Wall clock time and date at job start Mon Mar 30 2020 07:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47245 * 2 1 4 4 C 1.53001 * 109.47117 * 239.99954 * 2 1 3 5 5 C 1.52997 * 109.47293 * 300.00123 * 4 2 1 6 6 C 1.53002 * 109.46967 * 299.99707 * 5 4 2 7 7 C 1.53001 * 109.46874 * 60.00037 * 6 5 4 8 8 C 1.52997 * 109.47293 * 299.99763 * 7 6 5 9 9 H 1.08997 * 109.47517 * 300.00080 * 8 7 6 10 10 N 1.46895 * 109.47305 * 180.02562 * 8 7 6 11 11 C 1.46850 * 111.00212 * 166.42552 * 10 8 7 12 12 C 1.53038 * 109.52525 * 174.15839 * 11 10 8 13 13 C 1.53122 * 109.27515 * 59.17900 * 12 11 10 14 14 C 1.53119 * 109.15630 * 302.34017 * 13 12 11 15 15 H 1.09005 * 109.50872 * 297.72731 * 14 13 12 16 16 C 1.50693 * 109.49665 * 177.60518 * 14 13 12 17 17 H 1.08004 * 120.00040 * 275.21766 * 16 14 13 18 18 C 1.37879 * 119.99787 * 95.21603 * 16 14 13 19 19 N 1.31522 * 119.99865 * 184.84355 * 18 16 14 20 20 Si 1.86797 * 120.00207 * 4.83796 * 18 16 14 21 21 H 1.48500 * 109.46950 * 84.86982 * 20 18 16 22 22 H 1.48496 * 109.47134 * 204.86657 * 20 18 16 23 23 H 1.48496 * 109.47177 * 324.86736 * 20 18 16 24 24 C 1.46850 * 111.00042 * 42.21467 * 10 8 7 25 25 H 1.09000 * 109.46933 * 299.99838 * 1 2 3 26 26 H 1.09000 * 109.46723 * 60.00041 * 1 2 3 27 27 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 28 28 H 0.96701 * 114.00125 * 300.00102 * 3 2 1 29 29 H 1.09008 * 109.47392 * 179.97438 * 4 2 1 30 30 H 1.09007 * 109.46966 * 60.00297 * 4 2 1 31 31 H 1.09000 * 109.47216 * 179.97438 * 5 4 2 32 32 H 1.09004 * 109.47141 * 60.00034 * 5 4 2 33 33 H 1.08991 * 109.47205 * 299.99994 * 6 5 4 34 34 H 1.09000 * 109.47188 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47320 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46999 * 59.99816 * 7 6 5 37 37 H 1.08993 * 109.46172 * 294.17720 * 11 10 8 38 38 H 1.09001 * 109.46129 * 54.15959 * 11 10 8 39 39 H 1.08992 * 109.50245 * 179.12031 * 12 11 10 40 40 H 1.09006 * 109.50356 * 299.24203 * 12 11 10 41 41 H 1.09005 * 109.52062 * 62.25417 * 13 12 11 42 42 H 1.09000 * 109.51954 * 182.37395 * 13 12 11 43 43 H 0.96998 * 120.00123 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46457 * 305.85562 * 24 10 8 45 45 H 1.08999 * 109.46005 * 65.83476 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1637 1.2492 8 6 2.0401 -0.7213 1.2492 9 1 3.1300 -0.7212 1.2492 10 7 1.5509 -0.0290 2.4489 11 6 2.2665 1.2367 2.6547 12 6 1.6352 1.9971 3.8232 13 6 1.7105 1.1353 5.0867 14 6 0.9996 -0.1963 4.8297 15 1 -0.0532 -0.0115 4.6159 16 6 1.1199 -1.0740 6.0487 17 1 1.9989 -1.6856 6.1892 18 6 0.1076 -1.0965 6.9846 19 7 0.2530 -1.7879 8.0939 20 14 -1.4700 -0.1447 6.6772 21 1 -2.3956 -0.9710 5.8613 22 1 -2.1121 0.1818 7.9757 23 1 -1.1565 1.1116 5.9502 24 6 1.6494 -0.8931 3.6321 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7210 1.8653 -0.7650 29 1 3.1301 -0.7209 -1.2495 30 1 1.6767 -0.2074 -2.1393 31 1 1.8930 -2.6774 -2.1395 32 1 0.4400 -2.1637 -1.2493 33 1 3.1300 -2.8850 -0.0001 34 1 1.6764 -3.9125 0.0002 35 1 1.8930 -2.6778 2.1392 36 1 0.4400 -2.1637 1.2492 37 1 3.3129 1.0300 2.8789 38 1 2.2015 1.8419 1.7505 39 1 2.1764 2.9291 3.9857 40 1 0.5924 2.2163 3.5938 41 1 2.7545 0.9484 5.3384 42 1 1.2243 1.6556 5.9119 43 1 -0.4593 -1.8040 8.7522 44 1 1.1364 -1.8350 3.4378 45 1 2.6988 -1.0897 3.8519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703798986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:25 Heat of formation + Delta-G solvation = -84.535028 kcal Electronic energy + Delta-G solvation = -22535.010817 eV Core-core repulsion = 19550.474518 eV Total energy + Delta-G solvation = -2984.536299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30013 -38.92677 -36.55772 -35.23563 -33.81364 -32.06764 -31.37137 -30.08864 -27.54477 -26.98999 -24.97227 -23.47197 -22.40328 -22.10645 -20.41851 -19.69867 -18.95688 -17.97186 -16.92093 -16.62852 -16.11782 -15.68646 -15.56097 -15.33198 -14.70975 -14.62502 -14.35143 -14.29123 -14.24716 -13.82622 -13.48376 -13.15561 -13.02119 -12.93505 -12.76156 -12.59126 -12.22095 -12.21755 -12.11952 -11.81956 -11.70202 -11.60394 -11.42915 -11.25696 -11.04270 -10.94628 -10.78210 -10.60409 -10.29630 -9.09398 -8.29359 -6.32602 1.35164 1.36070 1.48889 2.35901 2.97675 3.10521 3.27379 3.72161 3.97027 3.98379 4.17289 4.19846 4.26498 4.29687 4.34054 4.40072 4.41829 4.48839 4.55681 4.74840 4.77073 4.84865 4.91331 4.92610 4.96423 4.98166 5.08191 5.09251 5.17951 5.21663 5.24410 5.25870 5.26127 5.37767 5.43275 5.52831 5.58916 5.66404 5.69661 5.76206 6.21873 6.37423 6.43587 6.75334 7.04904 7.33596 8.87790 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.006107 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.822603 B = 4584.148002 C = 4992.315398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 O -0.566 6.566 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.123 4.123 8 C 0.099 3.901 9 H 0.023 0.977 10 N -0.529 5.529 11 C 0.055 3.945 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.022 3.978 15 H 0.035 0.965 16 C -0.515 4.515 17 H 0.026 0.974 18 C 0.014 3.986 19 N -0.951 5.951 20 Si 0.944 3.056 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.248 1.248 24 C 0.078 3.922 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.384 0.616 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.004 0.996 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.265 0.735 44 H 0.068 0.932 45 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 4.408 -23.063 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.107 3.893 3 O -0.375 6.375 4 C -0.174 4.174 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.010 4.010 9 H 0.041 0.959 10 N -0.253 5.253 11 C -0.072 4.072 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.002 3.998 15 H 0.053 0.947 16 C -0.553 4.553 17 H 0.044 0.956 18 C -0.182 4.182 19 N -0.591 5.591 20 Si 0.768 3.232 21 H -0.191 1.191 22 H -0.215 1.215 23 H -0.172 1.172 24 C -0.049 4.049 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.235 0.765 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.022 0.978 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 0.449 4.277 -22.419 22.828 hybrid contribution 0.267 -0.105 0.704 0.761 sum 0.716 4.172 -21.714 22.123 Atomic orbital electron populations 1.22371 0.94970 1.02784 1.02173 1.21063 0.93405 0.81809 0.93063 1.86482 1.77594 1.23670 1.49765 1.22174 1.01080 0.96732 0.97388 1.21563 1.01487 0.94579 0.97631 1.21553 1.00641 0.99473 0.93749 1.21824 1.01840 0.93492 0.98873 1.21595 0.95944 0.93541 0.89897 0.95895 1.62031 1.56111 1.04767 1.02344 1.22440 0.93033 0.91541 1.00191 1.21620 1.01126 0.97866 0.94224 1.21760 0.99185 0.97109 0.96900 1.19082 0.95884 0.92731 0.92070 0.94705 1.21241 1.03928 1.24739 1.05405 0.95564 1.25904 1.02031 0.96050 0.94264 1.70064 1.34917 1.44232 1.09882 0.85779 0.79405 0.80566 0.77439 1.19084 1.21452 1.17191 1.22060 0.96746 0.96211 0.89925 0.92932 0.91126 0.91480 0.76541 0.92074 0.89398 0.90099 0.90903 0.92278 0.90640 0.92886 0.90807 0.97807 0.86024 0.90774 0.92082 0.94698 0.94402 0.92571 0.91344 0.98231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 7.96 71.98 0.57 -2.95 16 2 C 0.15 3.21 0.91 -10.79 -0.01 3.20 16 3 O -0.57 -12.07 9.62 -148.98 -1.43 -13.51 16 4 C -0.14 -2.21 5.07 30.59 0.16 -2.06 16 5 C -0.12 -1.79 5.65 30.59 0.17 -1.62 16 6 C -0.12 -2.32 5.92 30.60 0.18 -2.14 16 7 C -0.12 -3.33 4.02 30.59 0.12 -3.20 16 8 C 0.10 2.88 1.61 44.92 0.07 2.95 16 9 H 0.02 0.74 8.03 -2.39 -0.02 0.72 16 10 N -0.53 -18.72 3.75 -871.12 -3.27 -21.99 16 11 C 0.05 1.89 5.18 86.33 0.45 2.33 16 12 C -0.11 -3.96 6.09 30.65 0.19 -3.77 16 13 C -0.11 -4.96 5.27 30.67 0.16 -4.80 16 14 C 0.02 1.06 1.92 -11.49 -0.02 1.03 16 15 H 0.03 1.72 5.30 -2.38 -0.01 1.71 16 16 C -0.51 -30.40 8.86 25.60 0.23 -30.17 16 17 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 18 C 0.01 0.86 5.47 84.65 0.46 1.32 16 19 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 20 Si 0.94 45.89 26.99 68.60 1.85 47.74 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.25 -11.39 6.82 99.48 0.68 -10.71 16 24 C 0.08 3.37 3.99 86.33 0.34 3.72 16 25 H 0.05 1.43 7.60 -2.39 -0.02 1.41 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.41 4.81 -2.39 -0.01 1.40 16 28 H 0.38 4.78 9.05 -74.06 -0.67 4.11 16 29 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.09 6.43 -2.38 -0.02 1.08 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.67 6.25 -2.39 -0.01 1.65 16 36 H 0.07 2.03 6.43 -2.38 -0.02 2.02 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 38 H 0.12 3.74 4.80 -2.39 -0.01 3.73 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 44 H 0.07 2.96 5.83 -2.39 -0.01 2.95 16 45 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -68.54 321.88 0.79 -67.76 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.26 Total: 16.55 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 3.08 Total: -36.15 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.97 Total: -82.39 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.43 Total: -13.51 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.85 Total: 47.74 kcal Total: -68.54 0.79 -67.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703798986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.779 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds