Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47247 * 239.99832 * 3 2 1 5 5 H 1.48500 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46761 * 119.99993 * 3 2 1 7 7 C 1.37872 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99999 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46672 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99340 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46931 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 64.99951 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47224 * 325.00460 * 14 13 12 16 16 C 1.53002 * 109.47102 * 85.00132 * 14 13 12 17 17 C 1.53001 * 109.46953 * 59.99749 * 16 14 13 18 18 C 1.53003 * 109.46807 * 60.00364 * 17 16 14 19 19 C 1.53002 * 109.47067 * 299.99566 * 18 17 16 20 20 C 1.52992 * 109.47100 * 59.99947 * 19 18 17 21 21 H 1.09012 * 109.46742 * 60.00126 * 20 19 18 22 22 C 1.52994 * 109.47280 * 179.97438 * 20 19 18 23 23 C 1.53009 * 117.50085 * 248.62704 * 22 20 19 24 24 C 1.52999 * 117.50047 * 180.02562 * 22 20 19 25 25 H 0.97000 * 119.99603 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47072 * 60.00125 * 9 7 2 27 27 H 1.08996 * 109.47124 * 299.99684 * 9 7 2 28 28 H 1.08996 * 109.47237 * 60.00538 * 11 10 9 29 29 H 1.09000 * 109.47615 * 299.99847 * 11 10 9 30 30 H 1.09004 * 109.46889 * 305.00332 * 12 11 10 31 31 H 1.08995 * 109.47384 * 184.99972 * 12 11 10 32 32 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 33 33 H 1.08999 * 109.47105 * 180.02562 * 16 14 13 34 34 H 1.08996 * 109.46950 * 299.99914 * 16 14 13 35 35 H 1.08998 * 109.46810 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.47576 * 300.00153 * 17 16 14 37 37 H 1.08995 * 109.47309 * 60.00087 * 18 17 16 38 38 H 1.09003 * 109.47144 * 179.97438 * 18 17 16 39 39 H 1.08996 * 109.46950 * 180.02562 * 19 18 17 40 40 H 1.09004 * 109.46910 * 300.00505 * 19 18 17 41 41 H 1.09001 * 115.55068 * 34.33536 * 22 20 19 42 42 H 1.08997 * 117.49691 * 359.97438 * 23 22 20 43 43 H 1.09000 * 117.49680 * 145.02323 * 23 22 20 44 44 H 1.09007 * 117.49858 * 214.98051 * 24 22 20 45 45 H 1.09001 * 117.50058 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5649 -4.8754 -0.0019 12 6 2.6478 -5.9562 -0.0023 13 7 3.4079 -5.8883 1.2530 14 6 4.4594 -6.9136 1.2880 15 1 4.1070 -7.8128 0.7826 16 6 5.7090 -6.3869 0.5794 17 6 6.2036 -5.1247 1.2887 18 6 6.5438 -5.4571 2.7429 19 6 5.2941 -5.9837 3.4515 20 6 4.7995 -7.2458 2.7422 21 1 5.5798 -8.0066 2.7681 22 6 3.5503 -7.7728 3.4510 23 6 3.6730 -9.0970 4.2078 24 6 2.9002 -9.0387 2.8890 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8880 28 1 0.9452 -4.9823 -0.8922 29 1 0.9444 -4.9826 0.8877 30 1 3.3215 -5.7954 -0.8440 31 1 2.1819 -6.9375 -0.0922 32 1 3.7965 -4.9674 1.3910 33 1 6.4890 -7.1478 0.6050 34 1 5.4666 -6.1502 -0.4566 35 1 7.0941 -4.7498 0.7842 36 1 5.4234 -4.3639 1.2628 37 1 7.3240 -6.2177 2.7689 38 1 6.8966 -4.5579 3.2482 39 1 5.5364 -6.2201 4.4876 40 1 4.5139 -5.2229 3.4255 41 1 2.8916 -7.0123 3.8705 42 1 4.6437 -9.5929 4.2002 43 1 3.0951 -9.2077 5.1253 44 1 1.8136 -9.1111 2.9388 45 1 3.3622 -9.4958 2.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709977237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = -50.788290 kcal Electronic energy + Delta-G solvation = -21212.414060 eV Core-core repulsion = 18229.341129 eV Total energy + Delta-G solvation = -2983.072931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75112 -36.99082 -36.35957 -34.09619 -32.62885 -30.52043 -30.10802 -27.58797 -26.26206 -23.29686 -22.79943 -22.34556 -21.87263 -21.46605 -20.10132 -18.82755 -16.53379 -16.12993 -15.78703 -15.34099 -15.14219 -14.60314 -14.51745 -14.21896 -14.05977 -13.52199 -13.29152 -13.06882 -12.59970 -12.21061 -12.13225 -11.91592 -11.61689 -11.58464 -11.40226 -11.16647 -11.02350 -10.81920 -10.73510 -10.56502 -10.41999 -10.37996 -10.28114 -10.00923 -9.87491 -9.59507 -9.10247 -8.79901 -8.14737 -8.01135 -6.09588 -4.11403 3.32401 3.35259 3.38847 3.87911 4.35765 4.40334 4.68541 4.78945 4.81662 4.98695 5.02447 5.07045 5.08504 5.26803 5.33488 5.41261 5.51552 5.54135 5.60048 5.62798 5.64688 5.69403 5.72334 5.83445 5.86858 5.94808 6.02929 6.11430 6.12622 6.19476 6.25763 6.26686 6.30480 6.37829 6.41687 6.46176 6.61427 7.13806 7.38371 7.46348 7.79618 7.81419 8.17136 8.60310 9.01593 9.53392 11.01895 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.004291 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.846108 B = 6523.828131 C = 7052.181847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.063 3.937 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.094 3.906 15 H 0.071 0.929 16 C -0.150 4.150 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.041 4.041 21 H 0.064 0.936 22 C -0.117 4.117 23 C -0.194 4.194 24 C -0.177 4.177 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.005 0.995 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.355 0.645 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -16.948 5.177 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.124 3.876 10 O -0.319 6.319 11 C -0.015 4.015 12 C -0.063 4.063 13 N -0.309 5.309 14 C -0.016 4.016 15 H 0.090 0.910 16 C -0.189 4.189 17 C -0.162 4.162 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.060 4.060 21 H 0.082 0.918 22 C -0.135 4.135 23 C -0.231 4.231 24 C -0.214 4.214 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.450 -17.152 5.525 20.348 hybrid contribution 0.604 1.181 -0.735 1.516 sum 10.054 -15.971 4.790 19.471 Atomic orbital electron populations 1.69958 1.06096 1.27219 1.50488 1.24938 0.94954 0.99374 0.95171 0.86413 0.79330 0.82028 0.78801 1.20076 1.21163 1.20009 1.21008 0.93924 0.89439 1.50902 0.91721 1.20154 0.88699 0.83481 0.95310 1.87783 1.35743 1.13148 1.95220 1.22293 0.94631 0.85285 0.99324 1.21950 0.95644 0.97723 0.90986 1.60634 1.26470 1.09146 1.34669 1.21525 0.89904 0.95331 0.94851 0.91043 1.22198 0.98808 0.98145 0.99727 1.21551 1.01313 0.97837 0.95517 1.21523 0.97682 1.00560 0.95737 1.21536 0.97649 0.97556 0.98326 1.20693 0.94651 0.96764 0.93886 0.91781 1.22134 0.99291 0.90384 1.01686 1.23033 1.01769 1.02426 0.95840 1.22802 0.99222 1.02777 0.96643 0.92624 0.97916 0.97683 0.94433 0.93656 0.95073 0.90956 0.82242 0.92101 0.92032 0.92186 0.90943 0.92606 0.92053 0.92376 0.90662 0.87445 0.89454 0.89404 0.89254 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -15.15 9.43 -34.44 -0.32 -15.47 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.20 5.46 5.69 36.01 0.20 5.66 16 10 O -0.40 -9.51 9.85 -35.23 -0.35 -9.86 16 11 C 0.06 1.18 6.28 37.16 0.23 1.41 16 12 C 0.07 1.00 5.90 -3.82 -0.02 0.98 16 13 N -0.67 -9.74 5.35 -106.72 -0.57 -10.31 16 14 C 0.09 1.11 2.14 -67.71 -0.14 0.97 16 15 H 0.07 0.83 6.95 -51.93 -0.36 0.47 16 16 C -0.15 -1.72 5.52 -26.73 -0.15 -1.87 16 17 C -0.12 -1.50 5.67 -26.73 -0.15 -1.65 16 18 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 19 C -0.11 -1.27 4.95 -26.73 -0.13 -1.40 16 20 C -0.04 -0.44 2.16 -90.63 -0.20 -0.64 16 21 H 0.06 0.65 7.90 -51.92 -0.41 0.24 16 22 C -0.12 -1.29 4.76 -90.62 -0.43 -1.72 16 23 C -0.19 -1.86 10.17 -26.75 -0.27 -2.13 16 24 C -0.18 -1.82 9.73 -26.75 -0.26 -2.08 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 26 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.48 7.44 -51.93 -0.39 0.10 16 31 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.35 5.82 5.12 -39.29 -0.20 5.62 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.04 6.26 -51.93 -0.32 0.72 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.99 7.21 -51.93 -0.37 0.62 16 41 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.09 0.77 8.05 -51.93 -0.42 0.36 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.85 7.61 -51.93 -0.40 0.46 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -29.62 348.96 -10.14 -39.75 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.29 Total: 2.41 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.90 Total: -17.82 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.17 Total: -36.60 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.35 Total: -9.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.62 -10.14 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.036 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds