Wall clock time and date at job start Mon Mar 30 2020 07:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42903 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47374 * 240.00158 * 2 1 3 5 5 C 1.53004 * 109.46672 * 300.00183 * 4 2 1 6 6 C 1.52999 * 109.46689 * 299.99196 * 5 4 2 7 7 C 1.53005 * 109.47241 * 60.00775 * 6 5 4 8 8 C 1.52999 * 109.47720 * 119.99901 * 2 1 3 9 9 H 1.08993 * 109.47587 * 179.97438 * 8 2 1 10 10 N 1.46903 * 109.47133 * 300.00354 * 8 2 1 11 11 C 1.46847 * 111.00232 * 162.21106 * 10 8 2 12 12 C 1.53037 * 109.52348 * 185.83780 * 11 10 8 13 13 C 1.53118 * 109.27898 * 300.81782 * 12 11 10 14 14 C 1.53121 * 109.21190 * 57.62216 * 13 12 11 15 15 H 1.09005 * 109.50242 * 62.31679 * 14 13 12 16 16 C 1.50695 * 109.50387 * 182.43341 * 14 13 12 17 17 H 1.08004 * 119.99571 * 119.99718 * 16 14 13 18 18 C 1.37874 * 120.00273 * 300.00640 * 16 14 13 19 19 N 1.31516 * 119.99706 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00168 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46911 * 89.99668 * 20 18 16 22 22 H 1.48498 * 109.47201 * 209.99790 * 20 18 16 23 23 H 1.48495 * 109.47037 * 330.00094 * 20 18 16 24 24 C 1.46849 * 110.99596 * 286.41969 * 10 8 2 25 25 H 1.09005 * 109.47110 * 301.16789 * 1 2 3 26 26 H 1.08994 * 109.47556 * 61.16983 * 1 2 3 27 27 H 1.09003 * 109.47297 * 181.17542 * 1 2 3 28 28 H 0.96702 * 113.99779 * 300.00405 * 3 2 1 29 29 H 1.08998 * 109.46589 * 59.99313 * 4 2 1 30 30 H 1.08998 * 109.47443 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47315 * 59.99618 * 5 4 2 32 32 H 1.09001 * 109.46695 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46924 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47587 * 300.00255 * 6 5 4 35 35 H 1.08998 * 109.46924 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47057 * 59.98966 * 7 6 5 37 37 H 1.09000 * 109.46302 * 65.82044 * 11 10 8 38 38 H 1.09005 * 109.44720 * 305.85003 * 11 10 8 39 39 H 1.08994 * 109.50020 * 180.87530 * 12 11 10 40 40 H 1.08998 * 109.50250 * 60.76351 * 12 11 10 41 41 H 1.08993 * 109.52167 * 177.55807 * 13 12 11 42 42 H 1.08997 * 109.52039 * 297.69120 * 13 12 11 43 43 H 0.97002 * 119.99721 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.46125 * 294.17504 * 24 10 8 45 45 H 1.08993 * 109.46279 * 54.15592 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1637 1.2493 8 6 2.0401 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2489 10 7 1.5504 -0.0287 2.4487 11 6 1.6485 -0.8927 3.6321 12 6 0.9983 -0.1958 4.8294 13 6 1.7090 1.1359 5.0864 14 6 1.6357 1.9981 3.8231 15 1 0.5932 2.2183 3.5929 16 6 2.3847 3.2861 4.0489 17 1 3.2254 3.5392 3.4200 18 6 1.9968 4.1413 5.0584 19 7 0.9729 3.8333 5.8240 20 14 2.9258 5.7376 5.3387 21 1 2.3109 6.8174 4.5256 22 1 2.8605 6.1024 6.7767 23 1 4.3444 5.5619 4.9366 24 6 2.2659 1.2370 2.6545 25 1 -0.3633 0.5319 0.8794 26 1 -0.3634 0.4955 -0.9002 27 1 -0.3634 -1.0275 0.0211 28 1 1.7209 1.8654 -0.7650 29 1 1.6765 -0.2074 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 0.4400 -2.1637 -1.2492 32 1 1.8937 -2.6777 -2.1390 33 1 1.6771 -3.9128 -0.0002 34 1 3.1300 -2.8849 -0.0001 35 1 1.8931 -2.6778 2.1392 36 1 0.4401 -2.1637 1.2493 37 1 2.6978 -1.0894 3.8521 38 1 1.1354 -1.8345 3.4373 39 1 1.0851 -0.8307 5.7111 40 1 -0.0544 -0.0112 4.6155 41 1 1.2215 1.6557 5.9110 42 1 2.7526 0.9489 5.3396 43 1 0.7002 4.4348 6.5345 44 1 3.3124 1.0302 2.8792 45 1 2.2013 1.8419 1.7502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703798983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:17 Heat of formation + Delta-G solvation = -81.951381 kcal Electronic energy + Delta-G solvation = -22514.475612 eV Core-core repulsion = 19530.051348 eV Total energy + Delta-G solvation = -2984.424264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25520 -38.81457 -36.58774 -35.32513 -33.38186 -31.80900 -31.30109 -30.04849 -27.47367 -26.94724 -24.68339 -23.83341 -22.29462 -22.13242 -20.31865 -19.68162 -18.43660 -17.89770 -16.75984 -16.59138 -16.45428 -15.65549 -15.39592 -15.12794 -14.69890 -14.63065 -14.29605 -14.21300 -13.87683 -13.81027 -13.27249 -13.10033 -12.90410 -12.82059 -12.62532 -12.54942 -12.44506 -12.21111 -12.13513 -11.84948 -11.64556 -11.55922 -11.35537 -11.32199 -10.94489 -10.81379 -10.64608 -10.35823 -10.19480 -9.02862 -8.06684 -6.20343 1.39540 1.40105 1.50828 2.43140 3.08586 3.19330 3.31957 3.74981 4.00231 4.02454 4.22988 4.25272 4.28677 4.31600 4.35834 4.44899 4.51747 4.54324 4.65466 4.75886 4.85814 4.88910 4.93690 5.00177 5.03712 5.06541 5.13119 5.15786 5.23223 5.25846 5.27071 5.35621 5.40399 5.46196 5.49630 5.63842 5.66128 5.68989 6.00983 6.22411 6.26584 6.47861 6.54070 6.92293 7.05119 7.46812 8.97995 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028202 B = 0.005635 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.602332 B = 4968.047506 C = 5564.862281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 O -0.572 6.572 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.116 4.116 8 C 0.096 3.904 9 H 0.016 0.984 10 N -0.528 5.528 11 C 0.057 3.943 12 C -0.109 4.109 13 C -0.105 4.105 14 C 0.057 3.943 15 H -0.007 1.007 16 C -0.533 4.533 17 H 0.044 0.956 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.272 1.272 24 C 0.076 3.924 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.378 0.622 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.014 0.986 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.014 0.986 43 H 0.260 0.740 44 H -0.015 1.015 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 -14.135 -13.846 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.096 3.904 3 O -0.380 6.380 4 C -0.175 4.175 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.012 4.012 9 H 0.034 0.966 10 N -0.252 5.252 11 C -0.070 4.070 12 C -0.147 4.147 13 C -0.143 4.143 14 C 0.038 3.962 15 H 0.011 0.989 16 C -0.572 4.572 17 H 0.062 0.938 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.780 3.220 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.197 1.197 24 C -0.051 4.051 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.228 0.772 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.032 0.968 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.003 0.997 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.856 -14.159 -13.210 19.383 hybrid contribution 1.208 1.376 0.333 1.861 sum 0.352 -12.784 -12.877 18.148 Atomic orbital electron populations 1.22329 0.94889 1.02989 1.01621 1.21244 0.93636 0.81632 0.93839 1.86659 1.77563 1.24334 1.49470 1.22179 1.00828 0.97392 0.97059 1.21564 1.01587 0.93835 0.98224 1.21562 1.00610 0.99695 0.93526 1.21830 1.02079 0.92090 0.99363 1.21653 0.95658 0.94212 0.89722 0.96634 1.61994 1.56237 1.04309 1.02655 1.22211 0.97806 0.96583 0.90410 1.21572 0.99465 0.96482 0.97133 1.21475 0.96818 0.94980 1.01061 1.18548 0.94235 0.92281 0.91109 0.98857 1.21499 1.14906 1.05288 1.15499 0.93800 1.25711 0.95919 1.01165 0.95636 1.70041 1.27534 1.37795 1.20204 0.85623 0.79067 0.80045 0.77312 1.19922 1.20601 1.19656 1.22314 0.91837 0.90566 1.00364 0.93697 0.91851 0.90287 0.77217 0.90107 0.92505 0.90642 0.90151 0.89596 0.92496 0.91128 0.90169 0.96812 0.88343 0.91360 0.92945 0.92434 0.96706 0.93091 0.99668 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 7.94 71.98 0.57 -3.50 16 2 C 0.14 3.67 0.91 -10.80 -0.01 3.66 16 3 O -0.57 -18.23 9.62 -148.98 -1.43 -19.67 16 4 C -0.14 -2.68 5.07 30.60 0.16 -2.53 16 5 C -0.11 -1.77 5.65 30.60 0.17 -1.60 16 6 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 7 C -0.12 -2.63 4.02 30.60 0.12 -2.51 16 8 C 0.10 2.96 1.61 44.92 0.07 3.03 16 9 H 0.02 0.55 8.03 -2.39 -0.02 0.53 16 10 N -0.53 -20.26 3.77 -871.08 -3.29 -23.54 16 11 C 0.06 2.06 4.73 86.33 0.41 2.47 16 12 C -0.11 -4.44 6.09 30.65 0.19 -4.25 16 13 C -0.11 -5.42 5.02 30.67 0.15 -5.27 16 14 C 0.06 3.14 2.27 -11.49 -0.03 3.12 16 15 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 16 C -0.53 -31.76 8.57 25.60 0.22 -31.54 16 17 H 0.04 2.61 7.75 -2.91 -0.02 2.59 16 18 C 0.01 0.82 5.30 84.65 0.45 1.27 16 19 N -0.92 -55.43 11.35 21.45 0.24 -55.19 16 20 Si 0.95 45.80 29.54 68.60 2.03 47.83 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 24 C 0.08 3.62 4.40 86.33 0.38 4.00 16 25 H 0.04 1.48 7.64 -2.38 -0.02 1.46 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.69 4.81 -2.39 -0.01 1.68 16 28 H 0.38 8.82 9.05 -74.06 -0.67 8.15 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.08 6.45 -2.39 -0.02 1.07 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.58 6.25 -2.39 -0.01 1.57 16 36 H 0.08 1.77 6.40 -2.39 -0.02 1.75 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 2.84 5.83 -2.38 -0.01 2.83 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.06 3.30 6.15 -2.39 -0.01 3.29 16 42 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 44 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 45 H 0.09 4.59 4.80 -2.39 -0.01 4.58 16 Total: -1.00 -68.24 322.28 0.88 -67.36 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.29 Total: 18.65 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.04 Total: -35.43 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -3.04 Total: -78.73 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.43 Total: -19.67 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.24 0.88 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703798983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.590 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds