Wall clock time and date at job start Mon Mar 30 2020 07:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 108.98281 * 2 1 4 4 C 1.50825 * 109.05118 * 241.05740 * 2 1 3 5 5 N 1.47634 * 108.03515 * 334.50860 * 4 2 1 6 6 C 1.39784 * 114.77047 * 277.19237 * 5 4 2 7 7 C 1.54428 * 111.76781 * 62.27233 * 6 5 4 8 8 C 1.50748 * 109.03156 * 282.61114 * 7 6 5 9 9 H 1.09000 * 108.85360 * 332.20236 * 8 7 6 10 10 O 1.42907 * 108.77492 * 213.76135 * 8 7 6 11 11 C 1.42902 * 113.99778 * 88.45480 * 10 8 7 12 12 C 1.53004 * 109.46909 * 180.02562 * 11 10 8 13 13 C 1.50706 * 115.54535 * 65.07280 * 12 11 10 14 14 H 1.07995 * 120.00101 * 267.39619 * 13 12 11 15 15 C 1.37884 * 119.99811 * 87.40189 * 13 12 11 16 16 N 1.31510 * 119.99854 * 351.64797 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 171.64391 * 15 13 12 18 18 H 1.48501 * 109.47048 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47236 * 119.99577 * 17 15 13 20 20 H 1.48499 * 109.47264 * 240.00258 * 17 15 13 21 21 C 1.52999 * 117.50192 * 279.40355 * 12 11 10 22 22 C 1.52993 * 117.49993 * 210.74131 * 12 11 10 23 23 C 1.53815 * 109.05088 * 118.94597 * 2 1 3 24 24 H 1.08998 * 109.47142 * 284.27005 * 1 2 3 25 25 H 1.09000 * 109.46683 * 44.26798 * 1 2 3 26 26 H 1.08997 * 109.47303 * 164.27134 * 1 2 3 27 27 H 1.08997 * 109.46954 * 178.94601 * 3 2 1 28 28 H 1.08999 * 109.46811 * 298.93871 * 3 2 1 29 29 H 1.08996 * 109.47541 * 58.94372 * 3 2 1 30 30 H 1.08994 * 109.75299 * 94.14451 * 4 2 1 31 31 H 1.08997 * 109.74662 * 214.82996 * 4 2 1 32 32 H 1.00902 * 110.99746 * 44.04698 * 5 4 2 33 33 H 1.08997 * 109.02262 * 182.86683 * 6 5 4 34 34 H 1.09004 * 109.01726 * 301.76842 * 6 5 4 35 35 H 1.09000 * 109.54452 * 162.74482 * 7 6 5 36 36 H 1.09004 * 109.54640 * 42.47844 * 7 6 5 37 37 H 1.09001 * 109.47579 * 300.00457 * 11 10 8 38 38 H 1.09002 * 109.46681 * 60.00523 * 11 10 8 39 39 H 0.97001 * 120.00332 * 180.02562 * 16 15 13 40 40 H 1.09000 * 117.49565 * 0.02562 * 21 12 11 41 41 H 1.09001 * 117.49785 * 145.01691 * 21 12 11 42 42 H 1.09001 * 117.50148 * 214.97830 * 22 12 11 43 43 H 1.09006 * 117.49793 * 359.97438 * 22 12 11 44 44 H 1.09006 * 108.97630 * 318.94004 * 23 2 1 45 45 H 1.09001 * 108.97854 * 200.23618 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0277 1.4468 0.0000 4 6 2.0223 -0.6899 -1.2476 5 7 0.9738 -1.6279 -1.6952 6 6 0.9788 -2.8655 -1.0454 7 6 0.7156 -2.7181 0.4691 8 6 1.9761 -2.2388 1.1428 9 1 2.8354 -2.5749 0.5623 10 8 2.0476 -2.8153 2.4485 11 6 2.6950 -4.0887 2.4869 12 6 2.7135 -4.6081 3.9260 13 6 1.3643 -4.9128 4.5243 14 1 0.8423 -4.1569 5.0922 15 6 0.7964 -6.1566 4.3468 16 7 1.3492 -7.0203 3.5234 17 14 -0.7579 -6.6149 5.2758 18 1 -1.1769 -5.4760 6.1318 19 1 -1.8389 -6.9295 4.3075 20 1 -0.4940 -7.8032 6.1265 21 6 3.7936 -4.0604 4.8610 22 6 3.8875 -5.4971 4.3411 23 6 2.0321 -0.7037 1.2723 24 1 -0.3633 0.2533 0.9959 25 1 -0.3633 0.7359 -0.7173 26 1 -0.3634 -0.9891 -0.2786 27 1 3.1174 1.4561 0.0189 28 1 1.6756 1.9521 -0.8994 29 1 1.6446 1.9629 0.8803 30 1 2.2126 0.0486 -2.0262 31 1 2.9385 -1.2381 -1.0281 32 1 0.0615 -1.1991 -1.6493 33 1 0.2053 -3.4983 -1.4805 34 1 1.9494 -3.3395 -1.1917 35 1 0.4245 -3.6830 0.8842 36 1 -0.0828 -1.9940 0.6318 37 1 2.1527 -4.7914 1.8543 38 1 3.7178 -3.9873 2.1237 39 1 0.9495 -7.8953 3.3982 40 1 4.4908 -3.3296 4.4510 41 1 3.5285 -3.9207 5.9090 42 1 3.6842 -6.3020 5.0474 43 1 4.6465 -5.7122 3.5889 44 1 1.4131 -0.3961 2.1152 45 1 3.0619 -0.4011 1.4618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703802668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:09 Heat of formation + Delta-G solvation = -3.910007 kcal Electronic energy + Delta-G solvation = -21969.563655 eV Core-core repulsion = 18988.523520 eV Total energy + Delta-G solvation = -2981.040136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48951 -37.37393 -35.60127 -34.49382 -31.88538 -31.17363 -28.22206 -27.44793 -26.08542 -25.36466 -24.89967 -22.60339 -21.05311 -20.46895 -19.15014 -18.44554 -16.77635 -16.26287 -16.07275 -15.17844 -14.77413 -14.52220 -14.20741 -13.90840 -13.74788 -13.70882 -12.90448 -12.65416 -12.54741 -12.36554 -12.10932 -11.90415 -11.76064 -11.50447 -11.14111 -11.02519 -10.97196 -10.82597 -10.67754 -10.53393 -10.35920 -10.22473 -10.17110 -9.76088 -9.43769 -8.96257 -8.52727 -8.37330 -8.13765 -8.05663 -6.00314 -4.02389 3.30281 3.38582 3.43947 4.21883 4.44082 4.47926 4.67440 4.78286 4.87338 5.16723 5.27712 5.31412 5.42392 5.43102 5.49747 5.54958 5.58971 5.61762 5.68009 5.75626 5.83926 5.90722 5.99845 6.05399 6.08170 6.16674 6.20477 6.34203 6.35618 6.37824 6.44272 6.52347 6.68103 6.76875 6.79706 6.85909 7.11478 7.29459 7.48439 7.55327 7.56715 7.93790 8.25164 8.52998 8.98545 9.61630 11.09419 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.005350 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.175803 B = 5232.122260 C = 5649.949489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.137 4.137 4 C 0.074 3.926 5 N -0.707 5.707 6 C 0.073 3.927 7 C -0.205 4.205 8 C 0.095 3.905 9 H 0.042 0.958 10 O -0.370 6.370 11 C 0.111 3.889 12 C 0.044 3.956 13 C -0.479 4.479 14 H 0.060 0.940 15 C 0.068 3.932 16 N -0.884 5.884 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.207 4.207 22 C -0.152 4.152 23 C -0.103 4.103 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.349 0.651 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.010 0.990 39 H 0.258 0.742 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 12.278 -9.450 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.095 4.095 3 C -0.195 4.195 4 C -0.055 4.055 5 N -0.341 5.341 6 C -0.058 4.058 7 C -0.245 4.245 8 C 0.036 3.964 9 H 0.060 0.940 10 O -0.289 6.289 11 C 0.035 3.965 12 C 0.044 3.956 13 C -0.517 4.517 14 H 0.079 0.921 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.715 3.285 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.244 4.244 22 C -0.189 4.189 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.811 11.927 -9.851 15.491 hybrid contribution -1.001 -0.349 1.166 1.576 sum -0.190 11.578 -8.685 14.475 Atomic orbital electron populations 1.22681 0.95148 1.02788 1.02450 1.20920 0.96069 0.96040 0.96432 1.21906 1.00995 0.95005 1.01618 1.21829 0.94849 0.94599 0.94209 1.57787 1.09452 1.05594 1.61231 1.20921 1.02340 0.91299 0.91269 1.23259 0.99901 1.03929 0.97369 1.21754 0.96027 0.92524 0.86076 0.93981 1.87996 1.79754 1.35066 1.26058 1.22174 0.92103 0.83247 0.98972 1.18752 0.90613 0.96942 0.89295 1.20415 1.01281 0.97494 1.32535 0.92136 1.24968 0.97053 0.96509 0.94880 1.70025 1.40268 1.06994 1.34827 0.86604 0.83373 0.78442 0.80033 1.19704 1.21128 1.21012 1.22966 1.05127 0.96407 0.99918 1.22506 1.01228 0.92564 1.02629 1.22008 1.01517 0.93706 0.96842 0.92086 0.92679 0.89793 0.92599 0.92628 0.92684 0.90752 0.90979 0.82546 0.91110 0.91633 0.89979 0.89785 0.92959 0.97166 0.93223 0.91782 0.90457 0.89804 0.91995 0.91039 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 6.47 37.16 0.24 -1.60 16 2 C -0.09 -1.03 0.73 -155.18 -0.11 -1.14 16 3 C -0.14 -1.29 8.02 37.16 0.30 -0.99 16 4 C 0.07 0.82 5.70 -4.51 -0.03 0.79 16 5 N -0.71 -8.29 6.32 -118.54 -0.75 -9.04 16 6 C 0.07 0.98 5.91 -6.74 -0.04 0.94 16 7 C -0.21 -3.26 5.19 -27.11 -0.14 -3.40 16 8 C 0.09 1.61 2.13 -27.25 -0.06 1.56 16 9 H 0.04 0.72 6.18 -51.93 -0.32 0.39 16 10 O -0.37 -8.15 9.78 -35.23 -0.34 -8.50 16 11 C 0.11 2.62 5.45 37.16 0.20 2.82 16 12 C 0.04 1.14 1.63 -155.66 -0.25 0.88 16 13 C -0.48 -13.47 8.77 -34.43 -0.30 -13.77 16 14 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 15 C 0.07 1.89 5.36 -17.82 -0.10 1.80 16 16 N -0.88 -25.16 12.89 55.43 0.71 -24.45 16 17 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C -0.21 -4.75 9.96 -26.69 -0.27 -5.01 16 22 C -0.15 -3.65 9.35 -26.70 -0.25 -3.90 16 23 C -0.10 -1.47 4.53 -25.70 -0.12 -1.58 16 24 H 0.06 0.69 7.73 -51.93 -0.40 0.29 16 25 H 0.05 0.49 8.03 -51.93 -0.42 0.08 16 26 H 0.08 0.94 2.86 -51.93 -0.15 0.79 16 27 H 0.05 0.51 8.12 -51.93 -0.42 0.08 16 28 H 0.05 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 31 H 0.07 0.87 6.67 -51.93 -0.35 0.53 16 32 H 0.35 3.69 5.50 -39.29 -0.22 3.48 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 35 H 0.08 1.57 7.46 -51.93 -0.39 1.18 16 36 H 0.08 1.25 4.35 -51.93 -0.23 1.02 16 37 H 0.05 1.32 7.70 -51.93 -0.40 0.92 16 38 H 0.01 0.23 8.02 -51.93 -0.42 -0.19 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.08 2.13 8.14 -51.93 -0.42 1.70 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.07 1.10 7.70 -51.93 -0.40 0.70 16 45 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -28.88 335.56 -9.07 -37.95 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.80 Total: 5.13 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -0.92 Total: -22.61 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.03 Total: -33.48 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.34 Total: -8.50 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.88 -9.07 -37.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703802668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.042 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds