Wall clock time and date at job start Mon Mar 30 2020 07:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.51764 * 2 1 4 4 C 1.53175 * 109.52475 * 120.12243 * 2 1 3 5 5 C 1.53184 * 109.03489 * 62.92711 * 4 2 1 6 6 C 1.53093 * 109.16219 * 56.98071 * 5 4 2 7 7 H 1.09003 * 109.47809 * 62.38040 * 6 5 4 8 8 C 1.52995 * 109.48127 * 182.40815 * 6 5 4 9 9 N 1.46899 * 109.47179 * 184.97988 * 8 6 5 10 10 C 1.46898 * 110.99951 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47045 * 174.70781 * 10 9 8 12 12 C 1.50694 * 115.55107 * 39.57202 * 11 10 9 13 13 H 1.07995 * 120.00244 * 265.27140 * 12 11 10 14 14 C 1.37885 * 120.00013 * 85.27089 * 12 11 10 15 15 N 1.31511 * 120.00024 * 353.36825 * 14 12 11 16 16 Si 1.86797 * 119.99983 * 173.36618 * 14 12 11 17 17 H 1.48497 * 109.47168 * 90.00064 * 16 14 12 18 18 H 1.48501 * 109.47261 * 209.99770 * 16 14 12 19 19 H 1.48498 * 109.47496 * 330.00097 * 16 14 12 20 20 C 1.53002 * 117.50130 * 253.86152 * 11 10 9 21 21 C 1.52999 * 60.00218 * 252.51193 * 20 11 10 22 22 O 1.42902 * 109.42637 * 302.39791 * 6 5 4 23 23 C 1.42904 * 114.09989 * 61.13411 * 22 6 5 24 24 H 1.08999 * 109.47572 * 299.87134 * 1 2 3 25 25 H 1.08996 * 109.47579 * 59.87797 * 1 2 3 26 26 H 1.09006 * 109.46729 * 179.87771 * 1 2 3 27 27 H 1.08997 * 109.46834 * 180.13198 * 3 2 1 28 28 H 1.09006 * 109.46633 * 300.12466 * 3 2 1 29 29 H 1.08998 * 109.47263 * 60.12307 * 3 2 1 30 30 H 1.09001 * 109.54343 * 303.06247 * 4 2 1 31 31 H 1.08994 * 109.54594 * 182.79469 * 4 2 1 32 32 H 1.08993 * 109.52239 * 297.07854 * 5 4 2 33 33 H 1.09000 * 109.51996 * 176.88698 * 5 4 2 34 34 H 1.08996 * 109.47102 * 64.97492 * 8 6 5 35 35 H 1.09002 * 109.47061 * 304.97522 * 8 6 5 36 36 H 1.00894 * 111.00436 * 56.04014 * 9 8 6 37 37 H 1.08994 * 109.47193 * 294.70550 * 10 9 8 38 38 H 1.08996 * 109.47538 * 54.71077 * 10 9 8 39 39 H 0.96993 * 120.00214 * 185.05936 * 15 14 12 40 40 H 1.09004 * 117.49211 * 0.02562 * 20 11 10 41 41 H 1.08997 * 117.49889 * 145.01822 * 20 11 10 42 42 H 1.09001 * 117.49566 * 252.50662 * 21 20 11 43 43 H 1.09000 * 117.49800 * 107.48935 * 21 20 11 44 44 H 1.09002 * 109.48567 * 178.87230 * 23 22 6 45 45 H 1.09004 * 109.47912 * 58.85486 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0419 -0.7245 1.2487 5 6 1.5878 -2.1866 1.1994 6 6 2.0972 -2.8277 -0.0941 7 1 3.1871 -2.8197 -0.0990 8 6 1.5971 -4.2711 -0.1795 9 7 2.1822 -4.9231 -1.3587 10 6 1.7228 -6.3137 -1.4736 11 6 2.2452 -6.9171 -2.7789 12 6 3.6548 -6.5370 -3.1524 13 1 3.8314 -5.7068 -3.8201 14 6 4.7193 -7.2493 -2.6415 15 7 4.5144 -8.1741 -1.7293 16 14 6.4522 -6.9005 -3.2453 17 1 7.0695 -5.8491 -2.3976 18 1 7.2638 -8.1415 -3.1641 19 1 6.4011 -6.4337 -4.6541 20 6 1.2418 -7.1161 -3.9167 21 6 1.7729 -8.3257 -3.1449 22 8 1.6101 -2.0875 -1.2153 23 6 2.0416 -0.7255 -1.2472 24 1 -0.3634 0.5118 0.8911 25 1 -0.3634 0.5157 -0.8888 26 1 -0.3633 -1.0277 -0.0022 27 1 3.1312 1.4412 -0.0024 28 1 1.6764 1.9569 -0.8889 29 1 1.6801 1.9556 0.8911 30 1 1.6356 -0.2463 2.1400 31 1 3.1307 -0.6816 1.2745 32 1 0.4990 -2.2308 1.2236 33 1 1.9942 -2.7234 2.0566 34 1 0.5104 -4.2748 -0.2641 35 1 1.8934 -4.8121 0.7192 36 1 3.1898 -4.8755 -1.3356 37 1 2.0995 -6.8917 -0.6298 38 1 0.6331 -6.3376 -1.4729 39 1 5.2683 -8.6237 -1.3167 40 1 0.2095 -6.8167 -3.7353 41 1 1.6011 -6.9719 -4.9356 42 1 2.4816 -8.9773 -3.6561 43 1 1.0900 -8.8224 -2.4557 44 1 1.6453 -0.2394 -2.1388 45 1 3.1308 -0.6897 -1.2675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711378759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:49 Heat of formation + Delta-G solvation = -57.723951 kcal Electronic energy + Delta-G solvation = -21326.610693 eV Core-core repulsion = 18343.237009 eV Total energy + Delta-G solvation = -2983.373684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86875 -38.73650 -36.67163 -35.42603 -33.94454 -33.15102 -29.30175 -28.14337 -27.51666 -26.72322 -25.61304 -23.42713 -22.83748 -22.36873 -20.91658 -19.72802 -17.88351 -17.43734 -16.76788 -16.55685 -16.06515 -15.92593 -15.69669 -15.46849 -15.17098 -14.70641 -14.42359 -14.01661 -13.71799 -13.44214 -13.13141 -13.10983 -12.97810 -12.84639 -12.83693 -12.71863 -12.61356 -12.30527 -12.26388 -11.96315 -11.90666 -11.70409 -11.36071 -11.20193 -11.01039 -10.74138 -10.38616 -10.15605 -9.89349 -8.94909 -8.04912 -6.13620 1.41191 1.44626 1.53793 2.45561 2.94021 3.21863 3.35064 3.63694 3.76085 3.85709 3.90424 4.12337 4.16616 4.30896 4.36723 4.45226 4.57952 4.64458 4.65606 4.71027 4.73515 4.78654 4.82644 4.84437 4.92304 4.96616 5.00266 5.03842 5.05187 5.06693 5.14606 5.17084 5.25591 5.28387 5.33318 5.43246 5.56890 5.63818 5.66587 5.82571 6.40366 6.47482 6.61321 6.76368 6.93391 7.52319 9.02697 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.004669 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.388158 B = 5996.194859 C = 6540.873845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C -0.136 4.136 4 C -0.107 4.107 5 C -0.145 4.145 6 C 0.100 3.900 7 H 0.043 0.957 8 C 0.066 3.934 9 N -0.673 5.673 10 C 0.120 3.880 11 C 0.025 3.975 12 C -0.487 4.487 13 H 0.048 0.952 14 C 0.028 3.972 15 N -0.909 5.909 16 Si 0.944 3.056 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.189 4.189 21 C -0.166 4.166 22 O -0.380 6.380 23 C 0.063 3.937 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.339 0.661 37 H 0.003 0.997 38 H 0.049 0.951 39 H 0.258 0.742 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 16.501 7.500 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.145 4.145 5 C -0.183 4.183 6 C 0.042 3.958 7 H 0.061 0.939 8 C -0.063 4.063 9 N -0.304 5.304 10 C -0.009 4.009 11 C 0.024 3.976 12 C -0.525 4.525 13 H 0.066 0.934 14 C -0.172 4.172 15 N -0.548 5.548 16 Si 0.770 3.230 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.226 4.226 21 C -0.204 4.204 22 O -0.299 6.299 23 C -0.014 4.014 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.157 0.843 37 H 0.021 0.979 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.286 16.480 6.990 18.973 hybrid contribution 1.750 -0.721 0.502 1.958 sum -4.537 15.760 7.492 18.030 Atomic orbital electron populations 1.21781 0.93740 1.01663 1.01917 1.21186 0.96924 0.96427 0.95332 1.21763 1.01003 0.93802 1.02712 1.21655 1.00670 0.94156 0.97970 1.22183 1.02293 0.96923 0.96896 1.22023 0.96574 0.90558 0.86632 0.93948 1.21988 1.00075 0.92546 0.91715 1.60303 1.13888 1.16206 1.39960 1.21159 0.96141 0.87602 0.96034 1.18975 0.92841 0.94145 0.91651 1.20521 0.89953 1.13944 1.28122 0.93422 1.25579 1.01822 0.94525 0.95282 1.70096 1.31375 1.26220 1.27087 0.85774 0.80910 0.77288 0.78997 1.20009 1.21383 1.19847 1.22973 0.98334 1.04044 0.97225 1.22429 1.02267 0.92128 1.03547 1.88042 1.73687 1.22488 1.45709 1.22765 0.98117 0.82077 0.98439 0.91655 0.92639 0.93354 0.92536 0.91998 0.91311 0.89899 0.91958 0.90618 0.90256 0.91153 0.94464 0.84251 0.97937 0.93265 0.93334 0.89673 0.91015 0.92467 0.91023 0.88877 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.07 71.98 0.58 -1.90 16 2 C -0.10 -1.86 0.78 -52.09 -0.04 -1.90 16 3 C -0.14 -1.98 8.49 71.98 0.61 -1.36 16 4 C -0.11 -1.99 4.81 30.71 0.15 -1.84 16 5 C -0.14 -3.22 5.05 30.69 0.16 -3.07 16 6 C 0.10 2.98 2.82 30.62 0.09 3.07 16 7 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 8 C 0.07 2.27 5.34 86.30 0.46 2.73 16 9 N -0.67 -28.80 6.21 -513.92 -3.19 -31.99 16 10 C 0.12 5.55 5.80 86.30 0.50 6.05 16 11 C 0.02 1.24 1.76 -52.93 -0.09 1.14 16 12 C -0.49 -26.65 7.47 25.60 0.19 -26.46 16 13 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 14 C 0.03 1.50 5.39 84.66 0.46 1.96 16 15 N -0.91 -51.58 12.93 21.45 0.28 -51.31 16 16 Si 0.94 43.51 29.55 68.60 2.03 45.54 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 C -0.19 -8.56 9.88 30.59 0.30 -8.25 16 21 C -0.17 -8.04 9.46 30.60 0.29 -7.75 16 22 O -0.38 -12.23 9.77 -148.98 -1.46 -13.69 16 23 C 0.06 1.55 5.54 72.01 0.40 1.95 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 1.07 6.14 -2.38 -0.01 1.06 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.66 6.62 -2.39 -0.02 1.65 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.34 15.75 7.71 -89.70 -0.69 15.06 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 39 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 40 H 0.08 3.46 8.08 -2.39 -0.02 3.44 16 41 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -59.70 351.48 1.94 -57.76 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.24 Total: 29.33 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.05 Total: -35.65 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.91 Total: -83.30 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.46 Total: -13.69 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -59.70 1.94 -57.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711378759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.037 kcal (2) G-P(sol) polarization free energy of solvation -59.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds