Wall clock time and date at job start Mon Mar 30 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.46904 * 111.00309 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.46743 * 34.99336 * 14 13 12 16 16 C 1.53000 * 109.46697 * 274.99788 * 14 13 12 17 17 C 1.53000 * 109.46883 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47399 * 59.99863 * 17 16 14 19 19 C 1.53000 * 109.46995 * 300.00256 * 18 17 16 20 20 C 1.52991 * 109.47376 * 59.99697 * 19 18 17 21 21 H 1.09002 * 109.47268 * 59.99999 * 20 19 18 22 22 C 1.53000 * 109.47376 * 179.97438 * 20 19 18 23 23 C 1.53000 * 117.50261 * 248.62140 * 22 20 19 24 24 C 1.53000 * 60.00140 * 252.51199 * 23 22 20 25 25 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 27 27 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 28 28 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 29 29 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 30 30 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 31 31 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 32 32 H 1.00896 * 111.00234 * 56.04077 * 13 12 11 33 33 H 1.08998 * 109.47154 * 299.99296 * 16 14 13 34 34 H 1.09001 * 109.47599 * 59.99877 * 16 14 13 35 35 H 1.09007 * 109.47368 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47294 * 299.99904 * 17 16 14 37 37 H 1.08998 * 109.47241 * 60.00103 * 18 17 16 38 38 H 1.08994 * 109.47545 * 180.02562 * 18 17 16 39 39 H 1.09006 * 109.47271 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.46923 * 299.99485 * 19 18 17 41 41 H 1.08999 * 115.54926 * 34.33126 * 22 20 19 42 42 H 1.09004 * 117.49577 * 0.02562 * 23 22 20 43 43 H 1.08997 * 117.49995 * 145.01803 * 23 22 20 44 44 H 1.09004 * 117.49297 * 252.51163 * 24 23 22 45 45 H 1.08992 * 117.49993 * 107.49113 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 6 4.4600 -6.9135 1.2892 15 1 4.8613 -7.0571 0.2860 16 6 3.8697 -8.2310 1.7957 17 6 4.9640 -9.2997 1.8318 18 6 6.0858 -8.8495 2.7696 19 6 6.6761 -7.5320 2.2631 20 6 5.5819 -6.4634 2.2271 21 1 5.1809 -6.3199 3.2305 22 6 6.1723 -5.1456 1.7212 23 6 6.2845 -3.9921 2.7200 24 6 5.2301 -3.9450 1.6123 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 0.9453 -4.9822 0.8903 29 1 0.9448 -4.9826 -0.8898 30 1 2.1822 -6.9374 -0.0898 31 1 3.3212 -5.7956 -0.8429 32 1 2.7978 -5.9691 2.0526 33 1 3.4684 -8.0875 2.7990 34 1 3.0707 -8.5520 1.1273 35 1 4.5436 -10.2383 2.1931 36 1 5.3650 -9.4432 0.8284 37 1 5.6850 -8.7061 3.7730 38 1 6.8656 -9.6106 2.7950 39 1 7.4757 -7.2115 2.9311 40 1 7.0771 -7.6755 1.2597 41 1 6.9566 -5.2396 0.9701 42 1 5.9381 -4.1721 3.7377 43 1 7.1430 -3.3270 2.6263 44 1 5.3950 -3.2489 0.7899 45 1 4.1898 -4.0939 1.9012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709977239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:25 Heat of formation + Delta-G solvation = -60.881827 kcal Electronic energy + Delta-G solvation = -21257.421539 eV Core-core repulsion = 18273.910920 eV Total energy + Delta-G solvation = -2983.510619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52340 -38.55471 -37.07604 -35.90353 -34.76951 -31.41046 -31.32268 -29.30037 -27.67106 -24.45329 -24.02473 -23.38254 -22.76695 -22.43731 -20.98528 -20.68769 -18.57452 -17.46213 -17.06192 -16.59826 -16.41567 -15.94545 -15.49649 -15.43021 -15.15232 -14.90483 -14.38571 -14.19040 -14.07779 -13.65318 -13.46783 -13.29172 -12.92924 -12.77797 -12.57443 -12.44235 -12.27141 -12.09072 -12.00802 -11.87501 -11.79915 -11.45123 -11.31842 -11.20873 -11.17681 -10.82151 -10.79293 -10.40523 -10.12439 -8.88072 -8.28786 -6.39521 1.39978 1.44659 1.52796 2.36658 3.05102 3.13411 3.25748 3.33035 3.72991 3.92891 4.09776 4.19191 4.26806 4.32107 4.33377 4.37352 4.48725 4.50820 4.57374 4.62771 4.67985 4.72513 4.74248 4.81383 4.88308 4.94135 4.98806 5.03943 5.09102 5.19872 5.24240 5.25901 5.29925 5.38976 5.44769 5.47388 5.50820 5.59790 5.63319 5.93350 6.02190 6.26759 6.56730 6.64026 6.92175 7.32509 8.83416 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.004354 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.431525 B = 6429.581090 C = 7319.096073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.387 6.387 11 C 0.056 3.944 12 C 0.080 3.920 13 N -0.678 5.678 14 C 0.100 3.900 15 H 0.068 0.932 16 C -0.144 4.144 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.107 4.107 20 C -0.036 4.036 21 H 0.062 0.938 22 C -0.132 4.132 23 C -0.193 4.193 24 C -0.159 4.159 25 H 0.269 0.731 26 H -0.020 1.020 27 H -0.018 1.018 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.338 0.662 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.246 -19.075 5.171 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.307 6.307 11 C -0.022 4.022 12 C -0.049 4.049 13 N -0.308 5.308 14 C -0.010 4.010 15 H 0.086 0.914 16 C -0.183 4.183 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.056 4.056 21 H 0.080 0.920 22 C -0.151 4.151 23 C -0.230 4.230 24 C -0.197 4.197 25 H 0.078 0.922 26 H -0.002 1.002 27 H -0.001 1.001 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.696 -18.431 4.926 22.378 hybrid contribution -0.955 0.344 -0.072 1.018 sum 10.741 -18.087 4.854 21.589 Atomic orbital electron populations 1.70061 1.07694 1.28502 1.50971 1.25898 0.95877 1.03182 0.94165 0.85317 0.78161 0.77142 0.79300 1.19145 1.20007 1.19155 1.21324 0.93961 0.90835 1.51516 0.92207 1.19746 0.88671 0.85155 0.92930 1.87932 1.34197 1.13566 1.94992 1.22572 0.95578 0.84903 0.99118 1.21817 0.94578 0.95112 0.93438 1.60585 1.16191 1.50243 1.03742 1.21555 0.91815 0.88484 0.99104 0.91370 1.22244 0.98709 0.95937 1.01412 1.21461 0.95664 0.97784 1.00137 1.21528 0.98081 0.96756 0.99017 1.21528 0.97149 0.94220 1.01623 1.20631 0.94518 0.92392 0.98012 0.91952 1.22121 1.01440 0.90204 1.01286 1.23029 1.01950 1.02531 0.95500 1.22940 0.98073 0.99445 0.99216 0.92193 1.00248 1.00067 0.94415 0.94042 0.91943 0.91543 0.84369 0.91819 0.92055 0.91225 0.91925 0.92071 0.90880 0.91478 0.91958 0.89101 0.89114 0.89631 0.92903 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.01 0.40 5.46 84.66 0.46 0.87 16 3 Si 0.98 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -32.71 9.43 25.60 0.24 -32.47 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.03 5.69 71.24 0.41 12.43 16 10 O -0.39 -18.97 10.27 -148.98 -1.53 -20.50 16 11 C 0.06 2.05 6.22 71.98 0.45 2.49 16 12 C 0.08 2.25 5.87 86.30 0.51 2.76 16 13 N -0.68 -18.29 2.86 -491.58 -1.40 -19.69 16 14 C 0.10 2.17 1.91 44.91 0.09 2.25 16 15 H 0.07 1.58 7.80 -2.39 -0.02 1.57 16 16 C -0.14 -2.44 5.17 30.59 0.16 -2.28 16 17 C -0.11 -1.58 5.92 30.59 0.18 -1.40 16 18 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 19 C -0.11 -1.80 5.19 30.59 0.16 -1.64 16 20 C -0.04 -0.79 2.13 -10.80 -0.02 -0.81 16 21 H 0.06 1.42 7.90 -2.39 -0.02 1.40 16 22 C -0.13 -3.51 5.15 -10.79 -0.06 -3.56 16 23 C -0.19 -5.43 10.18 30.59 0.31 -5.12 16 24 C -0.16 -5.51 9.21 30.60 0.28 -5.23 16 25 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 26 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 27 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.39 7.44 -2.39 -0.02 1.38 16 31 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 32 H 0.34 8.78 8.47 -89.70 -0.76 8.02 16 33 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 34 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 2.35 8.11 -2.39 -0.02 2.33 16 42 H 0.09 2.40 8.05 -2.38 -0.02 2.38 16 43 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.11 4.41 5.99 -2.39 -0.01 4.40 16 Total: -1.00 -65.65 351.95 2.89 -62.76 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.17 Total: 19.85 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 3.34 Total: -33.14 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.12 Total: -76.50 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.53 Total: -20.50 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.65 2.89 -62.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.880 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds