Wall clock time and date at job start Mon Mar 30 2020 07:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46917 * 2 1 4 4 C 1.53003 * 109.47240 * 240.00389 * 2 1 3 5 5 C 1.52995 * 109.47240 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47101 * 59.99920 * 5 4 2 7 7 C 1.53003 * 109.47164 * 299.99746 * 6 5 4 8 8 C 1.52993 * 109.47125 * 120.00301 * 2 1 3 9 9 H 1.08991 * 109.47510 * 59.99847 * 8 2 1 10 10 N 1.46899 * 109.46980 * 299.99881 * 8 2 1 11 11 C 1.46854 * 110.99979 * 161.48884 * 10 8 2 12 12 C 1.53043 * 109.52182 * 185.84171 * 11 10 8 13 13 C 1.53117 * 109.27552 * 300.81805 * 12 11 10 14 14 C 1.53117 * 109.16295 * 57.65594 * 13 12 11 15 15 H 1.08998 * 109.50170 * 62.29057 * 14 13 12 16 16 C 1.50699 * 109.53260 * 182.38359 * 14 13 12 17 17 H 1.08004 * 120.00153 * 119.82348 * 16 14 13 18 18 C 1.37874 * 120.00253 * 299.82188 * 16 14 13 19 19 N 1.31516 * 120.00073 * 0.02562 * 18 16 14 20 20 Si 1.86808 * 120.00102 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46684 * 59.99911 * 20 18 16 22 22 H 1.48494 * 109.46954 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46832 * 300.00260 * 20 18 16 24 24 C 1.46850 * 111.00127 * 285.69332 * 10 8 2 25 25 H 1.08998 * 109.47489 * 305.15439 * 1 2 3 26 26 H 1.09009 * 109.47304 * 65.15428 * 1 2 3 27 27 H 1.08999 * 109.47211 * 185.15173 * 1 2 3 28 28 H 0.96693 * 114.00284 * 300.00086 * 3 2 1 29 29 H 1.09004 * 109.46962 * 299.99857 * 4 2 1 30 30 H 1.08997 * 109.47420 * 59.99458 * 4 2 1 31 31 H 1.08996 * 109.47221 * 179.97438 * 5 4 2 32 32 H 1.09004 * 109.47027 * 299.99818 * 5 4 2 33 33 H 1.09000 * 109.46943 * 180.02562 * 6 5 4 34 34 H 1.08991 * 109.47528 * 59.99851 * 6 5 4 35 35 H 1.09004 * 109.47273 * 300.00291 * 7 6 5 36 36 H 1.08997 * 109.47453 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.45798 * 305.85120 * 11 10 8 38 38 H 1.08997 * 109.46172 * 65.82254 * 11 10 8 39 39 H 1.09001 * 109.49948 * 180.87730 * 12 11 10 40 40 H 1.09003 * 109.53434 * 60.77753 * 12 11 10 41 41 H 1.09004 * 109.52533 * 297.74975 * 13 12 11 42 42 H 1.09000 * 109.52268 * 177.56233 * 13 12 11 43 43 H 0.96999 * 119.99632 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.46707 * 294.17626 * 24 10 8 45 45 H 1.08998 * 109.46030 * 54.14959 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7217 -1.2490 6 6 4.0794 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2496 8 6 2.0399 -0.7213 1.2491 9 1 1.6766 -1.7489 1.2492 10 7 1.5503 -0.0288 2.4486 11 6 1.6323 -0.8988 3.6289 12 6 0.9821 -0.2002 4.8253 13 6 1.7050 1.1230 5.0921 14 6 1.6468 1.9906 3.8318 15 1 0.6078 2.2216 3.5968 16 6 2.4063 3.2709 4.0660 17 1 3.2545 3.5171 3.4444 18 6 2.0185 4.1281 5.0739 19 7 0.9859 3.8282 5.8312 20 14 2.9596 5.7156 5.3637 21 1 2.9052 6.5537 4.1391 22 1 2.3465 6.4546 6.4964 23 1 4.3746 5.4004 5.6854 24 6 2.2777 1.2285 2.6642 25 1 -0.3634 0.5917 0.8402 26 1 -0.3634 0.4318 -0.9326 27 1 -0.3633 -1.0235 0.0923 28 1 1.7209 1.8654 -0.7650 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.9333 -1.2359 -2.1387 32 1 3.9336 0.3058 -1.2487 33 1 5.1694 -1.4434 0.0007 34 1 3.7158 -2.4709 0.0000 35 1 3.9332 0.3054 1.2498 36 1 3.9320 -1.2366 2.1395 37 1 1.1107 -1.8344 3.4272 38 1 2.6781 -1.1073 3.8543 39 1 1.0570 -0.8397 5.7048 40 1 -0.0675 -0.0037 4.6064 41 1 2.7453 0.9242 5.3498 42 1 1.2180 1.6444 5.9161 43 1 0.7129 4.4314 6.5400 44 1 3.3205 1.0100 2.8943 45 1 2.2249 1.8379 1.7621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703798985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:22 Heat of formation + Delta-G solvation = -85.989711 kcal Electronic energy + Delta-G solvation = -22653.750227 eV Core-core repulsion = 19669.150849 eV Total energy + Delta-G solvation = -2984.599379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23257 -38.73997 -36.09341 -35.23182 -33.43272 -32.20356 -31.56275 -29.81161 -27.08278 -26.89958 -24.86808 -23.27545 -22.73473 -21.93697 -20.69437 -19.78086 -18.42817 -17.37343 -16.75484 -16.49266 -16.09499 -15.60624 -15.47462 -14.94488 -14.87402 -14.67957 -14.38099 -14.07803 -13.84724 -13.73239 -13.21804 -13.07112 -12.90460 -12.82375 -12.64499 -12.61715 -12.38895 -12.29707 -11.88798 -11.79158 -11.69049 -11.63722 -11.38844 -11.24307 -11.08468 -10.78639 -10.63365 -10.34759 -10.15398 -8.89652 -8.05653 -6.19070 1.39492 1.41475 1.49121 2.43630 3.17378 3.20468 3.45634 3.77222 3.95422 4.06659 4.19607 4.23758 4.30861 4.35729 4.44198 4.54835 4.56438 4.57587 4.69925 4.76079 4.87384 4.90474 4.98947 5.00158 5.04049 5.07027 5.13525 5.17372 5.25510 5.28493 5.30280 5.39680 5.41713 5.52445 5.56017 5.61069 5.65168 5.74583 6.03164 6.26196 6.29024 6.52028 6.57224 6.94559 7.12198 7.48074 8.98884 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.006067 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.559902 B = 4613.753199 C = 5009.557812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 O -0.563 6.563 4 C -0.134 4.134 5 C -0.113 4.113 6 C -0.109 4.109 7 C -0.145 4.145 8 C 0.097 3.903 9 H 0.096 0.904 10 N -0.531 5.531 11 C 0.062 3.938 12 C -0.108 4.108 13 C -0.104 4.104 14 C 0.055 3.945 15 H -0.010 1.010 16 C -0.532 4.532 17 H 0.045 0.955 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.273 1.273 24 C 0.081 3.919 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.375 0.625 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.019 0.981 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.015 0.985 42 H 0.055 0.945 43 H 0.259 0.741 44 H -0.003 1.003 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -12.492 -14.141 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.100 3.900 3 O -0.371 6.371 4 C -0.172 4.172 5 C -0.150 4.150 6 C -0.147 4.147 7 C -0.184 4.184 8 C -0.011 4.011 9 H 0.114 0.886 10 N -0.253 5.253 11 C -0.065 4.065 12 C -0.146 4.146 13 C -0.143 4.143 14 C 0.036 3.964 15 H 0.008 0.992 16 C -0.571 4.571 17 H 0.063 0.937 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.777 3.223 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.199 1.199 24 C -0.045 4.045 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.225 0.775 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.037 0.963 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.015 0.985 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.386 -12.508 -13.498 18.454 hybrid contribution 0.991 1.200 0.464 1.624 sum 2.377 -11.308 -13.034 17.418 Atomic orbital electron populations 1.22253 0.95368 1.02576 1.01643 1.21205 0.92712 0.82282 0.93810 1.86661 1.77260 1.23889 1.49251 1.22169 0.96147 1.01834 0.97045 1.21434 0.95423 1.00579 0.97561 1.21459 1.00197 0.99315 0.93738 1.22092 0.97283 1.00622 0.98420 1.21801 0.92694 0.97059 0.89576 0.88641 1.62125 1.55745 1.04673 1.02779 1.22052 0.97999 0.95795 0.90693 1.21557 0.99357 0.96567 0.97127 1.21467 0.96760 0.94938 1.01106 1.18579 0.94169 0.92297 0.91380 0.99155 1.21493 1.14204 1.05686 1.15691 0.93676 1.25712 0.95944 1.01079 0.95761 1.70038 1.27194 1.37871 1.20555 0.85715 0.78879 0.79921 0.77755 1.19627 1.20692 1.19877 1.22241 0.92333 0.90203 0.99769 0.93721 0.91647 0.91333 0.77539 0.89947 0.90126 0.90415 0.92860 0.92107 0.90879 0.93178 0.93692 0.89508 0.96260 0.91555 0.93150 0.96623 0.92669 0.93154 0.98489 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 8.58 71.98 0.62 -3.34 16 2 C 0.14 3.52 0.74 -10.80 -0.01 3.51 16 3 O -0.56 -16.69 8.33 -148.98 -1.24 -17.94 16 4 C -0.13 -2.40 4.92 30.59 0.15 -2.25 16 5 C -0.11 -2.13 5.78 30.59 0.18 -1.96 16 6 C -0.11 -2.32 5.92 30.60 0.18 -2.14 16 7 C -0.15 -4.21 4.14 30.58 0.13 -4.09 16 8 C 0.10 2.81 1.57 44.90 0.07 2.88 16 9 H 0.10 2.40 7.82 -2.39 -0.02 2.38 16 10 N -0.53 -19.69 3.88 -871.21 -3.38 -23.06 16 11 C 0.06 2.20 5.24 86.33 0.45 2.66 16 12 C -0.11 -4.41 6.09 30.65 0.19 -4.22 16 13 C -0.10 -5.35 5.03 30.67 0.15 -5.19 16 14 C 0.05 2.96 2.26 -11.49 -0.03 2.94 16 15 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 16 C -0.53 -31.38 8.56 25.60 0.22 -31.16 16 17 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 18 C 0.01 0.78 5.31 84.65 0.45 1.23 16 19 N -0.92 -55.51 11.36 21.45 0.24 -55.27 16 20 Si 0.95 45.65 29.54 68.60 2.03 47.68 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 24 C 0.08 3.71 3.40 86.33 0.29 4.00 16 25 H 0.04 1.44 7.77 -2.39 -0.02 1.42 16 26 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.38 8.26 9.04 -74.06 -0.67 7.59 16 29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.19 7.68 -2.38 -0.02 1.17 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.77 6.00 -2.38 -0.01 1.76 16 36 H 0.04 1.36 7.19 -2.39 -0.02 1.35 16 37 H 0.09 2.51 7.94 -2.39 -0.02 2.49 16 38 H 0.02 0.69 7.22 -2.39 -0.02 0.68 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.01 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.05 3.17 6.16 -2.39 -0.01 3.15 16 43 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.00 -0.15 6.60 -2.39 -0.02 -0.16 16 45 H 0.09 4.36 4.84 -2.39 -0.01 4.35 16 Total: -1.00 -66.72 325.85 0.98 -65.74 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.28 Total: 19.98 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 3.04 Total: -37.13 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -3.13 Total: -78.33 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.24 Total: -17.94 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -66.72 0.98 -65.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703798985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.249 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds