Wall clock time and date at job start Mon Mar 30 2020 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.52382 * 2 1 4 4 C 1.53179 * 109.52347 * 120.12254 * 2 1 3 5 5 C 1.53174 * 109.03909 * 176.88672 * 4 2 1 6 6 C 1.53091 * 109.16204 * 303.02095 * 5 4 2 7 7 H 1.09001 * 109.48168 * 297.61048 * 6 5 4 8 8 C 1.53007 * 109.47550 * 177.59041 * 6 5 4 9 9 N 1.46902 * 109.46709 * 179.97438 * 8 6 5 10 10 C 1.46902 * 110.99828 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47175 * 185.08680 * 10 9 8 12 12 C 1.50697 * 115.54725 * 35.91712 * 11 10 9 13 13 H 1.07997 * 120.00348 * 264.56201 * 12 11 10 14 14 C 1.37884 * 119.99944 * 84.56043 * 12 11 10 15 15 N 1.31513 * 120.00053 * 351.78170 * 14 12 11 16 16 Si 1.86803 * 120.00122 * 171.78895 * 14 12 11 17 17 H 1.48501 * 109.46988 * 89.99513 * 16 14 12 18 18 H 1.48494 * 109.47126 * 209.99949 * 16 14 12 19 19 H 1.48502 * 109.46988 * 329.99934 * 16 14 12 20 20 C 1.52995 * 117.49942 * 250.21164 * 11 10 9 21 21 C 1.52997 * 117.49838 * 181.58776 * 11 10 9 22 22 O 1.42901 * 109.41640 * 57.61088 * 6 5 4 23 23 C 1.42897 * 114.09435 * 298.83656 * 22 6 5 24 24 H 1.08997 * 109.47465 * 299.87788 * 1 2 3 25 25 H 1.09007 * 109.46947 * 59.87647 * 1 2 3 26 26 H 1.09001 * 109.46967 * 179.87011 * 1 2 3 27 27 H 1.08999 * 109.47333 * 180.12319 * 3 2 1 28 28 H 1.09002 * 109.46778 * 300.12275 * 3 2 1 29 29 H 1.08998 * 109.46898 * 60.12046 * 3 2 1 30 30 H 1.09003 * 109.53827 * 57.01702 * 4 2 1 31 31 H 1.09002 * 109.54139 * 296.76086 * 4 2 1 32 32 H 1.09000 * 109.52269 * 183.11609 * 5 4 2 33 33 H 1.08998 * 109.57123 * 62.95875 * 5 4 2 34 34 H 1.08998 * 109.46931 * 60.00190 * 8 6 5 35 35 H 1.08992 * 109.47587 * 299.99765 * 8 6 5 36 36 H 1.00891 * 111.00527 * 303.95649 * 9 8 6 37 37 H 1.09000 * 109.47045 * 65.09137 * 10 9 8 38 38 H 1.08998 * 109.47247 * 305.09025 * 10 9 8 39 39 H 0.96997 * 119.99989 * 180.02562 * 15 14 12 40 40 H 1.09005 * 117.49869 * 359.97438 * 20 11 10 41 41 H 1.08995 * 117.50269 * 145.02368 * 20 11 10 42 42 H 1.08997 * 117.49597 * 214.98086 * 21 11 10 43 43 H 1.08999 * 117.49977 * 0.02562 * 21 11 10 44 44 H 1.08994 * 109.48615 * 301.17447 * 23 22 6 45 45 H 1.09001 * 109.48709 * 181.14441 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0419 -0.7245 1.2488 5 6 3.5715 -0.7864 1.1987 6 6 4.0043 -1.4816 -0.0948 7 1 3.6317 -2.5060 -0.0991 8 6 5.5319 -1.4939 -0.1809 9 7 5.9469 -2.1616 -1.4218 10 6 7.4110 -2.1917 -1.5391 11 6 7.8019 -2.7781 -2.8972 12 6 6.8929 -2.4215 -4.0450 13 1 6.0998 -3.0947 -4.3351 14 6 7.0738 -1.2357 -4.7249 15 7 7.9293 -0.3438 -4.2753 16 14 6.1035 -0.8958 -6.2846 17 1 4.8305 -0.2147 -5.9371 18 1 6.9016 -0.0246 -7.1841 19 1 5.8070 -2.1781 -6.9724 20 6 8.4434 -4.1671 -2.9087 21 6 9.2943 -2.9290 -3.1984 22 8 3.4695 -0.7750 -1.2158 23 6 2.0417 -0.7257 -1.2472 24 1 -0.3634 0.5119 0.8910 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3633 -1.0277 -0.0023 27 1 3.1313 1.4411 -0.0022 28 1 1.6766 1.9568 -0.8889 29 1 1.6802 1.9556 0.8911 30 1 1.6366 -1.7361 1.2751 31 1 1.7278 -0.1812 2.1400 32 1 3.9416 -1.3489 2.0559 33 1 3.9788 0.2243 1.2229 34 1 5.9397 -2.0321 0.6748 35 1 5.9043 -0.4696 -0.1770 36 1 5.5601 -3.0917 -1.4789 37 1 7.8266 -2.8098 -0.7433 38 1 7.8031 -1.1782 -1.4545 39 1 8.0563 0.4906 -4.7534 40 1 8.5873 -4.6629 -1.9487 41 1 8.2080 -4.8233 -3.7465 42 1 9.6186 -2.7706 -4.2268 43 1 9.9977 -2.6108 -2.4289 44 1 1.6432 -1.7400 -1.2667 45 1 1.7159 -0.1899 -2.1387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711378757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:47 Heat of formation + Delta-G solvation = -52.853787 kcal Electronic energy + Delta-G solvation = -21506.758219 eV Core-core repulsion = 18523.595721 eV Total energy + Delta-G solvation = -2983.162497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85579 -38.72625 -36.67814 -35.42531 -33.81407 -33.14679 -29.27828 -28.17761 -27.43904 -26.70575 -25.61280 -23.47328 -22.85028 -22.33825 -20.85646 -19.73589 -17.96069 -17.40054 -16.78465 -16.47733 -16.04651 -15.92921 -15.64014 -15.32604 -15.08624 -14.67492 -14.62315 -13.94285 -13.73400 -13.42461 -13.20306 -13.05281 -12.99349 -12.84715 -12.83866 -12.63931 -12.59618 -12.34402 -12.27035 -11.93902 -11.89263 -11.69150 -11.38922 -11.20340 -10.98564 -10.66903 -10.28527 -10.11752 -9.83188 -8.82239 -7.94811 -5.96861 1.43335 1.46784 1.53008 2.54149 2.98193 3.34882 3.39748 3.58822 3.74762 3.84931 3.91448 4.12603 4.16830 4.30521 4.39205 4.45768 4.53600 4.62765 4.65609 4.70588 4.73374 4.77303 4.80841 4.81845 4.84529 4.94311 4.99616 5.02220 5.04819 5.07189 5.15051 5.17663 5.26675 5.30851 5.32832 5.43077 5.55790 5.66403 5.71108 5.93729 6.42541 6.53591 6.67708 6.88370 7.03945 7.66679 9.15490 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.005483 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.360512 B = 5105.094954 C = 6028.572981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.103 4.103 5 C -0.146 4.146 6 C 0.099 3.901 7 H 0.056 0.944 8 C 0.070 3.930 9 N -0.666 5.666 10 C 0.124 3.876 11 C 0.019 3.981 12 C -0.461 4.461 13 H 0.044 0.956 14 C 0.029 3.971 15 N -0.911 5.911 16 Si 0.937 3.063 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.270 1.270 20 C -0.189 4.189 21 C -0.168 4.168 22 O -0.384 6.384 23 C 0.063 3.937 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.334 0.666 37 H 0.012 0.988 38 H 0.034 0.966 39 H 0.251 0.749 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 -1.134 13.285 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.192 4.192 4 C -0.141 4.141 5 C -0.184 4.184 6 C 0.041 3.959 7 H 0.074 0.926 8 C -0.059 4.059 9 N -0.296 5.296 10 C -0.005 4.005 11 C 0.019 3.981 12 C -0.499 4.499 13 H 0.062 0.938 14 C -0.170 4.170 15 N -0.551 5.551 16 Si 0.764 3.236 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.195 1.195 20 C -0.226 4.226 21 C -0.206 4.206 22 O -0.303 6.303 23 C -0.014 4.014 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.151 0.849 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.776 -0.304 12.711 18.025 hybrid contribution 0.026 -0.169 -0.411 0.445 sum -12.750 -0.473 12.300 17.722 Atomic orbital electron populations 1.21753 0.92483 1.02390 1.02526 1.21197 0.96977 0.96087 0.95662 1.21782 1.00689 0.95071 1.01655 1.21629 0.94094 1.00905 0.97450 1.22190 0.97303 1.01646 0.97236 1.22107 0.92683 0.94776 0.86370 0.92560 1.21959 0.93836 0.99065 0.91036 1.59951 1.09603 1.24051 1.35994 1.21173 0.87260 0.97752 0.94352 1.19055 0.91677 0.93459 0.93946 1.20287 1.13630 1.03325 1.12704 0.93758 1.25422 0.96069 0.95938 0.99553 1.70116 1.37737 1.07576 1.39645 0.85898 0.78748 0.77838 0.81075 1.21261 1.21472 1.19474 1.23075 1.06927 0.91458 1.01179 1.22414 0.95968 1.02868 0.99361 1.88159 1.20175 1.76076 1.45904 1.22737 0.81191 0.99426 0.98065 0.91189 0.92553 0.91974 0.93912 0.93336 0.91404 0.91104 0.89938 0.89411 0.91713 0.93175 0.93180 0.84864 0.96967 0.94710 0.94042 0.89152 0.90563 0.92539 0.91068 0.93097 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.49 71.98 0.61 -1.53 16 2 C -0.10 -2.07 0.77 -52.09 -0.04 -2.11 16 3 C -0.13 -3.05 8.08 71.98 0.58 -2.47 16 4 C -0.10 -1.91 4.81 30.71 0.15 -1.76 16 5 C -0.15 -3.26 5.05 30.68 0.16 -3.10 16 6 C 0.10 2.92 2.85 30.63 0.09 3.01 16 7 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 8 C 0.07 2.42 5.37 86.31 0.46 2.89 16 9 N -0.67 -28.16 5.57 -513.87 -2.86 -31.02 16 10 C 0.12 5.66 5.80 86.31 0.50 6.16 16 11 C 0.02 0.96 1.75 -52.93 -0.09 0.87 16 12 C -0.46 -25.87 8.06 25.60 0.21 -25.67 16 13 H 0.04 2.52 7.83 -2.91 -0.02 2.50 16 14 C 0.03 1.66 5.38 84.66 0.46 2.12 16 15 N -0.91 -54.95 13.01 21.45 0.28 -54.67 16 16 Si 0.94 46.60 29.55 68.60 2.03 48.63 16 17 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 18 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 C -0.19 -8.06 9.88 30.59 0.30 -7.76 16 21 C -0.17 -8.04 9.54 30.59 0.29 -7.75 16 22 O -0.38 -13.83 9.70 -148.98 -1.44 -15.28 16 23 C 0.06 1.72 5.54 72.02 0.40 2.12 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.04 1.17 6.15 -2.39 -0.01 1.16 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.59 6.63 -2.39 -0.02 1.57 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.33 13.24 8.79 -89.70 -0.79 12.45 16 37 H 0.01 0.50 7.91 -2.39 -0.02 0.48 16 38 H 0.03 1.79 8.13 -2.39 -0.02 1.77 16 39 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.09 3.30 8.06 -2.38 -0.02 3.28 16 41 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -65.03 352.59 2.21 -62.83 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.14 Total: 24.51 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 4.07 Total: -34.99 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.58 Total: -85.70 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.44 Total: -15.28 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -65.03 2.21 -62.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711378757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.972 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds