Wall clock time and date at job start Mon Mar 30 2020 07:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47245 * 2 1 4 4 C 1.53001 * 109.47117 * 239.99954 * 2 1 3 5 5 C 1.52997 * 109.47293 * 300.00123 * 4 2 1 6 6 C 1.53002 * 109.46967 * 299.99707 * 5 4 2 7 7 C 1.53001 * 109.46874 * 60.00037 * 6 5 4 8 8 C 1.52997 * 109.47293 * 299.99763 * 7 6 5 9 9 H 1.08997 * 109.47517 * 300.00080 * 8 7 6 10 10 N 1.46895 * 109.47305 * 180.02562 * 8 7 6 11 11 C 1.46850 * 111.00212 * 166.42552 * 10 8 7 12 12 C 1.53038 * 109.52525 * 174.15839 * 11 10 8 13 13 C 1.53122 * 109.27515 * 59.17900 * 12 11 10 14 14 C 1.53119 * 109.15630 * 302.34017 * 13 12 11 15 15 H 1.09005 * 109.50872 * 297.72731 * 14 13 12 16 16 C 1.50693 * 109.49665 * 177.60518 * 14 13 12 17 17 H 1.08004 * 120.00040 * 275.21766 * 16 14 13 18 18 C 1.37879 * 119.99787 * 95.21603 * 16 14 13 19 19 N 1.31522 * 119.99865 * 184.84355 * 18 16 14 20 20 Si 1.86797 * 120.00207 * 4.83796 * 18 16 14 21 21 H 1.48500 * 109.46950 * 84.86982 * 20 18 16 22 22 H 1.48496 * 109.47134 * 204.86657 * 20 18 16 23 23 H 1.48496 * 109.47177 * 324.86736 * 20 18 16 24 24 C 1.46850 * 111.00042 * 42.21467 * 10 8 7 25 25 H 1.09000 * 109.46933 * 299.99838 * 1 2 3 26 26 H 1.09000 * 109.46723 * 60.00041 * 1 2 3 27 27 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 28 28 H 0.96701 * 114.00125 * 300.00102 * 3 2 1 29 29 H 1.09008 * 109.47392 * 179.97438 * 4 2 1 30 30 H 1.09007 * 109.46966 * 60.00297 * 4 2 1 31 31 H 1.09000 * 109.47216 * 179.97438 * 5 4 2 32 32 H 1.09004 * 109.47141 * 60.00034 * 5 4 2 33 33 H 1.08991 * 109.47205 * 299.99994 * 6 5 4 34 34 H 1.09000 * 109.47188 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47320 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46999 * 59.99816 * 7 6 5 37 37 H 1.08993 * 109.46172 * 294.17720 * 11 10 8 38 38 H 1.09001 * 109.46129 * 54.15959 * 11 10 8 39 39 H 1.08992 * 109.50245 * 179.12031 * 12 11 10 40 40 H 1.09006 * 109.50356 * 299.24203 * 12 11 10 41 41 H 1.09005 * 109.52062 * 62.25417 * 13 12 11 42 42 H 1.09000 * 109.51954 * 182.37395 * 13 12 11 43 43 H 0.96998 * 120.00123 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46457 * 305.85562 * 24 10 8 45 45 H 1.08999 * 109.46005 * 65.83476 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1637 1.2492 8 6 2.0401 -0.7213 1.2492 9 1 3.1300 -0.7212 1.2492 10 7 1.5509 -0.0290 2.4489 11 6 2.2665 1.2367 2.6547 12 6 1.6352 1.9971 3.8232 13 6 1.7105 1.1353 5.0867 14 6 0.9996 -0.1963 4.8297 15 1 -0.0532 -0.0115 4.6159 16 6 1.1199 -1.0740 6.0487 17 1 1.9989 -1.6856 6.1892 18 6 0.1076 -1.0965 6.9846 19 7 0.2530 -1.7879 8.0939 20 14 -1.4700 -0.1447 6.6772 21 1 -2.3956 -0.9710 5.8613 22 1 -2.1121 0.1818 7.9757 23 1 -1.1565 1.1116 5.9502 24 6 1.6494 -0.8931 3.6321 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7210 1.8653 -0.7650 29 1 3.1301 -0.7209 -1.2495 30 1 1.6767 -0.2074 -2.1393 31 1 1.8930 -2.6774 -2.1395 32 1 0.4400 -2.1637 -1.2493 33 1 3.1300 -2.8850 -0.0001 34 1 1.6764 -3.9125 0.0002 35 1 1.8930 -2.6778 2.1392 36 1 0.4400 -2.1637 1.2492 37 1 3.3129 1.0300 2.8789 38 1 2.2015 1.8419 1.7505 39 1 2.1764 2.9291 3.9857 40 1 0.5924 2.2163 3.5938 41 1 2.7545 0.9484 5.3384 42 1 1.2243 1.6556 5.9119 43 1 -0.4593 -1.8040 8.7522 44 1 1.1364 -1.8350 3.4378 45 1 2.6988 -1.0897 3.8519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703798986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:25 Heat of formation + Delta-G solvation = -63.825070 kcal Electronic energy + Delta-G solvation = -22534.112766 eV Core-core repulsion = 19550.474518 eV Total energy + Delta-G solvation = -2983.638248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16525 -37.46124 -35.61142 -33.41319 -32.07582 -30.60233 -30.07741 -28.94217 -26.48469 -25.03594 -23.58125 -22.16532 -21.19634 -20.69117 -18.66783 -18.63973 -17.00190 -16.76090 -15.64635 -15.41052 -14.76186 -14.26833 -14.07923 -13.90007 -13.60671 -13.22233 -12.85309 -12.77018 -12.61094 -12.43768 -12.07512 -12.01545 -11.99157 -11.57161 -11.22095 -11.17135 -11.00897 -10.85829 -10.67141 -10.56654 -10.30276 -10.07648 -9.95006 -9.74406 -9.68628 -9.34532 -9.05041 -8.75677 -8.43819 -7.59705 -6.02107 -4.00602 3.35529 3.42975 3.48651 4.16127 4.34838 4.49369 4.66500 4.91605 4.92566 5.16473 5.23747 5.29922 5.30678 5.37047 5.47505 5.63619 5.72766 5.79210 5.84336 5.90540 5.93925 5.99783 6.00585 6.08639 6.11406 6.16436 6.26174 6.34907 6.42385 6.45892 6.48721 6.62413 6.65473 6.76668 6.88079 6.97040 7.07411 7.43422 7.58790 7.69378 7.76839 7.83841 8.00873 8.60344 9.03134 9.62389 11.11311 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.006107 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.822603 B = 4584.148002 C = 4992.315398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 O -0.550 6.550 4 C -0.142 4.142 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.124 4.124 8 C 0.104 3.896 9 H 0.038 0.962 10 N -0.531 5.531 11 C 0.053 3.947 12 C -0.119 4.119 13 C -0.113 4.113 14 C 0.022 3.978 15 H 0.037 0.963 16 C -0.510 4.510 17 H 0.070 0.930 18 C 0.071 3.929 19 N -0.904 5.904 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.263 1.263 24 C 0.065 3.935 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.362 0.638 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.015 0.985 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.262 0.738 44 H 0.072 0.928 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 2.929 -19.682 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.101 3.899 3 O -0.356 6.356 4 C -0.181 4.181 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.161 4.161 8 C -0.005 4.005 9 H 0.056 0.944 10 N -0.255 5.255 11 C -0.075 4.075 12 C -0.157 4.157 13 C -0.151 4.151 14 C 0.003 3.997 15 H 0.055 0.945 16 C -0.548 4.548 17 H 0.088 0.912 18 C -0.130 4.130 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.187 1.187 24 C -0.061 4.061 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.210 0.790 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.034 0.966 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.571 2.786 -18.999 19.266 hybrid contribution -0.194 0.401 -0.361 0.573 sum 1.377 3.187 -19.360 19.669 Atomic orbital electron populations 1.22421 0.95325 1.02715 1.02246 1.21188 0.93354 0.81607 0.93758 1.86615 1.77345 1.23520 1.48099 1.22229 1.01378 0.96576 0.97885 1.21558 1.01170 0.94913 0.97934 1.21570 1.00726 0.99051 0.94443 1.21864 1.02139 0.93976 0.98150 1.21419 0.96703 0.92542 0.89873 0.94425 1.62022 1.55727 1.04976 1.02754 1.22381 0.93924 0.91531 0.99621 1.21675 1.00401 0.97503 0.96088 1.21867 1.00464 0.97572 0.95174 1.19133 0.95523 0.92314 0.92764 0.94458 1.20993 1.05459 1.24831 1.03528 0.91236 1.25046 0.98371 0.94877 0.94720 1.69920 1.33513 1.42129 1.08629 0.86830 0.83917 0.81443 0.77179 1.20272 1.21913 1.18746 1.22385 0.98443 0.96000 0.89317 0.90178 0.93797 0.91569 0.79000 0.91591 0.91990 0.92169 0.91437 0.92145 0.91658 0.90371 0.90505 0.96632 0.88136 0.93340 0.92363 0.93481 0.93312 0.92785 0.91004 0.96250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 7.96 37.16 0.30 -1.77 16 2 C 0.14 1.74 0.91 -90.62 -0.08 1.66 16 3 O -0.55 -6.78 9.62 -35.23 -0.34 -7.11 16 4 C -0.14 -1.43 5.07 -26.73 -0.14 -1.57 16 5 C -0.12 -1.13 5.65 -26.73 -0.15 -1.28 16 6 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 7 C -0.12 -1.70 4.02 -26.73 -0.11 -1.81 16 8 C 0.10 1.56 1.61 -67.72 -0.11 1.45 16 9 H 0.04 0.61 8.03 -51.93 -0.42 0.19 16 10 N -0.53 -9.52 3.75 -226.69 -0.85 -10.37 16 11 C 0.05 0.94 5.18 -3.83 -0.02 0.92 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 13 C -0.11 -2.50 5.27 -26.61 -0.14 -2.64 16 14 C 0.02 0.53 1.92 -91.69 -0.18 0.35 16 15 H 0.04 0.93 5.30 -51.93 -0.27 0.66 16 16 C -0.51 -14.42 8.86 -34.44 -0.31 -14.72 16 17 H 0.07 2.14 8.06 -52.48 -0.42 1.71 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 20 Si 0.88 22.11 26.99 -169.99 -4.59 17.52 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.41 6.82 56.52 0.39 -6.03 16 24 C 0.07 1.37 3.99 -3.83 -0.02 1.35 16 25 H 0.08 1.19 7.60 -51.93 -0.39 0.79 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.79 4.81 -51.93 -0.25 0.54 16 28 H 0.36 3.03 9.05 45.56 0.41 3.44 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.18 6.25 -51.93 -0.32 0.86 16 36 H 0.08 1.08 6.43 -51.93 -0.33 0.75 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 1.68 4.80 -51.93 -0.25 1.43 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 1.49 5.83 -51.93 -0.30 1.19 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -30.61 321.88 -8.63 -39.24 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.12 Total: 2.92 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -1.36 Total: -19.94 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.08 Total: -37.49 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.34 Total: -7.11 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.59 Total: 17.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.61 -8.63 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703798986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.582 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds