Wall clock time and date at job start Mon Mar 30 2020 07:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 108.89927 * 2 1 4 4 C 1.54070 * 108.91987 * 118.65899 * 2 1 3 5 5 N 1.44270 * 111.97937 * 79.63823 * 4 2 1 6 6 C 1.47802 * 109.46309 * 96.43782 * 5 4 2 7 7 C 1.45862 * 112.91964 * 276.74092 * 6 5 4 8 8 C 1.54508 * 111.53638 * 61.36171 * 7 6 5 9 9 H 1.09005 * 109.57352 * 42.58440 * 8 7 6 10 10 O 1.42895 * 109.57694 * 162.96121 * 8 7 6 11 11 C 1.42898 * 114.00012 * 265.46422 * 10 8 7 12 12 C 1.53004 * 109.46954 * 184.96136 * 11 10 8 13 13 C 1.50697 * 115.55339 * 39.70214 * 12 11 10 14 14 H 1.08007 * 120.00029 * 264.68243 * 13 12 11 15 15 C 1.37875 * 119.99894 * 84.67845 * 13 12 11 16 16 N 1.31522 * 119.99772 * 184.80418 * 15 13 12 17 17 Si 1.86793 * 120.00145 * 4.80755 * 15 13 12 18 18 H 1.48499 * 109.47083 * 94.69748 * 17 15 13 19 19 H 1.48498 * 109.47304 * 214.69826 * 17 15 13 20 20 H 1.48502 * 109.46953 * 334.70054 * 17 15 13 21 21 C 1.53001 * 117.49398 * 253.99779 * 12 11 10 22 22 C 1.53003 * 117.49900 * 185.37544 * 12 11 10 23 23 C 1.50513 * 108.82263 * 282.71060 * 8 7 6 24 24 H 1.09004 * 109.47213 * 301.33789 * 1 2 3 25 25 H 1.08996 * 109.47323 * 61.34186 * 1 2 3 26 26 H 1.09005 * 109.46905 * 181.33824 * 1 2 3 27 27 H 1.08994 * 109.47215 * 178.65451 * 3 2 1 28 28 H 1.08993 * 109.47063 * 298.66319 * 3 2 1 29 29 H 1.09008 * 109.46893 * 58.66051 * 3 2 1 30 30 H 1.09002 * 108.97860 * 318.99759 * 4 2 1 31 31 H 1.08999 * 108.98074 * 200.28128 * 4 2 1 32 32 H 1.00898 * 111.00256 * 333.56568 * 5 4 2 33 33 H 1.08997 * 108.79336 * 155.85348 * 6 5 4 34 34 H 1.09007 * 108.79459 * 37.63033 * 6 5 4 35 35 H 1.09005 * 109.05465 * 181.86995 * 7 6 5 36 36 H 1.08995 * 109.05635 * 300.84875 * 7 6 5 37 37 H 1.09004 * 109.46998 * 304.95368 * 11 10 8 38 38 H 1.08995 * 109.47583 * 64.96201 * 11 10 8 39 39 H 0.96997 * 119.99533 * 179.97438 * 16 15 13 40 40 H 1.08993 * 117.50278 * 359.97438 * 21 12 11 41 41 H 1.09000 * 117.49683 * 145.02269 * 21 12 11 42 42 H 1.08991 * 117.49618 * 214.97421 * 22 12 11 43 43 H 1.09000 * 117.49496 * 359.97438 * 22 12 11 44 44 H 1.08997 * 108.80821 * 331.33707 * 23 8 7 45 45 H 1.09004 * 108.79432 * 213.13867 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0256 1.4475 0.0000 4 6 2.0295 -0.6990 1.2789 5 7 1.9770 -2.1362 1.1644 6 6 3.3046 -2.6471 0.7632 7 6 3.5271 -2.5813 -0.6768 8 6 3.4705 -1.1263 -1.1936 9 1 4.0055 -0.4729 -0.5043 10 8 4.0706 -1.0544 -2.4884 11 6 5.4506 -0.6839 -2.4697 12 6 5.9536 -0.5181 -3.9051 13 6 4.9922 0.1433 -4.8586 14 1 4.3513 -0.4601 -5.4845 15 6 4.9305 1.5187 -4.9318 16 7 4.0273 2.0969 -5.6932 17 14 6.1299 2.5610 -3.9497 18 1 7.2920 2.9153 -4.8036 19 1 5.4517 3.8021 -3.4971 20 1 6.5995 1.7942 -2.7679 21 6 6.8641 -1.6127 -4.4654 22 6 7.4459 -0.2446 -4.1036 23 6 2.0303 -0.6980 -1.2818 24 1 -0.3634 0.5345 0.8778 25 1 -0.3634 0.4928 -0.9017 26 1 -0.3633 -1.0274 0.0240 27 1 3.1152 1.4585 0.0241 28 1 1.6769 1.9509 -0.9017 29 1 1.6375 1.9644 0.8778 30 1 1.4086 -0.3874 2.1188 31 1 3.0591 -0.3960 1.4695 32 1 1.2663 -2.4209 0.5072 33 1 3.3935 -3.6847 1.0852 34 1 4.0734 -2.0591 1.2646 35 1 4.5063 -3.0022 -0.9052 36 1 2.7608 -3.1687 -1.1826 37 1 5.5668 0.2577 -1.9330 38 1 6.0287 -1.4609 -1.9696 39 1 3.9837 3.0645 -5.7443 40 1 7.1051 -2.4506 -3.8113 41 1 6.7677 -1.8546 -5.5238 42 1 7.7321 0.4134 -4.9240 43 1 8.0691 -0.1823 -3.2115 44 1 1.4129 -1.5771 -1.4663 45 1 1.9188 -0.0116 -2.1212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703802667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:07 Heat of formation + Delta-G solvation = -29.641284 kcal Electronic energy + Delta-G solvation = -22143.956010 eV Core-core repulsion = 19161.800082 eV Total energy + Delta-G solvation = -2982.155928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97071 -37.54554 -35.83916 -34.78841 -32.00810 -31.55445 -28.23197 -27.27424 -26.34837 -25.01656 -24.93226 -22.61167 -21.66671 -20.89876 -19.14448 -18.47069 -16.75193 -16.05173 -15.89916 -15.38022 -14.90346 -14.55012 -14.26089 -14.17711 -13.81865 -13.18047 -13.08390 -12.88915 -12.81916 -12.54337 -12.29244 -12.06553 -11.79753 -11.67228 -11.36274 -11.10930 -11.03160 -10.88001 -10.73236 -10.55764 -10.47997 -10.36180 -10.10408 -10.02426 -9.47290 -9.18726 -8.79873 -8.45898 -8.44129 -8.35819 -6.02682 -4.01852 3.29133 3.38687 3.41457 4.12243 4.35095 4.46655 4.71473 4.78448 4.85112 5.01758 5.05348 5.16490 5.25492 5.30518 5.49943 5.53228 5.61322 5.67628 5.75586 5.77025 5.83793 5.86477 5.93824 5.98695 6.01670 6.05701 6.07413 6.13813 6.19806 6.26905 6.31226 6.36629 6.40699 6.45786 6.52099 6.60122 6.70352 7.01054 7.02624 7.11618 7.36071 7.77594 8.09547 8.61102 9.02760 9.60695 11.09972 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.006639 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.813167 B = 4216.723333 C = 4954.351010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.142 4.142 4 C 0.062 3.938 5 N -0.672 5.672 6 C 0.053 3.947 7 C -0.174 4.174 8 C 0.089 3.911 9 H 0.053 0.947 10 O -0.343 6.343 11 C 0.102 3.898 12 C 0.002 3.998 13 C -0.464 4.464 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.900 5.900 17 Si 0.874 3.126 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.259 1.259 21 C -0.179 4.179 22 C -0.198 4.198 23 C -0.115 4.115 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.342 0.658 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 -5.542 13.867 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 C -0.200 4.200 4 C -0.069 4.069 5 N -0.301 5.301 6 C -0.076 4.076 7 C -0.213 4.213 8 C 0.030 3.970 9 H 0.071 0.929 10 O -0.261 6.261 11 C 0.025 3.975 12 C 0.002 3.998 13 C -0.501 4.501 14 H 0.096 0.904 15 C -0.125 4.125 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.183 1.183 21 C -0.216 4.216 22 C -0.235 4.235 23 C -0.153 4.153 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.755 -5.531 14.328 15.604 hybrid contribution 0.922 1.059 -0.337 1.444 sum -1.833 -4.472 13.991 14.802 Atomic orbital electron populations 1.21877 0.94232 1.01558 1.01867 1.21646 0.96093 0.96468 0.95288 1.21908 1.01139 0.95009 1.01907 1.22019 1.01207 0.87651 0.95988 1.61154 1.06137 1.10005 1.52804 1.20931 0.91274 1.01131 0.94227 1.21763 1.03441 0.98807 0.97283 1.21727 0.94320 0.94025 0.86883 0.92942 1.88159 1.24078 1.89275 1.24620 1.22241 0.81817 0.95951 0.97501 1.19340 0.88921 0.98832 0.92753 1.20125 1.19264 0.91047 1.19705 0.90443 1.24917 0.95120 0.97657 0.94794 1.69909 1.34015 1.09967 1.39923 0.86952 0.81510 0.79743 0.81582 1.20711 1.22155 1.18345 1.22879 1.06771 0.90987 1.01011 1.22973 0.98455 1.00182 1.01912 1.21596 0.94730 1.01200 0.97728 0.92637 0.92367 0.92774 0.92773 0.91999 0.92856 0.91179 0.91908 0.83961 0.91050 0.91707 0.91087 0.91338 0.94477 0.96003 0.92835 0.91051 0.89469 0.89299 0.91092 0.92058 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.14 37.16 0.30 -1.21 16 2 C -0.09 -1.16 0.52 -153.28 -0.08 -1.24 16 3 C -0.14 -1.87 8.14 37.16 0.30 -1.57 16 4 C 0.06 0.71 4.77 -4.67 -0.02 0.69 16 5 N -0.67 -7.64 6.91 -118.14 -0.82 -8.46 16 6 C 0.05 0.62 5.86 -6.71 -0.04 0.58 16 7 C -0.17 -2.37 5.03 -29.32 -0.15 -2.52 16 8 C 0.09 1.47 2.26 -27.18 -0.06 1.41 16 9 H 0.05 0.86 5.93 -51.93 -0.31 0.55 16 10 O -0.34 -7.39 9.27 -35.23 -0.33 -7.72 16 11 C 0.10 2.18 5.69 37.16 0.21 2.39 16 12 C 0.00 0.06 1.20 -155.66 -0.19 -0.13 16 13 C -0.46 -13.17 8.82 -34.44 -0.30 -13.47 16 14 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 16 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 17 Si 0.87 21.76 25.20 -169.99 -4.28 17.47 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.26 -6.05 5.23 56.52 0.30 -5.75 16 21 C -0.18 -3.72 9.88 -26.73 -0.26 -3.98 16 22 C -0.20 -4.23 7.34 -26.73 -0.20 -4.42 16 23 C -0.11 -1.76 3.81 -27.30 -0.10 -1.86 16 24 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.55 7.48 -51.93 -0.39 0.16 16 27 H 0.05 0.76 7.40 -51.93 -0.38 0.38 16 28 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 31 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 32 H 0.34 3.79 6.64 -39.29 -0.26 3.53 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.75 7.24 -51.93 -0.38 0.38 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.93 7.58 -51.93 -0.39 0.54 16 37 H 0.04 0.81 6.48 -51.93 -0.34 0.47 16 38 H 0.02 0.42 7.94 -51.93 -0.41 0.00 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.09 1.97 7.14 -51.93 -0.37 1.60 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.06 0.88 6.62 -51.93 -0.34 0.53 16 45 H 0.09 1.60 7.77 -51.93 -0.40 1.20 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -30.00 333.70 -8.49 -38.49 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.18 Total: 5.26 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -0.69 Total: -23.23 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.04 Total: -35.31 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.33 Total: -7.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.28 Total: 17.47 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.00 -8.49 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703802667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.853 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds