Wall clock time and date at job start Mon Mar 30 2020 06:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47277 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47518 * 180.02562 * 12 11 10 14 14 C 1.48916 * 111.00380 * 184.51640 * 13 12 11 15 15 C 1.54794 * 103.80993 * 200.11375 * 14 13 12 16 16 H 1.09001 * 105.47773 * 272.17213 * 15 14 13 17 17 C 1.49131 * 110.92354 * 156.89643 * 15 14 13 18 18 C 1.51054 * 117.52288 * 239.73974 * 17 15 14 19 19 H 1.09001 * 109.21861 * 206.26481 * 18 17 15 20 20 O 1.42896 * 109.21994 * 86.92061 * 18 17 15 21 21 C 1.52833 * 110.74757 * 326.59140 * 18 17 15 22 22 C 1.52826 * 107.46644 * 63.85342 * 21 18 17 23 23 C 1.51063 * 110.76603 * 295.00328 * 22 21 18 24 24 H 1.09002 * 108.52707 * 273.23498 * 23 22 21 25 25 C 1.48913 * 110.99849 * 69.87224 * 13 12 11 26 26 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 28 28 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 29 29 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 30 30 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 31 31 H 1.08997 * 109.47464 * 300.00503 * 11 10 9 32 32 H 1.09004 * 109.46840 * 59.99829 * 11 10 9 33 33 H 1.09005 * 109.47124 * 300.00327 * 12 11 10 34 34 H 1.09004 * 109.47330 * 60.00123 * 12 11 10 35 35 H 1.08997 * 110.56414 * 318.69276 * 14 13 12 36 36 H 1.09001 * 110.55754 * 81.52972 * 14 13 12 37 37 H 1.08999 * 107.84004 * 117.70199 * 17 15 14 38 38 H 1.09000 * 107.83389 * 1.77192 * 17 15 14 39 39 H 0.96700 * 113.99692 * 178.73811 * 20 18 17 40 40 H 1.08996 * 109.85738 * 304.36388 * 21 18 17 41 41 H 1.08995 * 109.85422 * 183.34261 * 21 18 17 42 42 H 1.09002 * 109.21718 * 174.67666 * 22 21 18 43 43 H 1.08997 * 109.22225 * 55.33855 * 22 21 18 44 44 H 1.08997 * 110.55206 * 278.39124 * 25 13 12 45 45 H 1.09004 * 110.54812 * 41.20507 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 6 6.0615 -4.0791 -0.0028 13 7 7.5305 -4.0792 -0.0033 14 6 8.0641 -5.4651 -0.1133 15 6 9.5145 -5.3455 0.4142 16 1 10.1181 -5.0774 -0.4529 17 6 10.0159 -6.6643 0.8973 18 6 10.4367 -6.7635 2.3446 19 1 11.1769 -7.5567 2.4496 20 8 9.2958 -7.0769 3.1458 21 6 11.0414 -5.4443 2.8242 22 6 9.9417 -4.3851 2.7591 23 6 9.5147 -4.1435 1.3304 24 1 10.1713 -3.3900 0.8953 25 6 8.0646 -3.6011 1.3019 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 -0.8911 28 1 3.8752 -0.6805 0.8888 29 1 3.6585 -3.1503 0.8893 30 1 3.6578 -3.1506 -0.8907 31 1 5.9142 -2.1231 -0.8926 32 1 5.9155 -2.1225 0.8873 33 1 5.6988 -4.5930 0.8875 34 1 5.6975 -4.5929 -0.8925 35 1 7.4859 -6.1485 0.5085 36 1 8.0605 -5.7953 -1.1521 37 1 10.8710 -6.9425 0.2812 38 1 9.2323 -7.4024 0.7262 39 1 9.4918 -7.1760 4.0876 40 1 11.8693 -5.1589 2.1752 41 1 11.3935 -5.5499 3.8503 42 1 10.3152 -3.4535 3.1843 43 1 9.0825 -4.7238 3.3380 44 1 8.0628 -2.5118 1.3402 45 1 7.4851 -4.0150 2.1272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709399477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:43 Heat of formation + Delta-G solvation = -96.200421 kcal Electronic energy + Delta-G solvation = -20747.258305 eV Core-core repulsion = 17762.216157 eV Total energy + Delta-G solvation = -2985.042148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24554 -38.59622 -36.78381 -35.33515 -34.14781 -33.03057 -31.80131 -29.75715 -27.98229 -26.47793 -24.13977 -23.14073 -22.64963 -21.86299 -21.54987 -19.29961 -18.85922 -17.79366 -17.43569 -16.59581 -16.55103 -16.29540 -15.68305 -15.43912 -15.17008 -14.79817 -14.68342 -14.11643 -13.87695 -13.68951 -13.60054 -13.52698 -13.05577 -13.00710 -12.76700 -12.56121 -12.31018 -12.21432 -11.91015 -11.86605 -11.76547 -11.63088 -11.39796 -11.31122 -11.21091 -11.01325 -10.94231 -10.77535 -10.58048 -9.51410 -8.30889 -6.35171 1.34985 1.36914 1.49709 2.35738 2.98686 3.04264 3.34619 3.53804 3.68493 3.79115 3.99708 4.04335 4.12507 4.14384 4.32407 4.36612 4.46628 4.50096 4.52813 4.61321 4.62308 4.69601 4.75186 4.78315 4.82513 4.90081 4.96300 5.01658 5.11515 5.12127 5.13749 5.17675 5.21133 5.28539 5.36381 5.44526 5.51351 5.54511 5.61886 5.66671 5.90710 6.04213 6.27883 6.72768 6.97342 7.29604 8.86245 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036980 B = 0.003116 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.989189 B = 8983.355394 C = 9157.104393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.095 4.095 11 C -0.100 4.100 12 C 0.052 3.948 13 N -0.520 5.520 14 C 0.032 3.968 15 C -0.072 4.072 16 H 0.070 0.930 17 C -0.106 4.106 18 C 0.108 3.892 19 H 0.071 0.929 20 O -0.587 6.587 21 C -0.144 4.144 22 C -0.107 4.107 23 C -0.073 4.073 24 H 0.073 0.927 25 C 0.032 3.968 26 H 0.267 0.733 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.388 0.612 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.094 -13.221 5.462 32.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.133 4.133 11 C -0.138 4.138 12 C -0.076 4.076 13 N -0.243 5.243 14 C -0.096 4.096 15 C -0.091 4.091 16 H 0.089 0.911 17 C -0.143 4.143 18 C 0.050 3.950 19 H 0.089 0.911 20 O -0.396 6.396 21 C -0.181 4.181 22 C -0.145 4.145 23 C -0.092 4.092 24 H 0.091 0.909 25 C -0.096 4.096 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 28.804 -12.745 4.389 31.802 hybrid contribution -0.808 0.208 1.044 1.336 sum 27.996 -12.537 5.433 31.152 Atomic orbital electron populations 1.70080 1.08349 1.28226 1.52744 1.26086 0.95688 1.03734 0.94028 0.85590 0.79412 0.77926 0.79318 1.19004 1.20731 1.17090 1.21561 0.92349 0.93089 1.50408 0.95244 1.19521 0.93676 0.95238 0.96367 1.21301 0.94541 0.97061 1.00394 1.21449 0.94291 0.96075 1.02010 1.22194 0.87769 0.97082 1.00583 1.65748 1.07713 1.19440 1.31378 1.23611 0.95501 0.89407 1.01067 1.20354 0.95432 0.94725 0.98635 0.91104 1.20376 1.02344 0.96238 0.95378 1.21416 0.87256 0.95963 0.90400 0.91078 1.86595 1.35997 1.93299 1.23663 1.22112 0.98054 0.95224 1.02721 1.21041 0.99107 0.99415 0.94907 1.20814 0.95241 0.96878 0.96270 0.90867 1.23527 0.95486 1.00502 0.90057 0.92445 0.96355 0.96411 0.93767 0.93329 0.91655 0.92468 0.95301 0.90770 0.94660 0.89851 0.89099 0.92127 0.76310 0.89961 0.89915 0.91331 0.92488 0.90639 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 2 C 0.00 0.06 5.47 84.66 0.46 0.52 16 3 Si 0.95 45.82 27.47 68.60 1.88 47.70 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.54 -32.49 9.66 25.60 0.25 -32.24 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.09 -3.93 5.15 30.60 0.16 -3.77 16 11 C -0.10 -3.37 5.27 30.59 0.16 -3.21 16 12 C 0.05 1.54 4.83 86.30 0.42 1.96 16 13 N -0.52 -13.69 5.41 -877.72 -4.75 -18.44 16 14 C 0.03 0.71 5.70 86.52 0.49 1.21 16 15 C -0.07 -1.28 2.80 -12.02 -0.03 -1.31 16 16 H 0.07 1.18 8.06 -2.39 -0.02 1.16 16 17 C -0.11 -1.51 5.20 28.73 0.15 -1.36 16 18 C 0.11 1.31 3.73 29.90 0.11 1.42 16 19 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 20 O -0.59 -9.21 12.12 -148.98 -1.81 -11.02 16 21 C -0.14 -1.49 5.72 30.48 0.17 -1.31 16 22 C -0.11 -1.62 5.27 29.91 0.16 -1.46 16 23 C -0.07 -1.35 2.94 -11.40 -0.03 -1.38 16 24 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 25 C 0.03 0.78 5.22 86.54 0.45 1.23 16 26 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 27 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 28 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 1.89 7.24 -2.38 -0.02 1.87 16 33 H 0.03 0.88 7.90 -2.38 -0.02 0.86 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.04 0.87 7.68 -2.39 -0.02 0.85 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 0.92 8.11 -2.39 -0.02 0.90 16 38 H 0.06 1.04 7.20 -2.39 -0.02 1.02 16 39 H 0.39 3.05 9.08 -74.06 -0.67 2.38 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.04 6.62 -2.39 -0.02 1.02 16 44 H 0.08 1.86 7.75 -2.39 -0.02 1.84 16 45 H 0.04 0.95 7.26 -2.38 -0.02 0.93 16 Total: -1.00 -70.82 340.07 -1.12 -71.94 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.21 Total: 11.37 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 3.04 Total: -40.12 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -4.45 Total: -79.87 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.81 Total: -11.02 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -70.82 -1.12 -71.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709399477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.257 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds