Wall clock time and date at job start Mon Mar 30 2020 07:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 108.98281 * 2 1 4 4 C 1.50825 * 109.05118 * 241.05740 * 2 1 3 5 5 N 1.47634 * 108.03515 * 334.50860 * 4 2 1 6 6 C 1.39784 * 114.77047 * 277.19237 * 5 4 2 7 7 C 1.54428 * 111.76781 * 62.27233 * 6 5 4 8 8 C 1.50748 * 109.03156 * 282.61114 * 7 6 5 9 9 H 1.09000 * 108.85360 * 332.20236 * 8 7 6 10 10 O 1.42907 * 108.77492 * 213.76135 * 8 7 6 11 11 C 1.42902 * 113.99778 * 88.45480 * 10 8 7 12 12 C 1.53004 * 109.46909 * 180.02562 * 11 10 8 13 13 C 1.50706 * 115.54535 * 65.07280 * 12 11 10 14 14 H 1.07995 * 120.00101 * 267.39619 * 13 12 11 15 15 C 1.37884 * 119.99811 * 87.40189 * 13 12 11 16 16 N 1.31510 * 119.99854 * 351.64797 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 171.64391 * 15 13 12 18 18 H 1.48501 * 109.47048 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47236 * 119.99577 * 17 15 13 20 20 H 1.48499 * 109.47264 * 240.00258 * 17 15 13 21 21 C 1.52999 * 117.50192 * 279.40355 * 12 11 10 22 22 C 1.52993 * 117.49993 * 210.74131 * 12 11 10 23 23 C 1.53815 * 109.05088 * 118.94597 * 2 1 3 24 24 H 1.08998 * 109.47142 * 284.27005 * 1 2 3 25 25 H 1.09000 * 109.46683 * 44.26798 * 1 2 3 26 26 H 1.08997 * 109.47303 * 164.27134 * 1 2 3 27 27 H 1.08997 * 109.46954 * 178.94601 * 3 2 1 28 28 H 1.08999 * 109.46811 * 298.93871 * 3 2 1 29 29 H 1.08996 * 109.47541 * 58.94372 * 3 2 1 30 30 H 1.08994 * 109.75299 * 94.14451 * 4 2 1 31 31 H 1.08997 * 109.74662 * 214.82996 * 4 2 1 32 32 H 1.00902 * 110.99746 * 44.04698 * 5 4 2 33 33 H 1.08997 * 109.02262 * 182.86683 * 6 5 4 34 34 H 1.09004 * 109.01726 * 301.76842 * 6 5 4 35 35 H 1.09000 * 109.54452 * 162.74482 * 7 6 5 36 36 H 1.09004 * 109.54640 * 42.47844 * 7 6 5 37 37 H 1.09001 * 109.47579 * 300.00457 * 11 10 8 38 38 H 1.09002 * 109.46681 * 60.00523 * 11 10 8 39 39 H 0.97001 * 120.00332 * 180.02562 * 16 15 13 40 40 H 1.09000 * 117.49565 * 0.02562 * 21 12 11 41 41 H 1.09001 * 117.49785 * 145.01691 * 21 12 11 42 42 H 1.09001 * 117.50148 * 214.97830 * 22 12 11 43 43 H 1.09006 * 117.49793 * 359.97438 * 22 12 11 44 44 H 1.09006 * 108.97630 * 318.94004 * 23 2 1 45 45 H 1.09001 * 108.97854 * 200.23618 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0277 1.4468 0.0000 4 6 2.0223 -0.6899 -1.2476 5 7 0.9738 -1.6279 -1.6952 6 6 0.9788 -2.8655 -1.0454 7 6 0.7156 -2.7181 0.4691 8 6 1.9761 -2.2388 1.1428 9 1 2.8354 -2.5749 0.5623 10 8 2.0476 -2.8153 2.4485 11 6 2.6950 -4.0887 2.4869 12 6 2.7135 -4.6081 3.9260 13 6 1.3643 -4.9128 4.5243 14 1 0.8423 -4.1569 5.0922 15 6 0.7964 -6.1566 4.3468 16 7 1.3492 -7.0203 3.5234 17 14 -0.7579 -6.6149 5.2758 18 1 -1.1769 -5.4760 6.1318 19 1 -1.8389 -6.9295 4.3075 20 1 -0.4940 -7.8032 6.1265 21 6 3.7936 -4.0604 4.8610 22 6 3.8875 -5.4971 4.3411 23 6 2.0321 -0.7037 1.2723 24 1 -0.3633 0.2533 0.9959 25 1 -0.3633 0.7359 -0.7173 26 1 -0.3634 -0.9891 -0.2786 27 1 3.1174 1.4561 0.0189 28 1 1.6756 1.9521 -0.8994 29 1 1.6446 1.9629 0.8803 30 1 2.2126 0.0486 -2.0262 31 1 2.9385 -1.2381 -1.0281 32 1 0.0615 -1.1991 -1.6493 33 1 0.2053 -3.4983 -1.4805 34 1 1.9494 -3.3395 -1.1917 35 1 0.4245 -3.6830 0.8842 36 1 -0.0828 -1.9940 0.6318 37 1 2.1527 -4.7914 1.8543 38 1 3.7178 -3.9873 2.1237 39 1 0.9495 -7.8953 3.3982 40 1 4.4908 -3.3296 4.4510 41 1 3.5285 -3.9207 5.9090 42 1 3.6842 -6.3020 5.0474 43 1 4.6465 -5.7122 3.5889 44 1 1.4131 -0.3961 2.1152 45 1 3.0619 -0.4011 1.4618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703802668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:09 Heat of formation + Delta-G solvation = -20.976624 kcal Electronic energy + Delta-G solvation = -21970.303719 eV Core-core repulsion = 18988.523520 eV Total energy + Delta-G solvation = -2981.780200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58387 -39.10092 -37.33709 -35.48312 -34.00874 -32.50339 -29.27153 -28.36869 -27.93729 -26.89395 -26.41012 -23.74216 -22.93256 -21.75487 -21.08313 -19.45968 -18.25111 -17.77638 -17.51948 -16.73710 -16.48415 -15.99132 -15.74902 -15.42419 -14.96304 -14.71944 -14.52191 -13.95685 -13.75708 -13.73062 -13.40071 -13.20641 -13.03173 -12.94965 -12.81319 -12.67136 -12.39283 -12.21521 -12.08623 -12.03407 -11.88210 -11.67043 -11.34388 -11.30677 -10.94627 -10.83058 -10.45136 -10.29872 -9.98417 -9.16621 -8.13283 -6.21619 1.36733 1.39219 1.50626 2.41222 2.77962 3.15863 3.42525 3.55097 3.66639 3.84678 3.85924 4.00226 4.12595 4.27022 4.34463 4.38963 4.45905 4.48412 4.54939 4.58021 4.64551 4.69177 4.75923 4.85209 4.87229 4.92407 4.94561 4.96478 5.00077 5.11116 5.12707 5.17250 5.19205 5.33748 5.38553 5.42789 5.46049 5.58136 5.62820 5.76118 6.31678 6.38769 6.59364 6.63761 6.81682 7.45008 8.95967 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.005350 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.175803 B = 5232.122260 C = 5649.949489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.134 4.134 4 C 0.073 3.927 5 N -0.702 5.702 6 C 0.086 3.914 7 C -0.200 4.200 8 C 0.089 3.911 9 H 0.042 0.958 10 O -0.392 6.392 11 C 0.128 3.872 12 C 0.009 3.991 13 C -0.499 4.499 14 H 0.043 0.957 15 C 0.026 3.974 16 N -0.907 5.907 17 Si 0.947 3.053 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.276 1.276 21 C -0.185 4.185 22 C -0.149 4.149 23 C -0.098 4.098 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.358 0.642 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 13.952 -10.497 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.088 4.088 3 C -0.192 4.192 4 C -0.055 4.055 5 N -0.337 5.337 6 C -0.046 4.046 7 C -0.240 4.240 8 C 0.031 3.969 9 H 0.060 0.940 10 O -0.312 6.312 11 C 0.051 3.949 12 C 0.009 3.991 13 C -0.536 4.536 14 H 0.061 0.939 15 C -0.174 4.174 16 N -0.545 5.545 17 Si 0.773 3.227 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.202 1.202 21 C -0.223 4.223 22 C -0.187 4.187 23 C -0.135 4.135 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.185 0.815 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.041 0.959 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.714 13.619 -10.903 17.460 hybrid contribution -0.963 -0.823 1.478 1.946 sum -0.249 12.797 -9.425 15.895 Atomic orbital electron populations 1.22642 0.94672 1.03001 1.02666 1.20879 0.96383 0.96896 0.94607 1.21880 1.01294 0.93415 1.02563 1.21906 0.94068 0.94706 0.94808 1.57801 1.10313 1.05167 1.60384 1.20763 1.02000 0.92499 0.89365 1.23244 0.99760 1.01847 0.99110 1.22076 0.96465 0.94244 0.84083 0.94013 1.87950 1.79851 1.34271 1.29148 1.21800 0.92412 0.83406 0.97233 1.18932 0.90334 0.99009 0.90872 1.20575 1.02699 0.97522 1.32852 0.93873 1.25618 0.99863 0.96378 0.95513 1.70109 1.41568 1.07224 1.35621 0.85681 0.80011 0.78155 0.78893 1.19637 1.20618 1.20192 1.22958 1.03800 0.96046 0.99451 1.22424 1.01012 0.92627 1.02639 1.22018 1.01663 0.91535 0.98311 0.93001 0.90201 0.90630 0.92191 0.90645 0.92840 0.88391 0.92092 0.81468 0.90395 0.92626 0.94021 0.88725 0.95899 0.95697 0.93076 0.89421 0.90472 0.91711 0.90445 0.92538 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 6.47 71.98 0.47 -2.82 16 2 C -0.09 -1.72 0.73 -52.61 -0.04 -1.76 16 3 C -0.13 -2.10 8.02 71.98 0.58 -1.52 16 4 C 0.07 1.45 5.70 85.46 0.49 1.94 16 5 N -0.70 -15.03 6.32 -528.94 -3.34 -18.37 16 6 C 0.09 2.26 5.91 88.07 0.52 2.78 16 7 C -0.20 -6.49 5.19 30.35 0.16 -6.34 16 8 C 0.09 3.06 2.13 30.26 0.06 3.13 16 9 H 0.04 1.43 6.18 -2.39 -0.01 1.42 16 10 O -0.39 -17.73 9.78 -148.98 -1.46 -19.19 16 11 C 0.13 6.16 5.45 71.98 0.39 6.55 16 12 C 0.01 0.46 1.63 -52.93 -0.09 0.38 16 13 C -0.50 -28.70 8.77 25.60 0.22 -28.48 16 14 H 0.04 2.56 7.83 -2.91 -0.02 2.54 16 15 C 0.03 1.48 5.36 84.66 0.45 1.94 16 16 N -0.91 -52.63 12.89 21.45 0.28 -52.36 16 17 Si 0.95 44.69 29.55 68.60 2.03 46.71 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.19 -8.39 9.96 30.62 0.30 -8.09 16 22 C -0.15 -7.21 9.35 30.62 0.29 -6.92 16 23 C -0.10 -2.71 4.53 31.26 0.14 -2.56 16 24 H 0.05 1.09 7.73 -2.39 -0.02 1.07 16 25 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 26 H 0.08 1.56 2.86 -2.39 -0.01 1.55 16 27 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 28 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.54 7.66 -2.39 -0.02 1.52 16 31 H 0.06 1.36 6.67 -2.39 -0.02 1.35 16 32 H 0.36 6.68 5.50 -89.69 -0.49 6.18 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.58 7.54 -2.39 -0.02 1.56 16 35 H 0.04 1.68 7.46 -2.39 -0.02 1.66 16 36 H 0.09 2.83 4.35 -2.38 -0.01 2.82 16 37 H 0.02 1.21 7.70 -2.39 -0.02 1.19 16 38 H 0.02 1.10 8.02 -2.39 -0.02 1.08 16 39 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 41 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.06 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 44 H 0.06 1.73 7.70 -2.38 -0.02 1.71 16 45 H 0.06 1.74 7.96 -2.39 -0.02 1.72 16 Total: -1.00 -62.73 335.56 1.92 -60.81 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.46 Total: 24.16 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 3.95 Total: -41.76 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -3.06 Total: -70.73 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.46 Total: -19.19 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -62.73 1.92 -60.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703802668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.832 kcal (2) G-P(sol) polarization free energy of solvation -62.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds