Wall clock time and date at job start Mon Mar 30 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48508 * 109.46877 * 239.99472 * 3 2 1 5 5 H 1.48495 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47096 * 119.99732 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46897 * 65.00566 * 12 11 10 14 14 C 1.46898 * 110.99888 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.47149 * 35.00177 * 14 13 12 16 16 C 1.52995 * 109.47098 * 274.99671 * 14 13 12 17 17 C 1.53003 * 109.47602 * 300.00231 * 16 14 13 18 18 C 1.53001 * 109.46987 * 300.00403 * 17 16 14 19 19 C 1.52995 * 109.47279 * 59.99398 * 18 17 16 20 20 C 1.52997 * 109.47303 * 300.00322 * 19 18 17 21 21 H 1.09006 * 109.46792 * 299.99791 * 20 19 18 22 22 C 1.53003 * 109.47169 * 180.02562 * 20 19 18 23 23 C 1.52997 * 117.50004 * 128.74466 * 22 20 19 24 24 C 1.53000 * 117.50234 * 60.08310 * 22 20 19 25 25 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 27 27 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 28 28 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 29 29 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 30 30 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 31 31 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 32 32 H 1.00902 * 110.99923 * 303.95801 * 13 12 11 33 33 H 1.09000 * 109.47371 * 60.00269 * 16 14 13 34 34 H 1.09002 * 109.47594 * 180.02562 * 16 14 13 35 35 H 1.08994 * 109.47636 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47120 * 59.99769 * 17 16 14 37 37 H 1.09002 * 109.46673 * 299.99640 * 18 17 16 38 38 H 1.08996 * 109.46989 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47371 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47071 * 60.00485 * 19 18 17 41 41 H 1.09008 * 115.54698 * 274.41313 * 22 20 19 42 42 H 1.08996 * 117.50098 * 359.97438 * 23 22 20 43 43 H 1.09009 * 117.49643 * 145.02179 * 23 22 20 44 44 H 1.09003 * 117.49984 * 214.98195 * 24 22 20 45 45 H 1.09005 * 117.49621 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 7 3.4088 -5.8878 1.2552 14 6 4.4595 -6.9138 1.2903 15 1 4.8609 -7.0573 0.2872 16 6 3.8691 -8.2312 1.7969 17 6 3.3058 -8.0297 3.2051 18 6 4.4272 -7.5792 4.1433 19 6 5.0176 -6.2618 3.6368 20 6 5.5809 -6.4633 2.2286 21 1 6.3606 -7.2246 2.2548 22 6 6.1719 -5.1460 1.7224 23 6 7.5990 -5.1773 1.1718 24 6 7.3159 -4.5286 2.5291 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 0.9446 -4.9827 -0.8887 29 1 0.9451 -4.9822 0.8913 30 1 3.3209 -5.7958 -0.8418 31 1 2.1818 -6.9376 -0.0887 32 1 3.7974 -4.9668 1.3926 33 1 3.0702 -8.5522 1.1284 34 1 4.6488 -8.9925 1.8234 35 1 2.8848 -8.9682 3.5657 36 1 2.5261 -7.2684 3.1790 37 1 5.2069 -8.3405 4.1694 38 1 4.0258 -7.4353 5.1464 39 1 5.8168 -5.9410 4.3050 40 1 4.2379 -5.5005 3.6107 41 1 5.4647 -4.4646 1.2492 42 1 8.1171 -6.1362 1.1707 43 1 7.8309 -4.5161 0.3367 44 1 7.3617 -3.4410 2.5864 45 1 7.6473 -5.0607 3.4208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709977240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:28 Heat of formation + Delta-G solvation = -66.537867 kcal Electronic energy + Delta-G solvation = -21189.410350 eV Core-core repulsion = 18205.654466 eV Total energy + Delta-G solvation = -2983.755884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67438 -38.69766 -37.33118 -35.55044 -34.73815 -31.46460 -31.28118 -29.42831 -27.83883 -24.58246 -24.42337 -23.58008 -22.92696 -22.43366 -21.08269 -19.82421 -18.66792 -17.60669 -17.28287 -16.76429 -16.53737 -16.27660 -15.68222 -15.48107 -15.10386 -14.94488 -14.54040 -14.08332 -13.97308 -13.48993 -13.33891 -13.18303 -13.08861 -12.84662 -12.74242 -12.54444 -12.39603 -12.35560 -12.24341 -11.85524 -11.80722 -11.43291 -11.30955 -11.26637 -11.11380 -10.88842 -10.78049 -10.52174 -10.23952 -9.21605 -8.33027 -6.45626 1.38305 1.42990 1.51427 2.33220 2.89819 3.00776 3.20835 3.29110 3.63498 3.80243 3.99284 4.10562 4.18465 4.21603 4.26117 4.35875 4.43484 4.54732 4.58953 4.61895 4.66818 4.72034 4.77580 4.79754 4.82039 4.82623 4.92838 4.96389 5.01828 5.12016 5.15845 5.19319 5.26960 5.32827 5.40910 5.45659 5.50096 5.52874 5.53272 5.75394 5.94581 6.23914 6.49843 6.52624 6.80351 7.26236 8.79185 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.004651 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.052703 B = 6018.894179 C = 6869.142061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.213 3.787 10 O -0.408 6.408 11 C 0.056 3.944 12 C 0.077 3.923 13 N -0.683 5.683 14 C 0.092 3.908 15 H 0.038 0.962 16 C -0.101 4.101 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.105 4.105 20 C -0.044 4.044 21 H 0.087 0.913 22 C -0.169 4.169 23 C -0.173 4.173 24 C -0.173 4.173 25 H 0.271 0.729 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.027 0.973 31 H 0.101 0.899 32 H 0.342 0.658 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.531 -16.958 5.589 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.138 3.862 10 O -0.328 6.328 11 C -0.022 4.022 12 C -0.053 4.053 13 N -0.317 5.317 14 C -0.017 4.017 15 H 0.056 0.944 16 C -0.139 4.139 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.063 4.063 21 H 0.106 0.894 22 C -0.187 4.187 23 C -0.210 4.210 24 C -0.210 4.210 25 H 0.080 0.920 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.119 0.881 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.115 -17.200 5.935 21.859 hybrid contribution 0.069 1.490 -0.879 1.731 sum 12.184 -15.710 5.056 20.514 Atomic orbital electron populations 1.70065 1.07779 1.28705 1.50404 1.25947 0.95930 1.03338 0.93889 0.85257 0.78135 0.76821 0.79347 1.19040 1.19911 1.19021 1.21332 0.93994 0.90818 1.52366 0.92091 1.19769 0.88557 0.84658 0.93258 1.87751 1.35489 1.14339 1.95190 1.22591 0.96134 0.83926 0.99501 1.21916 0.94947 0.97418 0.90984 1.60609 1.27916 1.08837 1.34337 1.21531 0.90353 0.92645 0.97189 0.94435 1.21505 1.00241 0.95274 0.96925 1.21372 0.98188 1.00651 0.94586 1.21467 0.98152 0.96776 0.98458 1.21437 0.99812 0.98021 0.94975 1.20808 0.96248 0.94361 0.94866 0.89429 1.22369 0.91515 0.99599 1.05241 1.23064 0.97697 1.03108 0.97157 1.22951 1.02226 1.00154 0.95627 0.92036 0.99859 0.99870 0.93664 0.93986 0.95458 0.88127 0.83756 0.92379 0.90611 0.91943 0.92785 0.91213 0.92229 0.91832 0.93348 0.90391 0.87307 0.89498 0.89581 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.23 5.69 71.24 0.41 12.64 16 10 O -0.41 -20.20 9.85 -148.98 -1.47 -21.67 16 11 C 0.06 2.15 6.28 71.98 0.45 2.60 16 12 C 0.08 2.33 5.90 86.30 0.51 2.84 16 13 N -0.68 -20.10 4.82 -491.58 -2.37 -22.47 16 14 C 0.09 2.13 2.30 44.91 0.10 2.24 16 15 H 0.04 0.90 7.80 -2.39 -0.02 0.88 16 16 C -0.10 -1.97 5.53 30.59 0.17 -1.80 16 17 C -0.11 -2.23 5.77 30.60 0.18 -2.06 16 18 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 19 C -0.10 -2.27 4.89 30.59 0.15 -2.12 16 20 C -0.04 -0.93 2.11 -10.79 -0.02 -0.95 16 21 H 0.09 1.56 7.90 -2.38 -0.02 1.54 16 22 C -0.17 -4.07 4.83 -10.79 -0.05 -4.13 16 23 C -0.17 -3.54 10.18 30.62 0.31 -3.23 16 24 C -0.17 -3.65 9.74 30.62 0.30 -3.35 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 0.85 8.06 -2.39 -0.02 0.84 16 31 H 0.10 2.51 7.43 -2.39 -0.02 2.50 16 32 H 0.34 11.78 5.61 -89.69 -0.50 11.28 16 33 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.38 7.60 -2.39 -0.02 1.36 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.25 7.29 -2.39 -0.02 1.23 16 40 H 0.05 1.33 7.48 -2.39 -0.02 1.31 16 41 H 0.08 2.41 6.32 -2.38 -0.02 2.39 16 42 H 0.11 1.81 8.05 -2.39 -0.02 1.79 16 43 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.11 1.92 7.61 -2.38 -0.02 1.90 16 Total: -1.00 -64.62 348.99 2.29 -62.33 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.43 Total: 22.51 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.39 Total: -31.14 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.09 Total: -78.88 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.47 Total: -21.67 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.62 2.29 -62.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.212 kcal (2) G-P(sol) polarization free energy of solvation -64.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds