Wall clock time and date at job start Mon Mar 30 2020 07:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42903 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47374 * 240.00158 * 2 1 3 5 5 C 1.53004 * 109.46672 * 300.00183 * 4 2 1 6 6 C 1.52999 * 109.46689 * 299.99196 * 5 4 2 7 7 C 1.53005 * 109.47241 * 60.00775 * 6 5 4 8 8 C 1.52999 * 109.47720 * 119.99901 * 2 1 3 9 9 H 1.08993 * 109.47587 * 179.97438 * 8 2 1 10 10 N 1.46903 * 109.47133 * 300.00354 * 8 2 1 11 11 C 1.46847 * 111.00232 * 162.21106 * 10 8 2 12 12 C 1.53037 * 109.52348 * 185.83780 * 11 10 8 13 13 C 1.53118 * 109.27898 * 300.81782 * 12 11 10 14 14 C 1.53121 * 109.21190 * 57.62216 * 13 12 11 15 15 H 1.09005 * 109.50242 * 62.31679 * 14 13 12 16 16 C 1.50695 * 109.50387 * 182.43341 * 14 13 12 17 17 H 1.08004 * 119.99571 * 119.99718 * 16 14 13 18 18 C 1.37874 * 120.00273 * 300.00640 * 16 14 13 19 19 N 1.31516 * 119.99706 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00168 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46911 * 89.99668 * 20 18 16 22 22 H 1.48498 * 109.47201 * 209.99790 * 20 18 16 23 23 H 1.48495 * 109.47037 * 330.00094 * 20 18 16 24 24 C 1.46849 * 110.99596 * 286.41969 * 10 8 2 25 25 H 1.09005 * 109.47110 * 301.16789 * 1 2 3 26 26 H 1.08994 * 109.47556 * 61.16983 * 1 2 3 27 27 H 1.09003 * 109.47297 * 181.17542 * 1 2 3 28 28 H 0.96702 * 113.99779 * 300.00405 * 3 2 1 29 29 H 1.08998 * 109.46589 * 59.99313 * 4 2 1 30 30 H 1.08998 * 109.47443 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47315 * 59.99618 * 5 4 2 32 32 H 1.09001 * 109.46695 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46924 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47587 * 300.00255 * 6 5 4 35 35 H 1.08998 * 109.46924 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47057 * 59.98966 * 7 6 5 37 37 H 1.09000 * 109.46302 * 65.82044 * 11 10 8 38 38 H 1.09005 * 109.44720 * 305.85003 * 11 10 8 39 39 H 1.08994 * 109.50020 * 180.87530 * 12 11 10 40 40 H 1.08998 * 109.50250 * 60.76351 * 12 11 10 41 41 H 1.08993 * 109.52167 * 177.55807 * 13 12 11 42 42 H 1.08997 * 109.52039 * 297.69120 * 13 12 11 43 43 H 0.97002 * 119.99721 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.46125 * 294.17504 * 24 10 8 45 45 H 1.08993 * 109.46279 * 54.15592 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1637 1.2493 8 6 2.0401 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2489 10 7 1.5504 -0.0287 2.4487 11 6 1.6485 -0.8927 3.6321 12 6 0.9983 -0.1958 4.8294 13 6 1.7090 1.1359 5.0864 14 6 1.6357 1.9981 3.8231 15 1 0.5932 2.2183 3.5929 16 6 2.3847 3.2861 4.0489 17 1 3.2254 3.5392 3.4200 18 6 1.9968 4.1413 5.0584 19 7 0.9729 3.8333 5.8240 20 14 2.9258 5.7376 5.3387 21 1 2.3109 6.8174 4.5256 22 1 2.8605 6.1024 6.7767 23 1 4.3444 5.5619 4.9366 24 6 2.2659 1.2370 2.6545 25 1 -0.3633 0.5319 0.8794 26 1 -0.3634 0.4955 -0.9002 27 1 -0.3634 -1.0275 0.0211 28 1 1.7209 1.8654 -0.7650 29 1 1.6765 -0.2074 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 0.4400 -2.1637 -1.2492 32 1 1.8937 -2.6777 -2.1390 33 1 1.6771 -3.9128 -0.0002 34 1 3.1300 -2.8849 -0.0001 35 1 1.8931 -2.6778 2.1392 36 1 0.4401 -2.1637 1.2493 37 1 2.6978 -1.0894 3.8521 38 1 1.1354 -1.8345 3.4373 39 1 1.0851 -0.8307 5.7111 40 1 -0.0544 -0.0112 4.6155 41 1 1.2215 1.6557 5.9110 42 1 2.7526 0.9489 5.3396 43 1 0.7002 4.4348 6.5345 44 1 3.3124 1.0302 2.8792 45 1 2.2013 1.8419 1.7502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703798983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:18 Heat of formation + Delta-G solvation = -62.232900 kcal Electronic energy + Delta-G solvation = -22513.620554 eV Core-core repulsion = 19530.051348 eV Total energy + Delta-G solvation = -2983.569206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05111 -37.23695 -35.46460 -33.48154 -31.63853 -30.48921 -29.75115 -28.76156 -26.34242 -24.92792 -23.22405 -22.35277 -21.15241 -20.59714 -18.57351 -18.45835 -16.87113 -16.19476 -15.44745 -15.21601 -14.73592 -14.39126 -13.85242 -13.80903 -13.46311 -13.29289 -12.79159 -12.54080 -12.49777 -12.17966 -12.00598 -11.91724 -11.40723 -11.29256 -11.15891 -11.12272 -10.85375 -10.76901 -10.57072 -10.55168 -10.36119 -10.06085 -9.77598 -9.66770 -9.57785 -9.23290 -8.70993 -8.45407 -8.18112 -7.44544 -5.86298 -3.90943 3.37480 3.43619 3.47556 4.31889 4.42906 4.57160 4.71714 4.96788 5.01089 5.19506 5.32934 5.38008 5.39303 5.43770 5.49405 5.64623 5.77738 5.83796 5.93120 5.94956 5.96145 6.02295 6.07723 6.13745 6.19265 6.21086 6.36867 6.41046 6.47532 6.63877 6.74752 6.86854 6.88367 6.94826 7.33456 7.39730 7.57546 7.86066 7.90446 7.97291 8.11695 8.27030 8.32899 8.64871 9.13834 9.72394 11.19781 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028202 B = 0.005635 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.602332 B = 4968.047506 C = 5564.862281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.142 3.858 3 O -0.541 6.541 4 C -0.144 4.144 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.121 4.121 8 C 0.101 3.899 9 H 0.037 0.963 10 N -0.525 5.525 11 C 0.055 3.945 12 C -0.116 4.116 13 C -0.112 4.112 14 C 0.056 3.944 15 H 0.030 0.970 16 C -0.506 4.506 17 H 0.052 0.948 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.058 3.942 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.362 0.638 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.027 0.973 43 H 0.257 0.743 44 H 0.006 0.994 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 -12.467 -12.253 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.101 3.899 3 O -0.347 6.347 4 C -0.182 4.182 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.158 4.158 8 C -0.008 4.008 9 H 0.055 0.945 10 N -0.249 5.249 11 C -0.072 4.072 12 C -0.153 4.153 13 C -0.150 4.150 14 C 0.038 3.962 15 H 0.048 0.952 16 C -0.545 4.545 17 H 0.070 0.930 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.068 4.068 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.210 0.790 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.749 -12.479 -11.596 17.052 hybrid contribution 1.192 0.841 -0.155 1.467 sum 0.442 -11.638 -11.751 16.545 Atomic orbital electron populations 1.22414 0.95447 1.02255 1.02472 1.21099 0.93275 0.82236 0.93280 1.86756 1.77021 1.22910 1.48009 1.22256 1.01408 0.96347 0.98209 1.21543 1.01118 0.95125 0.97705 1.21567 1.00764 0.98773 0.94683 1.21842 1.01906 0.94409 0.97684 1.21431 0.96716 0.92062 0.90576 0.94542 1.62039 1.56820 1.05055 1.01027 1.22169 0.97856 0.95661 0.91560 1.21656 1.00439 0.98392 0.94859 1.21660 0.97498 0.92888 1.02919 1.18644 0.96594 0.91979 0.89025 0.95155 1.21181 1.14636 1.03655 1.15070 0.92959 1.24928 0.95099 0.97837 0.96080 1.69903 1.26488 1.36689 1.19981 0.86662 0.80329 0.84249 0.77125 1.20789 1.21407 1.20092 1.22691 0.93239 0.88732 1.02131 0.89961 0.93775 0.92012 0.79041 0.91899 0.91605 0.91461 0.92235 0.91916 0.92159 0.91235 0.90643 0.96367 0.92045 0.93874 0.92272 0.89351 0.95459 0.93266 0.97536 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 7.94 37.15 0.30 -1.96 16 2 C 0.14 1.98 0.91 -90.62 -0.08 1.90 16 3 O -0.54 -8.56 9.62 -35.23 -0.34 -8.90 16 4 C -0.14 -1.60 5.07 -26.73 -0.14 -1.74 16 5 C -0.12 -1.14 5.65 -26.73 -0.15 -1.29 16 6 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 7 C -0.12 -1.53 4.02 -26.73 -0.11 -1.63 16 8 C 0.10 1.59 1.61 -67.71 -0.11 1.49 16 9 H 0.04 0.64 8.03 -51.93 -0.42 0.22 16 10 N -0.53 -9.98 3.77 -226.68 -0.86 -10.84 16 11 C 0.06 1.01 4.73 -3.83 -0.02 0.99 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 13 C -0.11 -2.76 5.02 -26.61 -0.13 -2.90 16 14 C 0.06 1.48 2.27 -91.69 -0.21 1.27 16 15 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.51 -14.47 8.57 -34.44 -0.30 -14.77 16 17 H 0.05 1.49 7.75 -52.48 -0.41 1.09 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -26.16 11.35 55.43 0.63 -25.54 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.06 1.32 4.40 -3.83 -0.02 1.31 16 25 H 0.08 1.36 7.64 -51.93 -0.40 0.97 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 28 H 0.36 4.26 9.05 45.56 0.41 4.68 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.64 6.45 -51.93 -0.34 0.30 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.88 6.25 -51.93 -0.32 0.55 16 36 H 0.07 0.95 6.40 -51.93 -0.33 0.62 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.97 5.83 -51.93 -0.30 0.66 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.10 2.32 4.80 -51.93 -0.25 2.07 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -30.11 322.28 -9.24 -39.34 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.13 Total: 3.76 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -1.38 Total: -19.59 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.23 Total: -36.37 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.34 Total: -8.90 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.11 -9.24 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703798983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.889 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds