Wall clock time and date at job start Mon Mar 30 2020 07:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.35337 * 2 1 4 4 C 1.54942 * 110.31204 * 122.14151 * 2 1 3 5 5 C 1.55301 * 100.94346 * 155.35885 * 4 2 1 6 6 H 1.08999 * 110.84878 * 84.26458 * 5 4 2 7 7 C 1.53000 * 110.84840 * 207.67620 * 5 4 2 8 8 N 1.46497 * 109.47653 * 293.54586 * 7 5 4 9 9 C 1.36930 * 120.00203 * 270.00331 * 8 7 5 10 10 H 1.08000 * 120.00490 * 141.46129 * 9 8 7 11 11 C 1.38812 * 120.00276 * 321.46221 * 9 8 7 12 12 N 1.31621 * 120.00732 * 156.49014 * 11 9 8 13 13 Si 1.86808 * 119.99533 * 336.48937 * 11 9 8 14 14 H 1.48505 * 109.46702 * 95.38692 * 13 11 9 15 15 H 1.48501 * 109.47228 * 215.38549 * 13 11 9 16 16 H 1.48493 * 109.47302 * 335.38820 * 13 11 9 17 17 C 1.46499 * 119.99969 * 89.99695 * 8 7 5 18 18 C 1.53001 * 117.50125 * 166.87930 * 17 8 7 19 19 C 1.52997 * 117.49939 * 235.54083 * 17 8 7 20 20 C 1.54379 * 102.25442 * 325.87036 * 5 4 2 21 21 C 1.52996 * 109.83099 * 140.87090 * 20 5 4 22 22 C 1.53006 * 109.82757 * 261.84319 * 20 5 4 23 23 O 1.43234 * 107.58813 * 21.35094 * 20 5 4 24 24 H 1.09003 * 109.46806 * 297.86067 * 1 2 3 25 25 H 1.09001 * 109.47308 * 57.85514 * 1 2 3 26 26 H 1.08998 * 109.47043 * 177.85862 * 1 2 3 27 27 H 1.08998 * 109.47102 * 182.14651 * 3 2 1 28 28 H 1.09006 * 109.46871 * 302.14333 * 3 2 1 29 29 H 1.08995 * 109.47638 * 62.14628 * 3 2 1 30 30 H 1.09000 * 111.12693 * 37.43884 * 4 2 1 31 31 H 1.08999 * 111.12833 * 273.28030 * 4 2 1 32 32 H 1.09005 * 109.47243 * 173.54250 * 7 5 4 33 33 H 1.09004 * 109.47190 * 53.54792 * 7 5 4 34 34 H 0.96997 * 120.00353 * 180.02562 * 12 11 9 35 35 H 1.08998 * 115.54942 * 21.21071 * 17 8 7 36 36 H 1.08997 * 117.50060 * 215.00612 * 18 17 8 37 37 H 1.08997 * 117.49768 * 0.02720 * 18 17 8 38 38 H 1.08995 * 117.50303 * 359.97438 * 19 17 8 39 39 H 1.09007 * 117.49589 * 144.97507 * 19 17 8 40 40 H 1.08997 * 109.47396 * 59.99989 * 21 20 5 41 41 H 1.09001 * 109.46766 * 180.02562 * 21 20 5 42 42 H 1.08996 * 109.46931 * 299.99423 * 21 20 5 43 43 H 1.08998 * 109.46965 * 59.99880 * 22 20 5 44 44 H 1.09004 * 109.46825 * 179.97438 * 22 20 5 45 45 H 1.08996 * 109.47419 * 299.99490 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4345 0.0000 4 6 2.0679 -0.7731 1.2304 5 6 3.4699 -1.2025 0.7189 6 1 4.1982 -0.4054 0.8682 7 6 3.9285 -2.4911 1.4046 8 7 4.1486 -2.2343 2.8300 9 6 5.3809 -1.8320 3.2709 10 1 5.4594 -1.0927 4.0543 11 6 6.5295 -2.3745 2.7112 12 7 7.6649 -1.7109 2.7655 13 14 6.4638 -4.0465 1.8806 14 1 6.2733 -3.8659 0.4190 15 1 7.7354 -4.7725 2.1282 16 1 5.3305 -4.8301 2.4344 17 6 3.0501 -2.4077 3.7836 18 6 3.4033 -2.4277 5.2722 19 6 2.6897 -1.2144 4.6707 20 6 3.2113 -1.4419 -0.7841 21 6 4.3991 -0.9325 -1.6028 22 6 3.0024 -2.9353 -1.0434 23 8 2.0286 -0.7168 -1.1406 24 1 -0.3633 0.4803 0.9086 25 1 -0.3634 0.5468 -0.8701 26 1 -0.3633 -1.0269 -0.0384 27 1 3.1513 1.4180 -0.0385 28 1 1.6759 1.9653 -0.8702 29 1 1.7384 1.9422 0.9085 30 1 1.4471 -1.6415 1.4508 31 1 2.1497 -0.1203 2.0995 32 1 4.8578 -2.8340 0.9495 33 1 3.1623 -3.2575 1.2875 34 1 8.4674 -2.0898 2.3740 35 1 2.2359 -3.0514 3.4509 36 1 2.8215 -3.0847 5.9187 37 1 4.4529 -2.3115 5.5419 38 1 3.2702 -0.3004 4.5452 39 1 1.6383 -1.0729 4.9213 40 1 5.3018 -1.4650 -1.3035 41 1 4.2102 -1.1039 -2.6625 42 1 4.5313 0.1349 -1.4258 43 1 2.1448 -3.2871 -0.4698 44 1 2.8198 -3.0975 -2.1057 45 1 3.8931 -3.4850 -0.7393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711275570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:11 Heat of formation + Delta-G solvation = -22.618380 kcal Electronic energy + Delta-G solvation = -22794.922756 eV Core-core repulsion = 19813.071364 eV Total energy + Delta-G solvation = -2981.851392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44202 -38.82873 -36.01420 -35.00781 -34.06374 -32.52146 -30.36710 -28.77286 -27.89765 -27.14124 -25.82248 -23.41331 -22.94514 -21.54146 -21.35116 -20.11269 -18.37007 -17.37704 -17.00021 -16.66963 -16.43615 -15.76235 -15.39662 -15.13329 -14.83934 -14.49141 -14.28703 -13.97538 -13.89729 -13.59093 -13.51373 -13.09409 -12.99746 -12.83075 -12.75377 -12.70136 -12.62543 -12.51937 -12.34704 -12.18047 -11.93171 -11.84442 -11.53586 -11.33714 -11.27467 -11.09005 -10.82407 -10.55863 -10.41718 -8.55394 -8.20772 -5.57375 1.27541 1.39786 1.50271 2.40604 2.77788 2.96970 3.18040 3.41786 3.67198 3.86581 3.92858 4.05565 4.15383 4.19404 4.27730 4.29935 4.40776 4.49768 4.51713 4.58538 4.65061 4.70420 4.79313 4.84574 4.86732 4.87906 4.93847 4.96796 4.97203 5.02371 5.07957 5.09982 5.20673 5.23226 5.29102 5.35983 5.37319 5.42956 5.51864 5.57273 5.94361 6.19966 6.29989 7.01209 7.65503 8.05974 8.98638 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.008829 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.581673 B = 3170.709955 C = 4002.513702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.093 3.907 3 C -0.157 4.157 4 C -0.115 4.115 5 C -0.118 4.118 6 H 0.051 0.949 7 C 0.151 3.849 8 N -0.581 5.581 9 C -0.245 4.245 10 H 0.039 0.961 11 C -0.014 4.014 12 N -0.945 5.945 13 Si 0.929 3.071 14 H -0.270 1.270 15 H -0.311 1.311 16 H -0.257 1.257 17 C 0.112 3.888 18 C -0.200 4.200 19 C -0.199 4.199 20 C 0.106 3.894 21 C -0.150 4.150 22 C -0.151 4.151 23 O -0.375 6.375 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.261 0.739 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 0.028 -5.921 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 C -0.215 4.215 4 C -0.152 4.152 5 C -0.139 4.139 6 H 0.070 0.930 7 C 0.027 3.973 8 N -0.300 5.300 9 C -0.375 4.375 10 H 0.056 0.944 11 C -0.211 4.211 12 N -0.589 5.589 13 Si 0.757 3.243 14 H -0.197 1.197 15 H -0.240 1.240 16 H -0.181 1.181 17 C 0.004 3.996 18 C -0.239 4.239 19 C -0.239 4.239 20 C 0.066 3.934 21 C -0.208 4.208 22 C -0.208 4.208 23 O -0.296 6.296 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.332 0.010 -6.177 16.529 hybrid contribution 1.348 -0.346 0.099 1.395 sum -13.984 -0.336 -6.078 15.252 Atomic orbital electron populations 1.21796 0.91224 1.02948 1.03058 1.22496 0.95507 0.91595 0.84973 1.22165 1.00519 0.96020 1.02758 1.23103 0.94416 1.00248 0.97443 1.23068 0.97769 0.99662 0.93425 0.93040 1.21293 0.98244 0.94733 0.83068 1.43745 1.06866 1.78011 1.01379 1.18393 0.82638 1.16530 1.19972 0.94366 1.26001 0.94775 1.00329 0.99981 1.70004 1.01465 1.38492 1.48906 0.86059 0.76457 0.83026 0.78726 1.19662 1.24020 1.18073 1.21365 0.92569 0.98970 0.86647 1.23139 1.00399 1.02501 0.97826 1.23261 1.00194 0.93036 1.07445 1.21995 0.85504 0.92518 0.93334 1.22072 0.96967 1.00974 1.00765 1.22116 1.02128 0.93774 1.02794 1.88372 1.41942 1.64181 1.35056 0.89912 0.91696 0.91797 0.94341 0.91424 0.90747 0.90042 0.90807 0.94774 0.91189 0.92949 0.86130 0.87319 0.91652 0.92259 0.87074 0.92998 0.90922 0.93039 0.91155 0.91098 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.95 71.98 0.64 -2.08 16 2 C 0.09 2.49 1.21 -10.13 -0.01 2.48 16 3 C -0.16 -4.12 8.84 71.98 0.64 -3.49 16 4 C -0.11 -3.41 4.53 32.05 0.15 -3.26 16 5 C -0.12 -4.27 2.32 -9.54 -0.02 -4.29 16 6 H 0.05 2.24 7.55 -2.39 -0.02 2.22 16 7 C 0.15 6.02 2.77 86.38 0.24 6.26 16 8 N -0.58 -25.79 2.33 -678.04 -1.58 -27.37 16 9 C -0.25 -13.44 8.48 84.03 0.71 -12.73 16 10 H 0.04 2.37 7.43 -2.91 -0.02 2.35 16 11 C -0.01 -0.81 5.27 84.86 0.45 -0.36 16 12 N -0.94 -58.46 13.97 21.65 0.30 -58.16 16 13 Si 0.93 45.13 25.18 68.60 1.73 46.86 16 14 H -0.27 -12.35 6.66 99.48 0.66 -11.69 16 15 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 17 C 0.11 4.08 5.73 44.99 0.26 4.34 16 18 C -0.20 -7.23 9.81 30.62 0.30 -6.93 16 19 C -0.20 -6.70 9.88 30.62 0.30 -6.40 16 20 C 0.11 3.40 1.21 -10.32 -0.01 3.39 16 21 C -0.15 -4.85 8.75 71.98 0.63 -4.22 16 22 C -0.15 -4.31 7.61 71.98 0.55 -3.76 16 23 O -0.38 -11.44 10.04 -148.98 -1.50 -12.93 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.17 7.31 -2.39 -0.02 1.15 16 28 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.22 7.93 -2.39 -0.02 2.20 16 31 H 0.07 2.32 7.79 -2.39 -0.02 2.30 16 32 H 0.03 1.53 2.93 -2.38 -0.01 1.52 16 33 H 0.07 2.43 6.49 -2.38 -0.02 2.41 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.12 3.66 8.10 -2.39 -0.02 3.64 16 36 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.06 2.87 6.93 -2.39 -0.02 2.85 16 38 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 39 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.69 7.92 -2.39 -0.02 1.67 16 43 H 0.07 1.84 7.52 -2.39 -0.02 1.82 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.77 6.67 -2.39 -0.02 1.76 16 Total: -1.00 -63.34 340.14 4.66 -58.68 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.89 Total: 23.99 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.82 Total: -31.07 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.28 Total: -85.53 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.50 Total: -12.93 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.73 Total: 46.86 kcal Total: -63.34 4.66 -58.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711275570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.061 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds