Wall clock time and date at job start Mon Mar 30 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.46904 * 111.00309 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.46743 * 34.99336 * 14 13 12 16 16 C 1.53000 * 109.46697 * 274.99788 * 14 13 12 17 17 C 1.53000 * 109.46883 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47399 * 59.99863 * 17 16 14 19 19 C 1.53000 * 109.46995 * 300.00256 * 18 17 16 20 20 C 1.52991 * 109.47376 * 59.99697 * 19 18 17 21 21 H 1.09002 * 109.47268 * 59.99999 * 20 19 18 22 22 C 1.53000 * 109.47376 * 179.97438 * 20 19 18 23 23 C 1.53000 * 117.50261 * 248.62140 * 22 20 19 24 24 C 1.53000 * 60.00140 * 252.51199 * 23 22 20 25 25 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 27 27 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 28 28 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 29 29 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 30 30 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 31 31 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 32 32 H 1.00896 * 111.00234 * 56.04077 * 13 12 11 33 33 H 1.08998 * 109.47154 * 299.99296 * 16 14 13 34 34 H 1.09001 * 109.47599 * 59.99877 * 16 14 13 35 35 H 1.09007 * 109.47368 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47294 * 299.99904 * 17 16 14 37 37 H 1.08998 * 109.47241 * 60.00103 * 18 17 16 38 38 H 1.08994 * 109.47545 * 180.02562 * 18 17 16 39 39 H 1.09006 * 109.47271 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.46923 * 299.99485 * 19 18 17 41 41 H 1.08999 * 115.54926 * 34.33126 * 22 20 19 42 42 H 1.09004 * 117.49577 * 0.02562 * 23 22 20 43 43 H 1.08997 * 117.49995 * 145.01803 * 23 22 20 44 44 H 1.09004 * 117.49297 * 252.51163 * 24 23 22 45 45 H 1.08992 * 117.49993 * 107.49113 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 6 4.4600 -6.9135 1.2892 15 1 4.8613 -7.0571 0.2860 16 6 3.8697 -8.2310 1.7957 17 6 4.9640 -9.2997 1.8318 18 6 6.0858 -8.8495 2.7696 19 6 6.6761 -7.5320 2.2631 20 6 5.5819 -6.4634 2.2271 21 1 5.1809 -6.3199 3.2305 22 6 6.1723 -5.1456 1.7212 23 6 6.2845 -3.9921 2.7200 24 6 5.2301 -3.9450 1.6123 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 0.9453 -4.9822 0.8903 29 1 0.9448 -4.9826 -0.8898 30 1 2.1822 -6.9374 -0.0898 31 1 3.3212 -5.7956 -0.8429 32 1 2.7978 -5.9691 2.0526 33 1 3.4684 -8.0875 2.7990 34 1 3.0707 -8.5520 1.1273 35 1 4.5436 -10.2383 2.1931 36 1 5.3650 -9.4432 0.8284 37 1 5.6850 -8.7061 3.7730 38 1 6.8656 -9.6106 2.7950 39 1 7.4757 -7.2115 2.9311 40 1 7.0771 -7.6755 1.2597 41 1 6.9566 -5.2396 0.9701 42 1 5.9381 -4.1721 3.7377 43 1 7.1430 -3.3270 2.6263 44 1 5.3950 -3.2489 0.7899 45 1 4.1898 -4.0939 1.9012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709977239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:26 Heat of formation + Delta-G solvation = -44.617841 kcal Electronic energy + Delta-G solvation = -21256.716280 eV Core-core repulsion = 18273.910920 eV Total energy + Delta-G solvation = -2982.805360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.57064 -36.83170 -35.98105 -34.68887 -32.61056 -30.54069 -30.12758 -27.49568 -26.19444 -23.16667 -22.40919 -22.09259 -21.50687 -21.35846 -20.09989 -19.69319 -16.37868 -15.97567 -15.73598 -15.14485 -15.00373 -14.49508 -14.43563 -14.10692 -14.00360 -13.58729 -13.25950 -13.00071 -12.77172 -12.56671 -12.12764 -11.72667 -11.58159 -11.20884 -11.18242 -11.13658 -10.80556 -10.78906 -10.71802 -10.63910 -10.55179 -10.31824 -10.26533 -9.92181 -9.65397 -9.28981 -9.02735 -8.73279 -8.07436 -7.83776 -6.04363 -4.04914 3.36984 3.39217 3.43616 4.22875 4.35774 4.41065 4.60048 4.71583 4.91406 4.95623 5.05264 5.14701 5.32325 5.35858 5.36914 5.41629 5.47738 5.58088 5.63140 5.66377 5.68726 5.74297 5.80360 5.89975 5.96607 5.98508 6.04520 6.07883 6.12681 6.15079 6.19437 6.24491 6.38182 6.44320 6.62245 6.84996 7.17570 7.27805 7.33626 7.50779 7.64184 7.87626 8.24131 8.69158 9.09810 9.59734 11.07341 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.004354 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.431525 B = 6429.581090 C = 7319.096073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.377 6.377 11 C 0.065 3.935 12 C 0.066 3.934 13 N -0.662 5.662 14 C 0.096 3.904 15 H 0.075 0.925 16 C -0.151 4.151 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.111 4.111 20 C -0.040 4.040 21 H 0.066 0.934 22 C -0.152 4.152 23 C -0.202 4.202 24 C -0.133 4.133 25 H 0.263 0.737 26 H 0.000 1.000 27 H 0.002 0.998 28 H 0.032 0.968 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.336 0.664 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.885 -17.901 4.585 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.296 6.296 11 C -0.013 4.013 12 C -0.063 4.063 13 N -0.291 5.291 14 C -0.014 4.014 15 H 0.093 0.907 16 C -0.190 4.190 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.059 4.059 21 H 0.085 0.915 22 C -0.170 4.170 23 C -0.239 4.239 24 C -0.170 4.170 25 H 0.073 0.927 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.331 -17.225 4.340 20.549 hybrid contribution -0.502 0.042 0.112 0.516 sum 9.829 -17.183 4.451 20.290 Atomic orbital electron populations 1.69953 1.06103 1.27097 1.50957 1.24933 0.94916 0.99338 0.95334 0.86437 0.79327 0.82108 0.78843 1.20092 1.21297 1.19991 1.21017 0.94042 0.89300 1.50237 0.91519 1.20155 0.88867 0.83993 0.94988 1.87957 1.34442 1.12209 1.94988 1.22227 0.93928 0.86488 0.98682 1.21984 0.95696 0.95354 0.93289 1.60646 1.15748 1.48593 1.04106 1.21581 0.92491 0.88003 0.99342 0.90710 1.22330 0.98314 0.96858 1.01491 1.21462 0.96097 0.97812 0.99885 1.21547 0.97762 0.97247 0.99163 1.21565 0.97858 0.94281 1.01244 1.20627 0.93908 0.92886 0.98484 0.91532 1.22026 1.03086 0.89944 1.01988 1.22976 1.03075 1.02189 0.95639 1.23200 0.98095 0.97151 0.98505 0.92744 0.98187 0.98024 0.94957 0.94479 0.95139 0.90515 0.84612 0.91920 0.92281 0.92449 0.92101 0.92138 0.92323 0.91908 0.92144 0.89482 0.89916 0.90288 0.89938 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.98 9.43 -34.44 -0.32 -15.30 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 5.33 5.69 36.01 0.20 5.54 16 10 O -0.38 -8.87 10.27 -35.23 -0.36 -9.24 16 11 C 0.07 1.17 6.22 37.16 0.23 1.40 16 12 C 0.07 0.95 5.87 -3.83 -0.02 0.92 16 13 N -0.66 -9.03 2.86 -106.73 -0.31 -9.33 16 14 C 0.10 1.10 1.91 -67.71 -0.13 0.97 16 15 H 0.07 0.92 7.80 -51.93 -0.41 0.52 16 16 C -0.15 -1.45 5.17 -26.73 -0.14 -1.59 16 17 C -0.11 -0.97 5.92 -26.73 -0.16 -1.13 16 18 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 19 C -0.11 -1.07 5.19 -26.74 -0.14 -1.21 16 20 C -0.04 -0.46 2.13 -90.63 -0.19 -0.65 16 21 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 22 C -0.15 -2.07 5.15 -90.62 -0.47 -2.53 16 23 C -0.20 -2.88 10.18 -26.73 -0.27 -3.16 16 24 C -0.13 -2.22 9.21 -26.73 -0.25 -2.46 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.37 7.44 -51.93 -0.39 -0.01 16 31 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.34 4.42 8.47 -39.29 -0.33 4.09 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 34 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 42 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.13 2.45 5.99 -51.93 -0.31 2.14 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -29.97 351.95 -10.09 -40.06 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.53 Total: 1.44 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.91 Total: -18.85 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.43 Total: -35.83 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.36 Total: -9.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.97 -10.09 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.557 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds