Wall clock time and date at job start Mon Mar 30 2020 07:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47318 * 2 1 4 4 C 1.53002 * 109.47321 * 239.99470 * 2 1 3 5 5 C 1.52995 * 109.46987 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.47191 * 60.00564 * 5 4 2 7 7 C 1.53002 * 109.46695 * 299.99615 * 6 5 4 8 8 C 1.53000 * 109.47321 * 60.00190 * 7 6 5 9 9 H 1.09006 * 109.47278 * 59.99324 * 8 7 6 10 10 N 1.46898 * 109.47274 * 179.97438 * 8 7 6 11 11 C 1.46836 * 111.00188 * 45.68382 * 10 8 7 12 12 C 1.53036 * 109.52739 * 174.16264 * 11 10 8 13 13 C 1.53120 * 109.27704 * 59.17538 * 12 11 10 14 14 C 1.53121 * 109.16337 * 302.35111 * 13 12 11 15 15 H 1.09000 * 109.49849 * 297.67574 * 14 13 12 16 16 C 1.50700 * 109.50266 * 177.59698 * 14 13 12 17 17 H 1.07996 * 119.99479 * 245.34408 * 16 14 13 18 18 C 1.37874 * 120.00086 * 65.34484 * 16 14 13 19 19 N 1.31511 * 120.00486 * 6.49167 * 18 16 14 20 20 Si 1.86802 * 119.99694 * 186.48749 * 18 16 14 21 21 H 1.48494 * 109.47237 * 94.77251 * 20 18 16 22 22 H 1.48503 * 109.47134 * 214.77202 * 20 18 16 23 23 H 1.48494 * 109.47240 * 334.76923 * 20 18 16 24 24 C 1.46851 * 110.99599 * 281.46898 * 10 8 7 25 25 H 1.08999 * 109.47147 * 185.04807 * 1 2 3 26 26 H 1.09003 * 109.47295 * 305.04967 * 1 2 3 27 27 H 1.09002 * 109.47132 * 65.04820 * 1 2 3 28 28 H 0.96698 * 113.99996 * 299.99733 * 3 2 1 29 29 H 1.08997 * 109.47067 * 300.00154 * 4 2 1 30 30 H 1.09002 * 109.46849 * 60.00472 * 4 2 1 31 31 H 1.08998 * 109.47394 * 179.97438 * 5 4 2 32 32 H 1.08994 * 109.47907 * 300.00577 * 5 4 2 33 33 H 1.09001 * 109.47017 * 59.99175 * 6 5 4 34 34 H 1.09001 * 109.47435 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46849 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47534 * 300.00130 * 7 6 5 37 37 H 1.09000 * 109.46533 * 294.17720 * 11 10 8 38 38 H 1.08998 * 109.46389 * 54.15765 * 11 10 8 39 39 H 1.08997 * 109.50938 * 179.11966 * 12 11 10 40 40 H 1.08999 * 109.50062 * 299.20242 * 12 11 10 41 41 H 1.09002 * 109.52321 * 62.25915 * 13 12 11 42 42 H 1.08999 * 109.52450 * 182.44367 * 13 12 11 43 43 H 0.96995 * 120.00785 * 179.97438 * 19 18 16 44 44 H 1.08992 * 109.46599 * 305.85854 * 24 10 8 45 45 H 1.09004 * 109.45777 * 65.82936 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2494 6 6 4.0805 -1.4417 -0.0001 7 6 3.5705 -0.7203 1.2491 8 6 2.0405 -0.7208 1.2494 9 1 1.6775 -1.7487 1.2496 10 7 1.5508 -0.0288 2.4490 11 6 2.2779 1.2285 2.6649 12 6 1.6470 1.9902 3.8328 13 6 1.7055 1.1222 5.0929 14 6 0.9829 -0.2011 4.8257 15 1 -0.0668 -0.0047 4.6070 16 6 1.0867 -1.0854 6.0415 17 1 1.6400 -2.0114 5.9899 18 6 0.4751 -0.7124 7.2195 19 7 -0.3033 0.3472 7.2496 20 14 0.7523 -1.7121 8.7730 21 1 1.8552 -1.1062 9.5613 22 1 -0.4908 -1.7193 9.5853 23 1 1.1126 -3.1054 8.4072 24 6 1.6330 -0.8992 3.6290 25 1 -0.3633 -1.0237 0.0904 26 1 -0.3634 0.5902 0.8413 27 1 -0.3633 0.4335 -0.9318 28 1 1.7211 1.8653 -0.7651 29 1 1.6767 -1.7490 -1.2491 30 1 1.6768 -0.2075 -2.1392 31 1 3.9334 -1.2350 -2.1391 32 1 3.9331 0.3069 -1.2496 33 1 3.7175 -2.4694 0.0002 34 1 5.1705 -1.4417 -0.0005 35 1 3.9338 -1.2341 2.1391 36 1 3.9334 0.3075 1.2488 37 1 3.3207 1.0102 2.8948 38 1 2.2248 1.8382 1.7630 39 1 2.1966 2.9160 4.0028 40 1 0.6082 2.2216 3.5976 41 1 2.7459 0.9236 5.3504 42 1 1.2184 1.6433 5.9171 43 1 -0.7338 0.6094 8.0782 44 1 1.1117 -1.8348 3.4271 45 1 2.6789 -1.1075 3.8544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703798984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:21 Heat of formation + Delta-G solvation = -69.761072 kcal Electronic energy + Delta-G solvation = -22469.839553 eV Core-core repulsion = 19485.943901 eV Total energy + Delta-G solvation = -2983.895652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07144 -37.25834 -35.02569 -33.46377 -31.78150 -31.15662 -29.77104 -28.60787 -26.03194 -24.82087 -23.47485 -21.60941 -21.46802 -20.92337 -19.35823 -18.19015 -16.52847 -16.21138 -15.45610 -15.02116 -14.65266 -14.32918 -13.99159 -13.67835 -13.63407 -13.22110 -12.90985 -12.58807 -12.37505 -12.13213 -12.06552 -11.77104 -11.68735 -11.43126 -11.19078 -10.97092 -10.90835 -10.85240 -10.65831 -10.56306 -10.33983 -9.98059 -9.91903 -9.70898 -9.56625 -9.35073 -8.77452 -8.59019 -8.23755 -7.40338 -5.93607 -3.96232 3.34094 3.41176 3.44035 4.35048 4.42295 4.57054 4.72915 4.87824 5.07032 5.18740 5.24579 5.38605 5.47720 5.50634 5.56505 5.73693 5.76195 5.92331 5.93697 6.00331 6.02885 6.07182 6.15790 6.18852 6.22408 6.27302 6.40329 6.51110 6.59967 6.60966 6.64340 6.70746 6.87024 7.02159 7.09710 7.32531 7.47079 7.80463 7.81914 7.91389 8.00542 8.11938 8.21735 8.56530 9.08845 9.66888 11.15102 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.005159 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.756937 B = 5425.672590 C = 5681.354956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 O -0.543 6.543 4 C -0.144 4.144 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.149 4.149 8 C 0.101 3.899 9 H 0.081 0.919 10 N -0.524 5.524 11 C 0.053 3.947 12 C -0.117 4.117 13 C -0.105 4.105 14 C 0.056 3.944 15 H 0.038 0.962 16 C -0.515 4.515 17 H 0.052 0.948 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.886 3.114 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.066 3.934 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.360 0.640 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.017 0.983 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.259 0.741 44 H 0.054 0.946 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 0.157 -17.111 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.103 3.897 3 O -0.349 6.349 4 C -0.182 4.182 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.188 4.188 8 C -0.008 4.008 9 H 0.099 0.901 10 N -0.246 5.246 11 C -0.074 4.074 12 C -0.155 4.155 13 C -0.144 4.144 14 C 0.037 3.963 15 H 0.057 0.943 16 C -0.553 4.553 17 H 0.070 0.930 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.714 3.286 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.061 4.061 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.207 0.793 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 4.813 0.175 -16.477 17.166 hybrid contribution 0.755 -0.674 0.600 1.176 sum 5.568 -0.500 -15.877 16.832 Atomic orbital electron populations 1.22318 0.95336 1.02824 1.01931 1.21181 0.92761 0.82127 0.93627 1.86629 1.77111 1.23235 1.47942 1.22240 0.96496 1.01456 0.98007 1.21438 0.95186 1.01117 0.97349 1.21484 0.99862 0.99065 0.94889 1.22191 0.97563 1.01678 0.97367 1.21631 0.92317 0.96735 0.90143 0.90133 1.62129 1.54678 1.05122 1.02703 1.22400 0.94023 0.91456 0.99557 1.21672 1.00173 0.97334 0.96355 1.21584 0.98799 0.98076 0.95894 1.18640 0.95799 0.91697 0.90181 0.94343 1.21154 1.32540 1.06121 0.95529 0.92992 1.24921 0.94763 0.95255 0.98744 1.69960 1.30136 1.25798 1.26688 0.86682 0.77572 0.80581 0.83756 1.20843 1.21320 1.19992 1.22314 0.98030 0.95259 0.90480 0.92277 0.90047 0.93768 0.79257 0.91330 0.91991 0.92695 0.91482 0.92458 0.92498 0.92240 0.90583 0.96441 0.88499 0.93999 0.92388 0.95244 0.90964 0.93155 0.92703 0.96565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.58 37.16 0.32 -1.78 16 2 C 0.14 1.79 0.74 -90.61 -0.07 1.72 16 3 O -0.54 -6.70 8.32 -35.23 -0.29 -6.99 16 4 C -0.14 -1.46 4.92 -26.73 -0.13 -1.59 16 5 C -0.11 -1.16 5.78 -26.73 -0.15 -1.31 16 6 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 7 C -0.15 -2.14 4.13 -26.73 -0.11 -2.25 16 8 C 0.10 1.54 1.57 -67.71 -0.11 1.43 16 9 H 0.08 1.24 7.82 -51.93 -0.41 0.84 16 10 N -0.52 -9.72 3.88 -226.69 -0.88 -10.59 16 11 C 0.05 0.98 4.18 -3.84 -0.02 0.96 16 12 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 13 C -0.11 -2.56 5.09 -26.61 -0.14 -2.70 16 14 C 0.06 1.42 2.13 -91.69 -0.20 1.23 16 15 H 0.04 1.10 8.12 -51.93 -0.42 0.68 16 16 C -0.51 -14.40 8.49 -34.44 -0.29 -14.69 16 17 H 0.05 1.44 7.76 -52.49 -0.41 1.03 16 18 C 0.06 1.82 5.26 -17.82 -0.09 1.73 16 19 N -0.89 -25.98 12.03 55.43 0.67 -25.31 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.07 1.44 4.47 -3.83 -0.02 1.42 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.25 7.77 -51.93 -0.40 0.85 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.36 3.11 9.05 45.56 0.41 3.52 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.94 7.19 -51.93 -0.37 0.57 16 36 H 0.08 1.17 6.00 -51.93 -0.31 0.86 16 37 H 0.02 0.33 6.60 -51.93 -0.34 -0.01 16 38 H 0.10 1.68 4.85 -51.93 -0.25 1.43 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.95 6.84 -51.93 -0.36 1.59 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.05 1.19 7.94 -51.93 -0.41 0.77 16 45 H 0.02 0.36 7.23 -51.93 -0.38 -0.02 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -29.16 327.01 -9.33 -38.49 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.41 Total: 2.77 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.32 Total: -19.90 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.21 Total: -35.91 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.29 Total: -6.99 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.16 -9.33 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703798984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.267 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds