Wall clock time and date at job start Mon Mar 30 2020 07:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 110.55606 * 2 1 4 4 C 1.54993 * 110.62082 * 122.88609 * 2 1 3 5 5 C 1.54808 * 102.09538 * 81.47362 * 4 2 1 6 6 H 1.09008 * 110.48820 * 262.20531 * 5 4 2 7 7 C 1.53004 * 110.48689 * 139.56211 * 5 4 2 8 8 N 1.46497 * 109.47385 * 70.23129 * 7 5 4 9 9 C 1.36934 * 120.00110 * 269.99683 * 8 7 5 10 10 H 1.08002 * 119.99797 * 137.88164 * 9 8 7 11 11 C 1.38814 * 119.99951 * 317.88944 * 9 8 7 12 12 N 1.31618 * 119.99813 * 159.71534 * 11 9 8 13 13 Si 1.86795 * 120.00200 * 339.71464 * 11 9 8 14 14 H 1.48502 * 109.47162 * 95.39233 * 13 11 9 15 15 H 1.48493 * 109.47093 * 215.39816 * 13 11 9 16 16 H 1.48506 * 109.47042 * 335.39579 * 13 11 9 17 17 C 1.46501 * 119.99863 * 89.99746 * 8 7 5 18 18 C 1.52998 * 117.49940 * 192.25788 * 17 8 7 19 19 C 1.53005 * 117.49609 * 123.59939 * 17 8 7 20 20 C 1.54098 * 104.18950 * 20.88357 * 5 4 2 21 21 C 1.52994 * 109.88059 * 121.45480 * 20 5 4 22 22 C 1.52998 * 109.87828 * 242.46096 * 20 5 4 23 23 O 1.43745 * 107.41800 * 1.95489 * 20 5 4 24 24 H 1.09004 * 109.46784 * 310.19471 * 1 2 3 25 25 H 1.09003 * 109.47125 * 70.19410 * 1 2 3 26 26 H 1.08996 * 109.47363 * 190.19722 * 1 2 3 27 27 H 1.09003 * 109.47806 * 182.88114 * 3 2 1 28 28 H 1.09006 * 109.47316 * 302.88373 * 3 2 1 29 29 H 1.09007 * 109.47092 * 62.88366 * 3 2 1 30 30 H 1.09000 * 110.90532 * 323.27059 * 4 2 1 31 31 H 1.09001 * 110.93831 * 199.68667 * 4 2 1 32 32 H 1.09002 * 109.46724 * 190.23475 * 7 5 4 33 33 H 1.08996 * 109.46821 * 310.22494 * 7 5 4 34 34 H 0.97004 * 120.00358 * 180.02562 * 12 11 9 35 35 H 1.09000 * 115.54842 * 337.93677 * 17 8 7 36 36 H 1.09004 * 117.49835 * 0.02562 * 18 17 8 37 37 H 1.08998 * 117.50105 * 145.02300 * 18 17 8 38 38 H 1.09000 * 117.50086 * 214.97978 * 19 17 8 39 39 H 1.09003 * 117.49582 * 0.02562 * 19 17 8 40 40 H 1.09008 * 109.46848 * 180.30729 * 21 20 5 41 41 H 1.08993 * 109.47090 * 60.30870 * 21 20 5 42 42 H 1.08997 * 109.47066 * 300.30240 * 21 20 5 43 43 H 1.09004 * 109.46937 * 287.14214 * 22 20 5 44 44 H 1.08997 * 109.47455 * 47.13626 * 22 20 5 45 45 H 1.08999 * 109.47295 * 167.14496 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4325 0.0000 4 6 2.0758 -0.7876 1.2182 5 6 1.9800 -2.2525 0.7267 6 1 1.0717 -2.7228 1.1036 7 6 3.2147 -3.0449 1.1610 8 7 3.1797 -3.2475 2.6114 9 6 3.7591 -2.3287 3.4453 10 1 3.2567 -2.0320 4.3541 11 6 4.9919 -1.7785 3.1223 12 7 5.3691 -0.6423 3.6692 13 14 6.1157 -2.6507 1.9116 14 1 5.9144 -2.0849 0.5534 15 1 7.5297 -2.4598 2.3229 16 1 5.7961 -4.1009 1.8961 17 6 2.5250 -4.4331 3.1699 18 6 2.2658 -4.4527 4.6776 19 6 3.3595 -5.3395 4.0771 20 6 1.9283 -2.1331 -0.8088 21 6 3.0941 -2.9049 -1.4302 22 6 0.6009 -2.6880 -1.3293 23 8 2.0364 -0.7376 -1.1358 24 1 -0.3633 0.6633 0.7850 25 1 -0.3633 0.3482 -0.9669 26 1 -0.3634 -1.0114 0.1819 27 1 3.1558 1.4125 -0.0517 28 1 1.6723 1.9687 -0.8630 29 1 1.7562 1.9372 0.9148 30 1 1.4490 -0.6300 2.0959 31 1 3.1101 -0.5143 1.4270 32 1 3.2206 -4.0124 0.6590 33 1 4.1145 -2.4912 0.8930 34 1 6.2304 -0.2575 3.4432 35 1 1.7855 -4.9090 2.5258 36 1 2.5821 -3.5833 5.2540 37 1 1.3560 -4.9418 5.0256 38 1 3.1687 -6.4117 4.0302 39 1 4.3955 -5.0534 4.2587 40 1 3.0542 -2.8115 -2.5155 41 1 3.0223 -3.9566 -1.1532 42 1 4.0362 -2.4963 -1.0648 43 1 0.6064 -3.7753 -1.2521 44 1 -0.2192 -2.2858 -0.7347 45 1 0.4699 -2.3985 -2.3720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711275563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:08 Heat of formation + Delta-G solvation = -16.658732 kcal Electronic energy + Delta-G solvation = -22844.690335 eV Core-core repulsion = 19863.097373 eV Total energy + Delta-G solvation = -2981.592962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48306 -38.81478 -35.90880 -35.01616 -33.90057 -32.55794 -30.47798 -29.11929 -27.71177 -27.19236 -25.39832 -23.47222 -22.95344 -21.53692 -21.10673 -20.22563 -18.34201 -17.42359 -17.07009 -16.52253 -16.38772 -15.78862 -15.68303 -15.33974 -14.59607 -14.48908 -14.10184 -14.02547 -13.77899 -13.68695 -13.50468 -13.12934 -13.02824 -12.89979 -12.80603 -12.71817 -12.63873 -12.45919 -12.09331 -12.05061 -11.87911 -11.62891 -11.52436 -11.22248 -11.15085 -11.12762 -10.92763 -10.60777 -10.45885 -8.48669 -8.18500 -5.59214 1.25548 1.35132 1.44958 2.39633 2.85914 3.02377 3.20795 3.39427 3.73946 3.88164 3.96541 4.04241 4.16219 4.18410 4.31354 4.36216 4.43942 4.48800 4.55559 4.62017 4.65016 4.72250 4.76370 4.79287 4.87054 4.87969 4.95051 4.96796 5.00340 5.04415 5.10215 5.16738 5.27027 5.30033 5.35535 5.37148 5.39831 5.47414 5.56683 5.57686 5.98459 6.22568 6.26040 7.05009 7.66371 8.09115 8.99633 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.008615 C = 0.007686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.976292 B = 3249.456634 C = 3642.244089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.090 3.910 3 C -0.135 4.135 4 C -0.111 4.111 5 C -0.115 4.115 6 H 0.088 0.912 7 C 0.146 3.854 8 N -0.584 5.584 9 C -0.232 4.232 10 H 0.044 0.956 11 C -0.004 4.004 12 N -0.942 5.942 13 Si 0.918 3.082 14 H -0.280 1.280 15 H -0.314 1.314 16 H -0.256 1.256 17 C 0.110 3.890 18 C -0.190 4.190 19 C -0.217 4.217 20 C 0.098 3.902 21 C -0.149 4.149 22 C -0.158 4.158 23 O -0.383 6.383 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.259 0.741 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.033 0.967 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -5.004 -9.572 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 C -0.192 4.192 4 C -0.149 4.149 5 C -0.136 4.136 6 H 0.107 0.893 7 C 0.022 3.978 8 N -0.303 5.303 9 C -0.363 4.363 10 H 0.061 0.939 11 C -0.201 4.201 12 N -0.586 5.586 13 Si 0.748 3.252 14 H -0.208 1.208 15 H -0.243 1.243 16 H -0.180 1.180 17 C 0.002 3.998 18 C -0.228 4.228 19 C -0.257 4.257 20 C 0.058 3.942 21 C -0.206 4.206 22 C -0.215 4.215 23 O -0.303 6.303 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.070 -4.791 -9.777 15.527 hybrid contribution 1.442 0.161 0.270 1.476 sum -9.629 -4.630 -9.506 14.301 Atomic orbital electron populations 1.22325 0.92946 1.03231 1.02926 1.22669 0.94682 0.92609 0.84883 1.21712 1.00474 0.94088 1.02914 1.22828 1.00383 0.94810 0.96907 1.23009 1.00263 0.96490 0.93831 0.89348 1.21435 0.95492 0.97806 0.83095 1.43817 1.64115 1.20885 1.01526 1.18358 0.98384 1.14874 1.04646 0.93868 1.25955 0.98059 0.96811 0.99285 1.69945 1.22137 1.18502 1.47993 0.86207 0.78139 0.81345 0.79517 1.20774 1.24301 1.17970 1.21513 0.97829 0.89440 0.91003 1.23054 1.00244 1.01716 0.97815 1.23317 0.95897 0.97366 1.09149 1.22199 0.96531 0.82123 0.93338 1.22051 0.96752 1.00415 1.01396 1.22423 0.95392 1.01864 1.01813 1.88878 1.84724 1.17304 1.39426 0.91032 0.91051 0.91092 0.94255 0.90628 0.90644 0.92080 0.94002 0.91353 0.95047 0.93189 0.85300 0.91657 0.87068 0.87301 0.92543 0.91101 0.89388 0.94741 0.90215 0.91144 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 8.16 71.98 0.59 -3.38 16 2 C 0.09 2.94 1.25 -10.11 -0.01 2.93 16 3 C -0.13 -4.21 9.00 71.98 0.65 -3.57 16 4 C -0.11 -4.40 4.84 31.89 0.15 -4.24 16 5 C -0.12 -4.01 2.42 -9.80 -0.02 -4.03 16 6 H 0.09 2.82 7.65 -2.38 -0.02 2.80 16 7 C 0.15 5.85 2.75 86.38 0.24 6.09 16 8 N -0.58 -25.91 2.32 -678.03 -1.57 -27.48 16 9 C -0.23 -12.55 7.85 84.03 0.66 -11.89 16 10 H 0.04 2.63 6.75 -2.91 -0.02 2.61 16 11 C 0.00 -0.24 5.02 84.86 0.43 0.19 16 12 N -0.94 -58.16 13.97 21.65 0.30 -57.86 16 13 Si 0.92 46.61 25.13 68.60 1.72 48.34 16 14 H -0.28 -13.97 6.72 99.48 0.67 -13.30 16 15 H -0.31 -16.42 7.11 99.48 0.71 -15.71 16 16 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 17 C 0.11 4.02 6.59 44.99 0.30 4.32 16 18 C -0.19 -6.80 9.85 30.62 0.30 -6.50 16 19 C -0.22 -7.79 10.21 30.62 0.31 -7.48 16 20 C 0.10 2.98 1.14 -10.42 -0.01 2.97 16 21 C -0.15 -4.41 7.66 71.98 0.55 -3.86 16 22 C -0.16 -3.59 8.26 71.98 0.59 -3.00 16 23 O -0.38 -13.25 10.37 -148.98 -1.55 -14.80 16 24 H 0.07 1.66 8.13 -2.38 -0.02 1.64 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.70 4.92 -2.39 -0.01 1.69 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.06 2.48 8.05 -2.39 -0.02 2.46 16 31 H 0.04 2.06 7.07 -2.39 -0.02 2.04 16 32 H 0.07 2.38 6.35 -2.39 -0.02 2.37 16 33 H 0.03 1.46 2.57 -2.39 -0.01 1.46 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 36 H 0.06 2.82 6.43 -2.39 -0.02 2.80 16 37 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.09 2.22 6.74 -2.39 -0.02 2.20 16 42 H 0.03 1.22 6.84 -2.39 -0.02 1.20 16 43 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 44 H 0.07 1.52 5.08 -2.39 -0.01 1.51 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.75 332.14 4.54 -60.21 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.91 Total: 23.04 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 4.72 Total: -31.45 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.27 Total: -85.34 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.55 Total: -14.80 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.72 Total: 48.34 kcal Total: -64.75 4.54 -60.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711275563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.548 kcal (2) G-P(sol) polarization free energy of solvation -64.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds