Wall clock time and date at job start Mon Mar 30 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47277 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47518 * 180.02562 * 12 11 10 14 14 C 1.48916 * 111.00380 * 184.51640 * 13 12 11 15 15 C 1.54794 * 103.80993 * 200.11375 * 14 13 12 16 16 H 1.09001 * 105.47773 * 272.17213 * 15 14 13 17 17 C 1.49131 * 110.92354 * 156.89643 * 15 14 13 18 18 C 1.51054 * 117.52288 * 239.73974 * 17 15 14 19 19 H 1.09001 * 109.21861 * 206.26481 * 18 17 15 20 20 O 1.42896 * 109.21994 * 86.92061 * 18 17 15 21 21 C 1.52833 * 110.74757 * 326.59140 * 18 17 15 22 22 C 1.52826 * 107.46644 * 63.85342 * 21 18 17 23 23 C 1.51063 * 110.76603 * 295.00328 * 22 21 18 24 24 H 1.09002 * 108.52707 * 273.23498 * 23 22 21 25 25 C 1.48913 * 110.99849 * 69.87224 * 13 12 11 26 26 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 28 28 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 29 29 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 30 30 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 31 31 H 1.08997 * 109.47464 * 300.00503 * 11 10 9 32 32 H 1.09004 * 109.46840 * 59.99829 * 11 10 9 33 33 H 1.09005 * 109.47124 * 300.00327 * 12 11 10 34 34 H 1.09004 * 109.47330 * 60.00123 * 12 11 10 35 35 H 1.08997 * 110.56414 * 318.69276 * 14 13 12 36 36 H 1.09001 * 110.55754 * 81.52972 * 14 13 12 37 37 H 1.08999 * 107.84004 * 117.70199 * 17 15 14 38 38 H 1.09000 * 107.83389 * 1.77192 * 17 15 14 39 39 H 0.96700 * 113.99692 * 178.73811 * 20 18 17 40 40 H 1.08996 * 109.85738 * 304.36388 * 21 18 17 41 41 H 1.08995 * 109.85422 * 183.34261 * 21 18 17 42 42 H 1.09002 * 109.21718 * 174.67666 * 22 21 18 43 43 H 1.08997 * 109.22225 * 55.33855 * 22 21 18 44 44 H 1.08997 * 110.55206 * 278.39124 * 25 13 12 45 45 H 1.09004 * 110.54812 * 41.20507 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 6 6.0615 -4.0791 -0.0028 13 7 7.5305 -4.0792 -0.0033 14 6 8.0641 -5.4651 -0.1133 15 6 9.5145 -5.3455 0.4142 16 1 10.1181 -5.0774 -0.4529 17 6 10.0159 -6.6643 0.8973 18 6 10.4367 -6.7635 2.3446 19 1 11.1769 -7.5567 2.4496 20 8 9.2958 -7.0769 3.1458 21 6 11.0414 -5.4443 2.8242 22 6 9.9417 -4.3851 2.7591 23 6 9.5147 -4.1435 1.3304 24 1 10.1713 -3.3900 0.8953 25 6 8.0646 -3.6011 1.3019 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 -0.8911 28 1 3.8752 -0.6805 0.8888 29 1 3.6585 -3.1503 0.8893 30 1 3.6578 -3.1506 -0.8907 31 1 5.9142 -2.1231 -0.8926 32 1 5.9155 -2.1225 0.8873 33 1 5.6988 -4.5930 0.8875 34 1 5.6975 -4.5929 -0.8925 35 1 7.4859 -6.1485 0.5085 36 1 8.0605 -5.7953 -1.1521 37 1 10.8710 -6.9425 0.2812 38 1 9.2323 -7.4024 0.7262 39 1 9.4918 -7.1760 4.0876 40 1 11.8693 -5.1589 2.1752 41 1 11.3935 -5.5499 3.8503 42 1 10.3152 -3.4535 3.1843 43 1 9.0825 -4.7238 3.3380 44 1 8.0628 -2.5118 1.3402 45 1 7.4851 -4.0150 2.1272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709399477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:44 Heat of formation + Delta-G solvation = -73.434936 kcal Electronic energy + Delta-G solvation = -20746.271120 eV Core-core repulsion = 17762.216157 eV Total energy + Delta-G solvation = -2984.054963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46660 -37.77918 -35.45410 -33.97914 -32.49168 -32.10309 -30.59048 -28.30964 -27.13157 -24.94464 -23.09380 -21.98492 -21.93157 -20.44819 -19.95634 -18.61057 -17.21211 -16.73885 -16.53494 -15.63838 -15.31436 -14.87149 -14.52776 -14.35934 -14.04173 -13.56111 -13.22990 -12.98252 -12.91190 -12.62672 -12.38981 -12.09965 -11.88676 -11.84490 -11.47548 -11.43506 -11.10592 -10.99962 -10.90032 -10.69148 -10.46942 -10.30534 -10.20519 -10.02114 -9.82321 -9.60931 -9.41034 -9.09352 -8.48020 -8.42992 -5.98779 -3.96008 3.35425 3.42104 3.47229 3.89905 4.02980 4.24385 4.39910 4.45975 4.50860 4.67206 4.78050 4.91245 5.04163 5.19936 5.23351 5.35070 5.36034 5.40521 5.43709 5.55099 5.57868 5.61789 5.65794 5.78603 5.79375 5.83948 5.90400 5.96152 6.04669 6.09539 6.16887 6.18373 6.26293 6.45680 6.72045 6.84084 6.90492 6.98571 7.18594 7.35832 7.40742 7.53693 7.86933 8.61081 9.06800 9.64425 11.14941 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036980 B = 0.003116 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.989189 B = 8983.355394 C = 9157.104393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.102 4.102 11 C -0.114 4.114 12 C 0.045 3.955 13 N -0.511 5.511 14 C 0.033 3.967 15 C -0.077 4.077 16 H 0.065 0.935 17 C -0.103 4.103 18 C 0.111 3.889 19 H 0.052 0.948 20 O -0.563 6.563 21 C -0.150 4.150 22 C -0.108 4.108 23 C -0.077 4.077 24 H 0.069 0.931 25 C 0.036 3.964 26 H 0.262 0.738 27 H 0.011 0.989 28 H 0.014 0.986 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.373 0.627 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.873 -13.643 5.234 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.140 4.140 11 C -0.152 4.152 12 C -0.083 4.083 13 N -0.234 5.234 14 C -0.095 4.095 15 C -0.097 4.097 16 H 0.083 0.917 17 C -0.141 4.141 18 C 0.052 3.948 19 H 0.070 0.930 20 O -0.369 6.369 21 C -0.188 4.188 22 C -0.146 4.146 23 C -0.096 4.096 24 H 0.087 0.913 25 C -0.092 4.092 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.220 0.780 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 25.563 -13.143 4.150 29.042 hybrid contribution 0.289 0.420 1.113 1.224 sum 25.852 -12.724 5.263 29.290 Atomic orbital electron populations 1.69927 1.06314 1.26786 1.51563 1.25055 0.94737 0.99215 0.94667 0.86753 0.80353 0.83554 0.78496 1.20310 1.21472 1.19005 1.21206 0.89734 0.94391 1.50351 0.91139 1.19562 0.96892 0.92522 0.96111 1.21429 0.91943 0.99732 1.00875 1.21641 0.97218 0.94449 1.01871 1.22370 0.86461 0.98776 1.00717 1.65772 1.08975 1.18036 1.30658 1.23541 0.94366 0.90838 1.00752 1.20342 0.96887 0.93957 0.98472 0.91671 1.20329 1.01996 0.97726 0.94044 1.21318 0.87275 0.94962 0.91235 0.92990 1.86630 1.34856 1.93169 1.22231 1.22134 0.98717 0.96497 1.01434 1.21067 0.98862 0.98355 0.96316 1.20803 0.96995 0.96758 0.95041 0.91259 1.23477 0.93946 1.00780 0.91028 0.92834 0.97086 0.96816 0.93095 0.92886 0.91775 0.92751 0.94743 0.90940 0.93520 0.90446 0.91149 0.90796 0.78001 0.90873 0.91600 0.91985 0.91014 0.90162 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.76 13.96 55.43 0.77 -27.98 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.38 9.66 -34.44 -0.33 -15.71 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.11 5.15 -26.73 -0.14 -2.24 16 11 C -0.11 -1.97 5.27 -26.73 -0.14 -2.11 16 12 C 0.04 0.67 4.83 -3.83 -0.02 0.65 16 13 N -0.51 -6.97 5.41 -228.78 -1.24 -8.21 16 14 C 0.03 0.39 5.70 -1.76 -0.01 0.38 16 15 C -0.08 -0.75 2.80 -92.51 -0.26 -1.01 16 16 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 17 C -0.10 -0.85 5.20 -29.61 -0.15 -1.00 16 18 C 0.11 0.81 3.73 -27.80 -0.10 0.70 16 19 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 20 O -0.56 -4.83 12.12 -35.23 -0.43 -5.26 16 21 C -0.15 -0.99 5.72 -26.91 -0.15 -1.15 16 22 C -0.11 -0.92 5.27 -27.79 -0.15 -1.07 16 23 C -0.08 -0.77 2.94 -91.56 -0.27 -1.04 16 24 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 25 C 0.04 0.44 5.22 -1.74 -0.01 0.44 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.93 7.24 -51.93 -0.38 0.55 16 33 H 0.03 0.52 7.90 -51.93 -0.41 0.11 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.58 7.68 -51.93 -0.40 0.18 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 38 H 0.07 0.68 7.20 -51.93 -0.37 0.31 16 39 H 0.37 1.76 9.08 45.56 0.41 2.17 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.69 6.62 -51.93 -0.34 0.35 16 44 H 0.08 1.03 7.75 -51.93 -0.40 0.62 16 45 H 0.05 0.62 7.26 -51.93 -0.38 0.25 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.66 340.07 -10.07 -42.73 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.69 Total: -2.40 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.94 Total: -21.79 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.46 Total: -36.19 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.43 Total: -5.26 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.66 -10.07 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709399477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.707 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds