Wall clock time and date at job start Mon Mar 30 2020 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.52382 * 2 1 4 4 C 1.53179 * 109.52347 * 120.12254 * 2 1 3 5 5 C 1.53174 * 109.03909 * 176.88672 * 4 2 1 6 6 C 1.53091 * 109.16204 * 303.02095 * 5 4 2 7 7 H 1.09001 * 109.48168 * 297.61048 * 6 5 4 8 8 C 1.53007 * 109.47550 * 177.59041 * 6 5 4 9 9 N 1.46902 * 109.46709 * 179.97438 * 8 6 5 10 10 C 1.46902 * 110.99828 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47175 * 185.08680 * 10 9 8 12 12 C 1.50697 * 115.54725 * 35.91712 * 11 10 9 13 13 H 1.07997 * 120.00348 * 264.56201 * 12 11 10 14 14 C 1.37884 * 119.99944 * 84.56043 * 12 11 10 15 15 N 1.31513 * 120.00053 * 351.78170 * 14 12 11 16 16 Si 1.86803 * 120.00122 * 171.78895 * 14 12 11 17 17 H 1.48501 * 109.46988 * 89.99513 * 16 14 12 18 18 H 1.48494 * 109.47126 * 209.99949 * 16 14 12 19 19 H 1.48502 * 109.46988 * 329.99934 * 16 14 12 20 20 C 1.52995 * 117.49942 * 250.21164 * 11 10 9 21 21 C 1.52997 * 117.49838 * 181.58776 * 11 10 9 22 22 O 1.42901 * 109.41640 * 57.61088 * 6 5 4 23 23 C 1.42897 * 114.09435 * 298.83656 * 22 6 5 24 24 H 1.08997 * 109.47465 * 299.87788 * 1 2 3 25 25 H 1.09007 * 109.46947 * 59.87647 * 1 2 3 26 26 H 1.09001 * 109.46967 * 179.87011 * 1 2 3 27 27 H 1.08999 * 109.47333 * 180.12319 * 3 2 1 28 28 H 1.09002 * 109.46778 * 300.12275 * 3 2 1 29 29 H 1.08998 * 109.46898 * 60.12046 * 3 2 1 30 30 H 1.09003 * 109.53827 * 57.01702 * 4 2 1 31 31 H 1.09002 * 109.54139 * 296.76086 * 4 2 1 32 32 H 1.09000 * 109.52269 * 183.11609 * 5 4 2 33 33 H 1.08998 * 109.57123 * 62.95875 * 5 4 2 34 34 H 1.08998 * 109.46931 * 60.00190 * 8 6 5 35 35 H 1.08992 * 109.47587 * 299.99765 * 8 6 5 36 36 H 1.00891 * 111.00527 * 303.95649 * 9 8 6 37 37 H 1.09000 * 109.47045 * 65.09137 * 10 9 8 38 38 H 1.08998 * 109.47247 * 305.09025 * 10 9 8 39 39 H 0.96997 * 119.99989 * 180.02562 * 15 14 12 40 40 H 1.09005 * 117.49869 * 359.97438 * 20 11 10 41 41 H 1.08995 * 117.50269 * 145.02368 * 20 11 10 42 42 H 1.08997 * 117.49597 * 214.98086 * 21 11 10 43 43 H 1.08999 * 117.49977 * 0.02562 * 21 11 10 44 44 H 1.08994 * 109.48615 * 301.17447 * 23 22 6 45 45 H 1.09001 * 109.48709 * 181.14441 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0419 -0.7245 1.2488 5 6 3.5715 -0.7864 1.1987 6 6 4.0043 -1.4816 -0.0948 7 1 3.6317 -2.5060 -0.0991 8 6 5.5319 -1.4939 -0.1809 9 7 5.9469 -2.1616 -1.4218 10 6 7.4110 -2.1917 -1.5391 11 6 7.8019 -2.7781 -2.8972 12 6 6.8929 -2.4215 -4.0450 13 1 6.0998 -3.0947 -4.3351 14 6 7.0738 -1.2357 -4.7249 15 7 7.9293 -0.3438 -4.2753 16 14 6.1035 -0.8958 -6.2846 17 1 4.8305 -0.2147 -5.9371 18 1 6.9016 -0.0246 -7.1841 19 1 5.8070 -2.1781 -6.9724 20 6 8.4434 -4.1671 -2.9087 21 6 9.2943 -2.9290 -3.1984 22 8 3.4695 -0.7750 -1.2158 23 6 2.0417 -0.7257 -1.2472 24 1 -0.3634 0.5119 0.8910 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3633 -1.0277 -0.0023 27 1 3.1313 1.4411 -0.0022 28 1 1.6766 1.9568 -0.8889 29 1 1.6802 1.9556 0.8911 30 1 1.6366 -1.7361 1.2751 31 1 1.7278 -0.1812 2.1400 32 1 3.9416 -1.3489 2.0559 33 1 3.9788 0.2243 1.2229 34 1 5.9397 -2.0321 0.6748 35 1 5.9043 -0.4696 -0.1770 36 1 5.5601 -3.0917 -1.4789 37 1 7.8266 -2.8098 -0.7433 38 1 7.8031 -1.1782 -1.4545 39 1 8.0563 0.4906 -4.7534 40 1 8.5873 -4.6629 -1.9487 41 1 8.2080 -4.8233 -3.7465 42 1 9.6186 -2.7706 -4.2268 43 1 9.9977 -2.6108 -2.4289 44 1 1.6432 -1.7400 -1.2667 45 1 1.7159 -0.1899 -2.1387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711378757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:47 Heat of formation + Delta-G solvation = -35.353689 kcal Electronic energy + Delta-G solvation = -21505.999358 eV Core-core repulsion = 18523.595721 eV Total energy + Delta-G solvation = -2982.403636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78709 -36.91158 -35.43731 -34.02039 -31.99992 -31.64315 -28.01918 -27.30824 -25.74364 -25.20307 -24.15311 -22.20248 -21.19273 -20.89904 -18.94617 -18.69620 -16.28908 -15.93003 -15.46471 -14.95943 -14.74941 -14.36282 -14.24059 -14.07360 -13.51059 -13.46077 -13.00261 -12.54272 -12.49166 -12.24838 -12.04849 -11.91350 -11.71125 -11.44058 -11.26604 -11.14914 -10.87495 -10.77551 -10.74132 -10.57677 -10.34331 -10.31257 -10.00618 -9.92250 -9.33376 -9.00604 -8.66523 -8.15489 -7.90344 -7.20920 -5.77017 -3.75440 3.47979 3.53878 3.56131 4.12044 4.60550 4.64621 4.71181 4.74609 4.90458 5.19608 5.26024 5.36125 5.44623 5.49202 5.55645 5.56364 5.63468 5.65966 5.74932 5.83618 5.84319 5.88912 5.91655 5.97326 5.99264 6.13562 6.16000 6.26398 6.33132 6.38359 6.41411 6.51889 6.61510 6.72311 6.82457 7.07034 7.19590 7.56223 7.57240 7.69350 8.14766 8.20357 8.43087 8.71848 9.18765 9.86377 11.34223 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.005483 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.360512 B = 5105.094954 C = 6028.572981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.137 4.137 4 C -0.107 4.107 5 C -0.152 4.152 6 C 0.097 3.903 7 H 0.049 0.951 8 C 0.068 3.932 9 N -0.645 5.645 10 C 0.110 3.890 11 C 0.051 3.949 12 C -0.459 4.459 13 H 0.055 0.945 14 C 0.076 3.924 15 N -0.883 5.883 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.220 4.220 21 C -0.160 4.160 22 O -0.342 6.342 23 C 0.069 3.931 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.328 0.672 37 H -0.011 1.011 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 -0.072 11.693 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.194 4.194 4 C -0.145 4.145 5 C -0.190 4.190 6 C 0.039 3.961 7 H 0.067 0.933 8 C -0.062 4.062 9 N -0.274 5.274 10 C -0.019 4.019 11 C 0.050 3.950 12 C -0.497 4.497 13 H 0.073 0.927 14 C -0.126 4.126 15 N -0.521 5.521 16 Si 0.713 3.287 17 H -0.207 1.207 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.257 4.257 21 C -0.199 4.199 22 O -0.260 6.260 23 C -0.009 4.009 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.007 0.993 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.275 0.774 11.118 15.853 hybrid contribution -0.444 -0.470 0.092 0.652 sum -11.718 0.304 11.209 16.219 Atomic orbital electron populations 1.21790 0.94422 1.01616 1.01794 1.21235 0.95543 0.96919 0.96626 1.21806 1.02315 0.94287 1.00973 1.21624 0.95500 1.00123 0.97255 1.22251 0.95974 1.02346 0.98451 1.22072 0.94439 0.94156 0.85464 0.93313 1.21928 0.91968 1.00605 0.91698 1.60082 1.10601 1.23452 1.33233 1.21467 0.86008 0.99600 0.94812 1.18904 0.91692 0.90771 0.93642 1.20068 1.13839 1.03853 1.11973 0.92702 1.24800 0.94967 0.95758 0.97031 1.70008 1.36155 1.07323 1.38613 0.86729 0.80265 0.77874 0.83827 1.20691 1.21768 1.20320 1.23091 1.10114 0.92748 0.99745 1.22495 0.96069 1.00986 1.00305 1.88231 1.17952 1.75421 1.44350 1.22584 0.82790 0.98680 0.96803 0.92669 0.92486 0.92763 0.91439 0.92789 0.93316 0.92130 0.91895 0.91405 0.90708 0.95749 0.90845 0.85481 0.99286 0.91343 0.93648 0.92221 0.90632 0.90185 0.92229 0.93804 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.49 37.16 0.32 -0.97 16 2 C -0.10 -1.17 0.77 -154.36 -0.12 -1.29 16 3 C -0.14 -1.61 8.08 37.16 0.30 -1.31 16 4 C -0.11 -1.15 4.81 -26.55 -0.13 -1.28 16 5 C -0.15 -1.84 5.05 -26.59 -0.13 -1.98 16 6 C 0.10 1.48 2.85 -26.68 -0.08 1.40 16 7 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 8 C 0.07 1.18 5.37 -3.82 -0.02 1.16 16 9 N -0.64 -13.66 5.57 -113.77 -0.63 -14.29 16 10 C 0.11 2.52 5.80 -3.82 -0.02 2.50 16 11 C 0.05 1.27 1.75 -155.66 -0.27 0.99 16 12 C -0.46 -12.78 8.06 -34.44 -0.28 -13.06 16 13 H 0.05 1.55 7.83 -52.49 -0.41 1.14 16 14 C 0.08 2.17 5.38 -17.82 -0.10 2.08 16 15 N -0.88 -26.00 13.01 55.43 0.72 -25.28 16 16 Si 0.88 22.33 29.55 -169.99 -5.02 17.31 16 17 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.22 -4.89 9.88 -26.73 -0.26 -5.15 16 21 C -0.16 -3.87 9.54 -26.73 -0.26 -4.12 16 22 O -0.34 -6.10 9.70 -35.23 -0.34 -6.44 16 23 C 0.07 0.96 5.54 37.21 0.21 1.17 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.92 6.15 -51.93 -0.32 0.60 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.95 6.63 -51.93 -0.34 0.60 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.33 6.62 8.79 -39.30 -0.35 6.28 16 37 H -0.01 -0.23 7.91 -51.93 -0.41 -0.64 16 38 H 0.07 1.73 8.13 -51.93 -0.42 1.31 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -29.96 352.59 -9.38 -39.33 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.57 Total: 3.90 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -0.84 Total: -19.84 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.09 Total: -39.57 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.34 Total: -6.44 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.96 -9.38 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711378757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.980 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds