Wall clock time and date at job start Mon Mar 30 2020 07:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 108.89927 * 2 1 4 4 C 1.54070 * 108.91987 * 118.65899 * 2 1 3 5 5 N 1.44270 * 111.97937 * 79.63823 * 4 2 1 6 6 C 1.47802 * 109.46309 * 96.43782 * 5 4 2 7 7 C 1.45862 * 112.91964 * 276.74092 * 6 5 4 8 8 C 1.54508 * 111.53638 * 61.36171 * 7 6 5 9 9 H 1.09005 * 109.57352 * 42.58440 * 8 7 6 10 10 O 1.42895 * 109.57694 * 162.96121 * 8 7 6 11 11 C 1.42898 * 114.00012 * 265.46422 * 10 8 7 12 12 C 1.53004 * 109.46954 * 184.96136 * 11 10 8 13 13 C 1.50697 * 115.55339 * 39.70214 * 12 11 10 14 14 H 1.08007 * 120.00029 * 264.68243 * 13 12 11 15 15 C 1.37875 * 119.99894 * 84.67845 * 13 12 11 16 16 N 1.31522 * 119.99772 * 184.80418 * 15 13 12 17 17 Si 1.86793 * 120.00145 * 4.80755 * 15 13 12 18 18 H 1.48499 * 109.47083 * 94.69748 * 17 15 13 19 19 H 1.48498 * 109.47304 * 214.69826 * 17 15 13 20 20 H 1.48502 * 109.46953 * 334.70054 * 17 15 13 21 21 C 1.53001 * 117.49398 * 253.99779 * 12 11 10 22 22 C 1.53003 * 117.49900 * 185.37544 * 12 11 10 23 23 C 1.50513 * 108.82263 * 282.71060 * 8 7 6 24 24 H 1.09004 * 109.47213 * 301.33789 * 1 2 3 25 25 H 1.08996 * 109.47323 * 61.34186 * 1 2 3 26 26 H 1.09005 * 109.46905 * 181.33824 * 1 2 3 27 27 H 1.08994 * 109.47215 * 178.65451 * 3 2 1 28 28 H 1.08993 * 109.47063 * 298.66319 * 3 2 1 29 29 H 1.09008 * 109.46893 * 58.66051 * 3 2 1 30 30 H 1.09002 * 108.97860 * 318.99759 * 4 2 1 31 31 H 1.08999 * 108.98074 * 200.28128 * 4 2 1 32 32 H 1.00898 * 111.00256 * 333.56568 * 5 4 2 33 33 H 1.08997 * 108.79336 * 155.85348 * 6 5 4 34 34 H 1.09007 * 108.79459 * 37.63033 * 6 5 4 35 35 H 1.09005 * 109.05465 * 181.86995 * 7 6 5 36 36 H 1.08995 * 109.05635 * 300.84875 * 7 6 5 37 37 H 1.09004 * 109.46998 * 304.95368 * 11 10 8 38 38 H 1.08995 * 109.47583 * 64.96201 * 11 10 8 39 39 H 0.96997 * 119.99533 * 179.97438 * 16 15 13 40 40 H 1.08993 * 117.50278 * 359.97438 * 21 12 11 41 41 H 1.09000 * 117.49683 * 145.02269 * 21 12 11 42 42 H 1.08991 * 117.49618 * 214.97421 * 22 12 11 43 43 H 1.09000 * 117.49496 * 359.97438 * 22 12 11 44 44 H 1.08997 * 108.80821 * 331.33707 * 23 8 7 45 45 H 1.09004 * 108.79432 * 213.13867 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0256 1.4475 0.0000 4 6 2.0295 -0.6990 1.2789 5 7 1.9770 -2.1362 1.1644 6 6 3.3046 -2.6471 0.7632 7 6 3.5271 -2.5813 -0.6768 8 6 3.4705 -1.1263 -1.1936 9 1 4.0055 -0.4729 -0.5043 10 8 4.0706 -1.0544 -2.4884 11 6 5.4506 -0.6839 -2.4697 12 6 5.9536 -0.5181 -3.9051 13 6 4.9922 0.1433 -4.8586 14 1 4.3513 -0.4601 -5.4845 15 6 4.9305 1.5187 -4.9318 16 7 4.0273 2.0969 -5.6932 17 14 6.1299 2.5610 -3.9497 18 1 7.2920 2.9153 -4.8036 19 1 5.4517 3.8021 -3.4971 20 1 6.5995 1.7942 -2.7679 21 6 6.8641 -1.6127 -4.4654 22 6 7.4459 -0.2446 -4.1036 23 6 2.0303 -0.6980 -1.2818 24 1 -0.3634 0.5345 0.8778 25 1 -0.3634 0.4928 -0.9017 26 1 -0.3633 -1.0274 0.0240 27 1 3.1152 1.4585 0.0241 28 1 1.6769 1.9509 -0.9017 29 1 1.6375 1.9644 0.8778 30 1 1.4086 -0.3874 2.1188 31 1 3.0591 -0.3960 1.4695 32 1 1.2663 -2.4209 0.5072 33 1 3.3935 -3.6847 1.0852 34 1 4.0734 -2.0591 1.2646 35 1 4.5063 -3.0022 -0.9052 36 1 2.7608 -3.1687 -1.1826 37 1 5.5668 0.2577 -1.9330 38 1 6.0287 -1.4609 -1.9696 39 1 3.9837 3.0645 -5.7443 40 1 7.1051 -2.4506 -3.8113 41 1 6.7677 -1.8546 -5.5238 42 1 7.7321 0.4134 -4.9240 43 1 8.0691 -0.1823 -3.2115 44 1 1.4129 -1.5771 -1.4663 45 1 1.9188 -0.0116 -2.1212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703802667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:06 Heat of formation + Delta-G solvation = -49.859378 kcal Electronic energy + Delta-G solvation = -22144.832732 eV Core-core repulsion = 19161.800082 eV Total energy + Delta-G solvation = -2983.032650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09869 -39.15857 -37.38571 -35.79790 -34.21386 -32.74623 -29.38199 -28.25716 -28.17906 -26.86942 -26.01250 -23.71438 -23.32142 -22.01892 -20.98309 -19.65482 -18.51359 -17.59857 -17.06282 -16.94849 -16.33757 -15.90446 -15.71546 -15.32595 -15.22162 -14.77270 -14.52500 -14.27223 -14.02215 -13.96897 -13.55929 -13.26699 -13.08279 -12.90915 -12.84059 -12.76598 -12.38669 -12.23203 -12.03534 -11.98285 -11.83708 -11.73663 -11.55801 -11.34930 -11.24373 -11.02364 -10.60613 -10.41417 -10.06753 -9.37134 -8.26450 -6.30148 1.31441 1.32799 1.45360 2.36497 2.70257 3.09091 3.25756 3.42257 3.64503 3.69745 3.83445 3.96328 4.08248 4.18966 4.26088 4.28836 4.33520 4.38785 4.45597 4.51465 4.62260 4.68081 4.73178 4.77005 4.81919 4.83772 4.90153 4.91092 5.02573 5.03187 5.06292 5.07282 5.14728 5.21905 5.29474 5.30967 5.38784 5.40471 5.45679 5.71596 6.09429 6.31055 6.46200 6.59946 6.78952 7.36054 8.90467 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.006639 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.813167 B = 4216.723333 C = 4954.351010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.068 3.932 5 N -0.669 5.669 6 C 0.057 3.943 7 C -0.161 4.161 8 C 0.083 3.917 9 H 0.055 0.945 10 O -0.382 6.382 11 C 0.109 3.891 12 C -0.036 4.036 13 C -0.463 4.463 14 H 0.021 0.979 15 C 0.017 3.983 16 N -0.954 5.954 17 Si 0.936 3.064 18 H -0.270 1.270 19 H -0.299 1.299 20 H -0.228 1.228 21 C -0.164 4.164 22 C -0.185 4.185 23 C -0.110 4.110 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.344 0.656 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.055 0.945 39 H 0.262 0.738 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -6.535 17.240 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.200 4.200 4 C -0.063 4.063 5 N -0.298 5.298 6 C -0.072 4.072 7 C -0.200 4.200 8 C 0.025 3.975 9 H 0.073 0.927 10 O -0.301 6.301 11 C 0.032 3.968 12 C -0.036 4.036 13 C -0.501 4.501 14 H 0.039 0.961 15 C -0.179 4.179 16 N -0.594 5.594 17 Si 0.760 3.240 18 H -0.196 1.196 19 H -0.227 1.227 20 H -0.151 1.151 21 C -0.201 4.201 22 C -0.222 4.222 23 C -0.148 4.148 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.195 -6.556 17.713 18.925 hybrid contribution 0.339 1.287 -1.489 1.997 sum -0.855 -5.270 16.224 17.080 Atomic orbital electron populations 1.21862 0.92937 1.02417 1.02059 1.21614 0.97077 0.95656 0.94463 1.21913 1.00439 0.95737 1.01902 1.22000 1.01371 0.87582 0.95308 1.61208 1.06113 1.09764 1.52667 1.20939 0.91488 1.02341 0.92477 1.21669 1.03416 0.96238 0.98692 1.21992 0.94184 0.96257 0.85059 0.92658 1.88117 1.24578 1.89547 1.27865 1.22117 0.82219 0.96763 0.95679 1.19348 0.89401 1.01510 0.93389 1.20243 1.19226 0.90951 1.19706 0.96070 1.25795 0.96980 0.99072 0.96070 1.70077 1.36584 1.10253 1.42517 0.85949 0.79142 0.77700 0.81165 1.19589 1.22673 1.15100 1.22932 1.04383 0.91741 1.01037 1.23020 0.96394 0.99995 1.02806 1.21586 0.94789 1.00526 0.97902 0.90737 0.93810 0.91687 0.93899 0.94390 0.90299 0.89531 0.92080 0.83726 0.89280 0.91210 0.91052 0.91644 0.95144 0.92711 0.92910 0.87522 0.90633 0.90530 0.87570 0.91492 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.14 71.98 0.59 -2.19 16 2 C -0.09 -2.06 0.52 -51.38 -0.03 -2.09 16 3 C -0.14 -3.69 8.14 71.98 0.59 -3.11 16 4 C 0.07 1.36 4.77 87.16 0.42 1.78 16 5 N -0.67 -13.19 6.91 -527.69 -3.65 -16.84 16 6 C 0.06 1.13 5.86 83.94 0.49 1.63 16 7 C -0.16 -4.08 5.03 28.92 0.15 -3.93 16 8 C 0.08 2.69 2.26 30.30 0.07 2.76 16 9 H 0.06 1.75 5.93 -2.38 -0.01 1.73 16 10 O -0.38 -16.62 9.27 -148.98 -1.38 -18.00 16 11 C 0.11 4.48 5.69 71.98 0.41 4.89 16 12 C -0.04 -1.66 1.20 -52.93 -0.06 -1.72 16 13 C -0.46 -27.42 8.82 25.60 0.23 -27.19 16 14 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 15 C 0.02 1.01 5.47 84.65 0.46 1.47 16 16 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 17 Si 0.94 45.11 25.20 68.60 1.73 46.84 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 20 H -0.23 -9.78 5.23 99.48 0.52 -9.26 16 21 C -0.16 -6.44 9.88 30.60 0.30 -6.14 16 22 C -0.19 -7.35 7.34 30.60 0.22 -7.13 16 23 C -0.11 -3.45 3.81 30.23 0.12 -3.33 16 24 H 0.07 1.26 8.12 -2.38 -0.02 1.24 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.19 7.48 -2.38 -0.02 1.17 16 27 H 0.04 1.19 7.40 -2.39 -0.02 1.17 16 28 H 0.04 1.14 8.06 -2.39 -0.02 1.12 16 29 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.09 1.52 7.96 -2.39 -0.02 1.50 16 31 H 0.06 1.28 6.32 -2.39 -0.02 1.26 16 32 H 0.34 6.72 6.64 -89.70 -0.60 6.12 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.37 7.24 -2.38 -0.02 1.35 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 37 H 0.03 1.26 6.48 -2.39 -0.02 1.25 16 38 H 0.05 1.88 7.94 -2.39 -0.02 1.86 16 39 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.11 3.44 8.08 -2.39 -0.02 3.42 16 41 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.08 3.23 7.14 -2.39 -0.02 3.21 16 43 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.07 1.95 6.62 -2.39 -0.02 1.93 16 45 H 0.04 1.62 7.77 -2.38 -0.02 1.60 16 Total: -1.00 -69.03 333.70 1.11 -67.92 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.16 Total: 25.73 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 3.94 Total: -44.30 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -3.35 Total: -78.19 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.38 Total: -18.00 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.73 Total: 46.84 kcal Total: -69.03 1.11 -67.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703802667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.058 kcal (2) G-P(sol) polarization free energy of solvation -69.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds