Wall clock time and date at job start Mon Mar 30 2020 07:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47318 * 2 1 4 4 C 1.53002 * 109.47321 * 239.99470 * 2 1 3 5 5 C 1.52995 * 109.46987 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.47191 * 60.00564 * 5 4 2 7 7 C 1.53002 * 109.46695 * 299.99615 * 6 5 4 8 8 C 1.53000 * 109.47321 * 60.00190 * 7 6 5 9 9 H 1.09006 * 109.47278 * 59.99324 * 8 7 6 10 10 N 1.46898 * 109.47274 * 179.97438 * 8 7 6 11 11 C 1.46836 * 111.00188 * 45.68382 * 10 8 7 12 12 C 1.53036 * 109.52739 * 174.16264 * 11 10 8 13 13 C 1.53120 * 109.27704 * 59.17538 * 12 11 10 14 14 C 1.53121 * 109.16337 * 302.35111 * 13 12 11 15 15 H 1.09000 * 109.49849 * 297.67574 * 14 13 12 16 16 C 1.50700 * 109.50266 * 177.59698 * 14 13 12 17 17 H 1.07996 * 119.99479 * 245.34408 * 16 14 13 18 18 C 1.37874 * 120.00086 * 65.34484 * 16 14 13 19 19 N 1.31511 * 120.00486 * 6.49167 * 18 16 14 20 20 Si 1.86802 * 119.99694 * 186.48749 * 18 16 14 21 21 H 1.48494 * 109.47237 * 94.77251 * 20 18 16 22 22 H 1.48503 * 109.47134 * 214.77202 * 20 18 16 23 23 H 1.48494 * 109.47240 * 334.76923 * 20 18 16 24 24 C 1.46851 * 110.99599 * 281.46898 * 10 8 7 25 25 H 1.08999 * 109.47147 * 185.04807 * 1 2 3 26 26 H 1.09003 * 109.47295 * 305.04967 * 1 2 3 27 27 H 1.09002 * 109.47132 * 65.04820 * 1 2 3 28 28 H 0.96698 * 113.99996 * 299.99733 * 3 2 1 29 29 H 1.08997 * 109.47067 * 300.00154 * 4 2 1 30 30 H 1.09002 * 109.46849 * 60.00472 * 4 2 1 31 31 H 1.08998 * 109.47394 * 179.97438 * 5 4 2 32 32 H 1.08994 * 109.47907 * 300.00577 * 5 4 2 33 33 H 1.09001 * 109.47017 * 59.99175 * 6 5 4 34 34 H 1.09001 * 109.47435 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46849 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47534 * 300.00130 * 7 6 5 37 37 H 1.09000 * 109.46533 * 294.17720 * 11 10 8 38 38 H 1.08998 * 109.46389 * 54.15765 * 11 10 8 39 39 H 1.08997 * 109.50938 * 179.11966 * 12 11 10 40 40 H 1.08999 * 109.50062 * 299.20242 * 12 11 10 41 41 H 1.09002 * 109.52321 * 62.25915 * 13 12 11 42 42 H 1.08999 * 109.52450 * 182.44367 * 13 12 11 43 43 H 0.96995 * 120.00785 * 179.97438 * 19 18 16 44 44 H 1.08992 * 109.46599 * 305.85854 * 24 10 8 45 45 H 1.09004 * 109.45777 * 65.82936 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2494 6 6 4.0805 -1.4417 -0.0001 7 6 3.5705 -0.7203 1.2491 8 6 2.0405 -0.7208 1.2494 9 1 1.6775 -1.7487 1.2496 10 7 1.5508 -0.0288 2.4490 11 6 2.2779 1.2285 2.6649 12 6 1.6470 1.9902 3.8328 13 6 1.7055 1.1222 5.0929 14 6 0.9829 -0.2011 4.8257 15 1 -0.0668 -0.0047 4.6070 16 6 1.0867 -1.0854 6.0415 17 1 1.6400 -2.0114 5.9899 18 6 0.4751 -0.7124 7.2195 19 7 -0.3033 0.3472 7.2496 20 14 0.7523 -1.7121 8.7730 21 1 1.8552 -1.1062 9.5613 22 1 -0.4908 -1.7193 9.5853 23 1 1.1126 -3.1054 8.4072 24 6 1.6330 -0.8992 3.6290 25 1 -0.3633 -1.0237 0.0904 26 1 -0.3634 0.5902 0.8413 27 1 -0.3633 0.4335 -0.9318 28 1 1.7211 1.8653 -0.7651 29 1 1.6767 -1.7490 -1.2491 30 1 1.6768 -0.2075 -2.1392 31 1 3.9334 -1.2350 -2.1391 32 1 3.9331 0.3069 -1.2496 33 1 3.7175 -2.4694 0.0002 34 1 5.1705 -1.4417 -0.0005 35 1 3.9338 -1.2341 2.1391 36 1 3.9334 0.3075 1.2488 37 1 3.3207 1.0102 2.8948 38 1 2.2248 1.8382 1.7630 39 1 2.1966 2.9160 4.0028 40 1 0.6082 2.2216 3.5976 41 1 2.7459 0.9236 5.3504 42 1 1.2184 1.6433 5.9171 43 1 -0.7338 0.6094 8.0782 44 1 1.1117 -1.8348 3.4271 45 1 2.6789 -1.1075 3.8544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703798984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:20 Heat of formation + Delta-G solvation = -88.143109 kcal Electronic energy + Delta-G solvation = -22470.636658 eV Core-core repulsion = 19485.943901 eV Total energy + Delta-G solvation = -2984.692757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25828 -38.77732 -36.06439 -35.24780 -33.48038 -32.18400 -31.62692 -29.86897 -27.12538 -26.86189 -24.85563 -23.31179 -22.83469 -21.95190 -20.65452 -19.85112 -18.45737 -17.36314 -16.86636 -16.39444 -16.16664 -15.60933 -15.39960 -15.02281 -14.91383 -14.71484 -14.47680 -13.98635 -13.78027 -13.76340 -13.33677 -13.15196 -12.86998 -12.81753 -12.70853 -12.68599 -12.40983 -12.26923 -11.90883 -11.84574 -11.68904 -11.61698 -11.36545 -11.32281 -11.12999 -10.74899 -10.67935 -10.43004 -10.22172 -8.91470 -8.11495 -6.22189 1.39157 1.39946 1.50531 2.42027 3.14956 3.18097 3.41608 3.75272 3.91877 4.05003 4.21178 4.22635 4.34161 4.37324 4.41608 4.48760 4.56583 4.59246 4.66855 4.78095 4.83459 4.92204 4.94664 4.97068 5.03684 5.05756 5.08893 5.16785 5.22003 5.26705 5.28142 5.36677 5.42495 5.48192 5.52106 5.60115 5.62098 5.71078 5.97909 6.07109 6.23558 6.48348 6.52280 6.91467 7.11431 7.44880 8.96738 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.005159 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.756937 B = 5425.672590 C = 5681.354956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 O -0.558 6.558 4 C -0.137 4.137 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.143 4.143 8 C 0.095 3.905 9 H 0.076 0.924 10 N -0.529 5.529 11 C 0.063 3.937 12 C -0.111 4.111 13 C -0.097 4.097 14 C 0.056 3.944 15 H -0.001 1.001 16 C -0.537 4.537 17 H 0.049 0.951 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.268 1.268 24 C 0.082 3.918 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.381 0.619 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.013 0.987 38 H 0.119 0.881 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.022 0.978 42 H 0.039 0.961 43 H 0.260 0.740 44 H 0.050 0.950 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -0.160 -19.290 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.110 3.890 3 O -0.366 6.366 4 C -0.175 4.175 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.182 4.182 8 C -0.014 4.014 9 H 0.094 0.906 10 N -0.251 5.251 11 C -0.064 4.064 12 C -0.149 4.149 13 C -0.136 4.136 14 C 0.037 3.963 15 H 0.017 0.983 16 C -0.575 4.575 17 H 0.067 0.933 18 C -0.183 4.183 19 N -0.557 5.557 20 Si 0.778 3.222 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.192 1.192 24 C -0.046 4.046 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.231 0.769 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 5.768 -0.140 -18.684 19.555 hybrid contribution 0.432 -0.554 1.259 1.442 sum 6.200 -0.694 -17.425 18.508 Atomic orbital electron populations 1.22275 0.95605 1.02229 1.01991 1.21026 0.92367 0.82435 0.93155 1.86497 1.77241 1.23327 1.49579 1.22189 0.96451 1.01557 0.97306 1.21419 0.95070 1.01020 0.97130 1.21481 1.00391 0.99049 0.94132 1.22094 0.96722 1.01263 0.98117 1.21796 0.93093 0.96735 0.89780 0.90609 1.62087 1.55510 1.04965 1.02568 1.22354 0.93276 0.91394 0.99382 1.21605 1.00173 0.97805 0.95293 1.21405 0.97497 0.97884 0.96766 1.18540 0.93940 0.92532 0.91315 0.98298 1.21514 1.32670 1.06469 0.96887 0.93270 1.25715 0.94365 0.96368 1.01873 1.70092 1.30821 1.27249 1.27498 0.85636 0.77623 0.79286 0.79679 1.20226 1.20753 1.19199 1.21960 0.96853 0.95141 0.90651 0.92637 0.93279 0.90971 0.76882 0.91000 0.89493 0.90622 0.91643 0.92086 0.91695 0.94516 0.91429 0.96878 0.86405 0.91873 0.93463 0.95884 0.94234 0.93062 0.93166 0.97264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 8.58 71.98 0.62 -3.22 16 2 C 0.15 3.40 0.74 -10.79 -0.01 3.39 16 3 O -0.56 -12.17 8.32 -148.98 -1.24 -13.41 16 4 C -0.14 -2.26 4.92 30.59 0.15 -2.11 16 5 C -0.11 -1.82 5.78 30.60 0.18 -1.64 16 6 C -0.11 -2.33 5.92 30.60 0.18 -2.15 16 7 C -0.14 -3.97 4.13 30.59 0.13 -3.84 16 8 C 0.09 2.79 1.57 44.92 0.07 2.87 16 9 H 0.08 2.30 7.82 -2.38 -0.02 2.28 16 10 N -0.53 -19.80 3.88 -871.13 -3.38 -23.17 16 11 C 0.06 2.31 4.18 86.33 0.36 2.67 16 12 C -0.11 -4.60 6.09 30.65 0.19 -4.42 16 13 C -0.10 -4.92 5.09 30.67 0.16 -4.76 16 14 C 0.06 2.98 2.13 -11.49 -0.02 2.95 16 15 H 0.00 -0.07 8.12 -2.39 -0.02 -0.09 16 16 C -0.54 -31.05 8.49 25.60 0.22 -30.83 16 17 H 0.05 2.80 7.76 -2.91 -0.02 2.77 16 18 C 0.02 0.90 5.26 84.65 0.45 1.35 16 19 N -0.92 -55.44 12.03 21.45 0.26 -55.18 16 20 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.08 3.67 4.47 86.32 0.39 4.05 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.48 7.77 -2.39 -0.02 1.46 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.38 5.15 9.05 -74.06 -0.67 4.48 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.15 7.68 -2.39 -0.02 1.13 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 1.16 7.19 -2.39 -0.02 1.14 16 36 H 0.07 1.99 6.00 -2.39 -0.01 1.97 16 37 H 0.01 0.49 6.60 -2.39 -0.02 0.48 16 38 H 0.12 3.90 4.85 -2.39 -0.01 3.89 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 2.22 6.84 -2.39 -0.02 2.21 16 43 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.05 2.25 7.94 -2.39 -0.02 2.23 16 45 H 0.01 0.42 7.23 -2.39 -0.02 0.40 16 Total: -1.00 -65.13 327.01 0.99 -64.14 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.28 Total: 16.24 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.04 Total: -35.69 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -3.12 Total: -78.36 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.24 Total: -13.41 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.13 0.99 -64.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703798984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.003 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds