 -0.77 12.72 16 37 H 0.05 1.77 7.58 -2.38 -0.02 1.75 16 38 H 0.06 3.01 6.70 -2.39 -0.02 3.00 16 39 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 2.03 5.92 -2.39 -0.01 2.01 16 Total: -1.00 -59.42 323.93 3.27 -56.15 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.28 Total: 19.79 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 3.01 Total: -25.10 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -0.75 Total: -76.40 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.22 Total: -22.49 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.96 Total: 48.05 kcal Total: -59.42 3.27 -56.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.728 kcal (2) G-P(sol) polarization free energy of solvation -59.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds