Wall clock time and date at job start Mon Mar 30 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47247 * 239.99832 * 3 2 1 5 5 H 1.48500 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46761 * 119.99993 * 3 2 1 7 7 C 1.37872 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99999 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46672 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99340 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46931 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 64.99951 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47224 * 325.00460 * 14 13 12 16 16 C 1.53002 * 109.47102 * 85.00132 * 14 13 12 17 17 C 1.53001 * 109.46953 * 59.99749 * 16 14 13 18 18 C 1.53003 * 109.46807 * 60.00364 * 17 16 14 19 19 C 1.53002 * 109.47067 * 299.99566 * 18 17 16 20 20 C 1.52992 * 109.47100 * 59.99947 * 19 18 17 21 21 H 1.09012 * 109.46742 * 60.00126 * 20 19 18 22 22 C 1.52994 * 109.47280 * 179.97438 * 20 19 18 23 23 C 1.53009 * 117.50085 * 248.62704 * 22 20 19 24 24 C 1.52999 * 117.50047 * 180.02562 * 22 20 19 25 25 H 0.97000 * 119.99603 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47072 * 60.00125 * 9 7 2 27 27 H 1.08996 * 109.47124 * 299.99684 * 9 7 2 28 28 H 1.08996 * 109.47237 * 60.00538 * 11 10 9 29 29 H 1.09000 * 109.47615 * 299.99847 * 11 10 9 30 30 H 1.09004 * 109.46889 * 305.00332 * 12 11 10 31 31 H 1.08995 * 109.47384 * 184.99972 * 12 11 10 32 32 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 33 33 H 1.08999 * 109.47105 * 180.02562 * 16 14 13 34 34 H 1.08996 * 109.46950 * 299.99914 * 16 14 13 35 35 H 1.08998 * 109.46810 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.47576 * 300.00153 * 17 16 14 37 37 H 1.08995 * 109.47309 * 60.00087 * 18 17 16 38 38 H 1.09003 * 109.47144 * 179.97438 * 18 17 16 39 39 H 1.08996 * 109.46950 * 180.02562 * 19 18 17 40 40 H 1.09004 * 109.46910 * 300.00505 * 19 18 17 41 41 H 1.09001 * 115.55068 * 34.33536 * 22 20 19 42 42 H 1.08997 * 117.49691 * 359.97438 * 23 22 20 43 43 H 1.09000 * 117.49680 * 145.02323 * 23 22 20 44 44 H 1.09007 * 117.49858 * 214.98051 * 24 22 20 45 45 H 1.09001 * 117.50058 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5649 -4.8754 -0.0019 12 6 2.6478 -5.9562 -0.0023 13 7 3.4079 -5.8883 1.2530 14 6 4.4594 -6.9136 1.2880 15 1 4.1070 -7.8128 0.7826 16 6 5.7090 -6.3869 0.5794 17 6 6.2036 -5.1247 1.2887 18 6 6.5438 -5.4571 2.7429 19 6 5.2941 -5.9837 3.4515 20 6 4.7995 -7.2458 2.7422 21 1 5.5798 -8.0066 2.7681 22 6 3.5503 -7.7728 3.4510 23 6 3.6730 -9.0970 4.2078 24 6 2.9002 -9.0387 2.8890 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8880 28 1 0.9452 -4.9823 -0.8922 29 1 0.9444 -4.9826 0.8877 30 1 3.3215 -5.7954 -0.8440 31 1 2.1819 -6.9375 -0.0922 32 1 3.7965 -4.9674 1.3910 33 1 6.4890 -7.1478 0.6050 34 1 5.4666 -6.1502 -0.4566 35 1 7.0941 -4.7498 0.7842 36 1 5.4234 -4.3639 1.2628 37 1 7.3240 -6.2177 2.7689 38 1 6.8966 -4.5579 3.2482 39 1 5.5364 -6.2201 4.4876 40 1 4.5139 -5.2229 3.4255 41 1 2.8916 -7.0123 3.8705 42 1 4.6437 -9.5929 4.2002 43 1 3.0951 -9.2077 5.1253 44 1 1.8136 -9.1111 2.9388 45 1 3.3622 -9.4958 2.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709977237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:19 Heat of formation + Delta-G solvation = -67.334780 kcal Electronic energy + Delta-G solvation = -21213.131570 eV Core-core repulsion = 18229.341129 eV Total energy + Delta-G solvation = -2983.790440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70544 -38.67566 -37.35305 -35.45358 -34.69268 -31.43927 -31.33438 -29.41991 -27.82516 -24.52898 -24.20298 -23.66971 -22.88400 -22.69272 -20.99016 -19.78895 -18.65185 -17.51150 -17.20041 -16.76775 -16.42998 -16.32132 -15.55376 -15.40802 -15.33641 -14.95390 -14.48964 -14.22728 -13.92678 -13.46740 -13.40223 -13.30755 -12.93795 -12.82658 -12.72343 -12.51469 -12.38760 -12.29522 -12.22007 -11.94533 -11.82804 -11.32697 -11.29541 -11.27898 -11.18403 -10.86886 -10.74174 -10.48131 -10.22859 -9.14263 -8.32290 -6.44907 1.39185 1.43975 1.52353 2.34100 3.01561 3.06719 3.22645 3.32023 3.77892 3.86372 3.92254 4.14715 4.20493 4.23403 4.26829 4.36911 4.45651 4.52277 4.55606 4.61488 4.68020 4.72536 4.76776 4.81435 4.83995 4.88855 4.94827 4.97938 5.00963 5.11014 5.16293 5.18667 5.28161 5.29837 5.37089 5.42675 5.47512 5.52804 5.54209 5.68813 5.95401 6.27989 6.52673 6.55665 6.81368 7.27044 8.79932 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.004291 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.846108 B = 6523.828131 C = 7052.181847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.212 3.788 10 O -0.407 6.407 11 C 0.055 3.945 12 C 0.077 3.923 13 N -0.681 5.681 14 C 0.095 3.905 15 H 0.081 0.919 16 C -0.145 4.145 17 C -0.125 4.125 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.033 4.033 21 H 0.082 0.918 22 C -0.131 4.131 23 C -0.180 4.180 24 C -0.178 4.178 25 H 0.271 0.729 26 H -0.017 1.017 27 H -0.017 1.017 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.029 0.971 31 H 0.100 0.900 32 H 0.342 0.658 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 -17.878 5.383 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.137 3.863 10 O -0.327 6.327 11 C -0.022 4.022 12 C -0.052 4.052 13 N -0.314 5.314 14 C -0.015 4.015 15 H 0.099 0.901 16 C -0.184 4.184 17 C -0.163 4.163 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.052 4.052 21 H 0.100 0.900 22 C -0.149 4.149 23 C -0.217 4.217 24 C -0.215 4.215 25 H 0.079 0.921 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.118 0.882 32 H 0.162 0.838 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.208 -18.120 5.732 22.064 hybrid contribution 0.003 1.390 -0.781 1.594 sum 11.211 -16.730 4.951 20.738 Atomic orbital electron populations 1.70072 1.07803 1.28688 1.50458 1.25957 0.95932 1.03374 0.93895 0.85246 0.78111 0.76756 0.79377 1.18989 1.19994 1.18998 1.21341 0.94049 0.90793 1.52305 0.91988 1.19770 0.88572 0.84712 0.93221 1.87755 1.35437 1.14327 1.95180 1.22598 0.96212 0.83985 0.99377 1.21889 0.94700 0.97269 0.91362 1.60671 1.27636 1.09064 1.34069 1.21617 0.89304 0.94638 0.95899 0.90095 1.22155 0.99186 0.98277 0.98770 1.21533 1.00484 0.97454 0.96782 1.21493 0.97854 1.01095 0.94558 1.21497 0.97082 0.97144 0.99145 1.20647 0.94952 0.96780 0.92848 0.89958 1.22026 0.99388 0.90520 1.02989 1.23091 1.02296 1.00683 0.95618 1.22843 0.99176 1.01989 0.97493 0.92060 0.99877 0.99942 0.93771 0.94140 0.95318 0.88202 0.83751 0.89904 0.93192 0.91662 0.94045 0.90630 0.92215 0.91412 0.93396 0.89794 0.88042 0.89058 0.89700 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.98 44.74 29.54 68.60 2.03 46.76 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.55 -33.00 9.43 25.60 0.24 -32.76 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.21 5.69 71.24 0.41 12.61 16 10 O -0.41 -20.11 9.85 -148.98 -1.47 -21.58 16 11 C 0.06 2.13 6.28 71.98 0.45 2.58 16 12 C 0.08 2.30 5.90 86.30 0.51 2.81 16 13 N -0.68 -19.68 5.35 -491.55 -2.63 -22.31 16 14 C 0.10 2.11 2.14 44.91 0.10 2.21 16 15 H 0.08 1.67 6.95 -2.39 -0.02 1.65 16 16 C -0.14 -3.11 5.52 30.60 0.17 -2.94 16 17 C -0.12 -2.94 5.67 30.60 0.17 -2.77 16 18 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 19 C -0.11 -2.41 4.95 30.59 0.15 -2.26 16 20 C -0.03 -0.66 2.16 -10.80 -0.02 -0.69 16 21 H 0.08 1.39 7.90 -2.38 -0.02 1.37 16 22 C -0.13 -2.74 4.76 -10.79 -0.05 -2.79 16 23 C -0.18 -3.04 10.17 30.58 0.31 -2.73 16 24 C -0.18 -3.31 9.73 30.58 0.30 -3.01 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 0.88 7.44 -2.39 -0.02 0.86 16 31 H 0.10 2.45 8.06 -2.39 -0.02 2.43 16 32 H 0.34 11.62 5.12 -89.69 -0.46 11.16 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.19 7.45 -2.39 -0.02 1.17 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.24 6.26 -2.39 -0.01 1.22 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.30 7.21 -2.38 -0.02 1.28 16 41 H 0.08 2.15 8.11 -2.39 -0.02 2.14 16 42 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.10 1.61 7.61 -2.39 -0.02 1.59 16 Total: -1.00 -64.39 348.96 2.06 -62.33 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.48 Total: 22.21 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.38 Total: -30.96 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -2.35 Total: -78.76 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.47 Total: -21.58 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.39 2.06 -62.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.006 kcal (2) G-P(sol) polarization free energy of solvation -64.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds