Wall clock time and date at job start Mon Mar 30 2020 07:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.51849 * 2 1 4 4 C 1.53174 * 109.51975 * 120.12971 * 2 1 3 5 5 C 1.53185 * 109.03378 * 176.88887 * 4 2 1 6 6 C 1.53091 * 109.15953 * 303.01777 * 5 4 2 7 7 H 1.09003 * 109.48206 * 297.61133 * 6 5 4 8 8 C 1.53008 * 109.47709 * 177.59215 * 6 5 4 9 9 N 1.46895 * 109.46853 * 179.97438 * 8 6 5 10 10 C 1.48562 * 111.00142 * 54.57993 * 9 8 6 11 11 C 1.54377 * 104.59407 * 159.03785 * 10 9 8 12 12 C 1.54266 * 105.06190 * 336.14868 * 11 10 9 13 13 H 1.08996 * 110.32023 * 118.89709 * 12 11 10 14 14 C 1.50702 * 110.32386 * 241.10420 * 12 11 10 15 15 H 1.07991 * 120.00105 * 118.54573 * 14 12 11 16 16 C 1.37876 * 119.99854 * 298.54444 * 14 12 11 17 17 N 1.31512 * 120.00079 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 120.00359 * 0.02562 * 16 14 12 19 19 H 1.48494 * 109.47098 * 89.99471 * 18 16 14 20 20 H 1.48494 * 109.47154 * 210.00131 * 18 16 14 21 21 H 1.48508 * 109.46751 * 329.99898 * 18 16 14 22 22 C 1.48562 * 110.99842 * 170.00157 * 9 8 6 23 23 O 1.42899 * 109.41933 * 57.60982 * 6 5 4 24 24 C 1.42899 * 114.09624 * 298.84446 * 23 6 5 25 25 H 1.08999 * 109.47465 * 299.86935 * 1 2 3 26 26 H 1.08998 * 109.47088 * 59.87406 * 1 2 3 27 27 H 1.09004 * 109.46945 * 179.87258 * 1 2 3 28 28 H 1.09005 * 109.46811 * 180.11999 * 3 2 1 29 29 H 1.08994 * 109.47453 * 300.12359 * 3 2 1 30 30 H 1.09007 * 109.46873 * 60.12966 * 3 2 1 31 31 H 1.08993 * 109.54792 * 57.01997 * 4 2 1 32 32 H 1.09003 * 109.54446 * 296.74921 * 4 2 1 33 33 H 1.08997 * 109.52002 * 183.11089 * 5 4 2 34 34 H 1.08998 * 109.52398 * 62.92304 * 5 4 2 35 35 H 1.08998 * 109.47000 * 59.99722 * 8 6 5 36 36 H 1.08997 * 109.47172 * 299.99907 * 8 6 5 37 37 H 1.09000 * 110.41111 * 40.26361 * 10 9 8 38 38 H 1.08989 * 110.41482 * 277.81625 * 10 9 8 39 39 H 1.09005 * 110.32720 * 217.25400 * 11 10 9 40 40 H 1.09003 * 110.32570 * 95.04509 * 11 10 9 41 41 H 0.97004 * 120.00453 * 179.97438 * 17 16 14 42 42 H 1.08998 * 110.41528 * 82.17831 * 22 9 8 43 43 H 1.08997 * 110.50874 * 319.78619 * 22 9 8 44 44 H 1.08999 * 109.47837 * 301.17057 * 24 23 6 45 45 H 1.08999 * 109.48134 * 181.13908 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0418 -0.7247 1.2486 5 6 3.5716 -0.7865 1.1986 6 6 4.0043 -1.4816 -0.0950 7 1 3.6317 -2.5060 -0.0994 8 6 5.5319 -1.4939 -0.1812 9 7 5.9469 -2.1614 -1.4221 10 6 5.3038 -1.5337 -2.6051 11 6 6.2010 -1.9366 -3.7951 12 6 7.5816 -2.2330 -3.1739 13 1 7.8640 -3.2698 -3.3563 14 6 8.6210 -1.2991 -3.7385 15 1 9.1502 -0.6216 -3.0849 16 6 8.8962 -1.3097 -5.0894 17 7 9.8036 -0.4951 -5.5821 18 14 7.9803 -2.4811 -6.2202 19 1 6.7518 -1.8195 -6.7282 20 1 8.8533 -2.8492 -7.3636 21 1 7.6078 -3.7058 -5.4674 22 6 7.4025 -1.9842 -1.6609 23 8 3.4694 -0.7749 -1.2159 24 6 2.0417 -0.7255 -1.2472 25 1 -0.3634 0.5118 0.8911 26 1 -0.3633 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0023 28 1 3.1313 1.4411 -0.0022 29 1 1.6765 1.9569 -0.8888 30 1 1.6802 1.9555 0.8912 31 1 1.6367 -1.7362 1.2750 32 1 1.7279 -0.1814 2.1400 33 1 3.9416 -1.3490 2.0558 34 1 3.9780 0.2246 1.2223 35 1 5.9397 -2.0321 0.6744 36 1 5.9043 -0.4695 -0.1772 37 1 5.2823 -0.4494 -2.4954 38 1 4.2950 -1.9231 -2.7408 39 1 6.2752 -1.1156 -4.5084 40 1 5.8059 -2.8280 -4.2824 41 1 9.9975 -0.5028 -6.5325 42 1 7.9736 -2.7129 -1.0856 43 1 7.7112 -0.9712 -1.4030 44 1 1.6432 -1.7398 -1.2668 45 1 1.7159 -0.1896 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713553839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:36 Heat of formation + Delta-G solvation = -55.036591 kcal Electronic energy + Delta-G solvation = -21849.172405 eV Core-core repulsion = 18865.915254 eV Total energy + Delta-G solvation = -2983.257151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16084 -37.98911 -35.38898 -33.53136 -32.41814 -30.74177 -28.18717 -27.61152 -27.46415 -25.79790 -24.27776 -22.79654 -21.61499 -20.22845 -19.30362 -18.91945 -16.53477 -16.38008 -15.85039 -15.30880 -15.05694 -14.71890 -14.46399 -14.14102 -13.68996 -13.36823 -13.34166 -12.74333 -12.59722 -12.43270 -12.33961 -12.11595 -12.04269 -11.71290 -11.41878 -11.23942 -11.10132 -10.93426 -10.88019 -10.51367 -10.44144 -10.36402 -10.16683 -9.89790 -9.68867 -9.40205 -9.18057 -8.85336 -8.48682 -7.79167 -6.01507 -3.99949 3.35709 3.43776 3.48839 3.84627 4.41645 4.49150 4.51337 4.57076 4.67015 5.00013 5.07308 5.12548 5.26822 5.31033 5.37564 5.43150 5.51486 5.55195 5.61491 5.64594 5.68611 5.74178 5.78833 5.82834 5.90373 5.93467 6.00160 6.11040 6.13444 6.16340 6.27305 6.32901 6.38381 6.62314 6.72639 6.93703 7.01245 7.18157 7.34219 7.47262 7.58398 7.74102 7.92397 8.58953 9.01394 9.61738 11.11619 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032444 B = 0.004571 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.811454 B = 6124.459043 C = 6424.788548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.137 4.137 4 C -0.108 4.108 5 C -0.150 4.150 6 C 0.093 3.907 7 H 0.062 0.938 8 C 0.053 3.947 9 N -0.519 5.519 10 C 0.059 3.941 11 C -0.138 4.138 12 C 0.013 3.987 13 H 0.033 0.967 14 C -0.510 4.510 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.263 1.263 22 C 0.050 3.950 23 O -0.361 6.361 24 C 0.068 3.932 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.263 0.737 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.380 -0.137 13.190 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.194 4.194 4 C -0.146 4.146 5 C -0.188 4.188 6 C 0.035 3.965 7 H 0.080 0.920 8 C -0.076 4.076 9 N -0.243 5.243 10 C -0.068 4.068 11 C -0.177 4.177 12 C -0.007 4.007 13 H 0.052 0.948 14 C -0.548 4.548 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.187 1.187 22 C -0.078 4.078 23 O -0.280 6.280 24 C -0.009 4.009 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.313 -0.557 12.954 22.438 hybrid contribution -0.440 0.278 -0.509 0.728 sum -18.753 -0.279 12.445 22.508 Atomic orbital electron populations 1.21795 0.94267 1.01713 1.01914 1.21202 0.95669 0.96824 0.96461 1.21812 1.02123 0.94317 1.01168 1.21635 0.95418 1.00259 0.97291 1.22222 0.96050 1.02188 0.98371 1.22112 0.94095 0.94882 0.85421 0.91997 1.22281 0.92369 0.97931 0.95063 1.65470 1.06681 1.50881 1.01300 1.22972 0.97157 0.97120 0.89593 1.22879 0.97482 0.99850 0.97461 1.19865 0.92708 0.97508 0.90573 0.94842 1.21080 1.19954 1.20284 0.93519 0.91033 1.24984 0.94831 0.95135 0.98139 1.69912 1.33005 1.37931 1.13424 0.86884 0.79533 0.82435 0.80254 1.20308 1.22158 1.18737 1.23114 0.86737 0.99167 0.98753 1.88235 1.18912 1.76358 1.44448 1.22591 0.82300 0.98953 0.97098 0.92542 0.92467 0.92697 0.91618 0.92764 0.93141 0.91972 0.91733 0.91035 0.90827 0.90095 0.94244 0.93717 0.90928 0.91420 0.93920 0.92768 0.91941 0.94066 0.93506 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.49 37.16 0.32 -0.76 16 2 C -0.10 -0.94 0.77 -154.37 -0.12 -1.06 16 3 C -0.14 -1.34 8.08 37.16 0.30 -1.04 16 4 C -0.11 -0.98 4.81 -26.55 -0.13 -1.11 16 5 C -0.15 -1.55 5.06 -26.59 -0.13 -1.68 16 6 C 0.09 1.21 2.76 -26.68 -0.07 1.13 16 7 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 8 C 0.05 0.80 4.94 -3.82 -0.02 0.78 16 9 N -0.52 -9.76 5.49 -229.98 -1.26 -11.02 16 10 C 0.06 1.16 4.64 -2.18 -0.01 1.15 16 11 C -0.14 -3.15 4.62 -25.35 -0.12 -3.27 16 12 C 0.01 0.32 2.51 -90.39 -0.23 0.09 16 13 H 0.03 0.85 7.28 -51.93 -0.38 0.47 16 14 C -0.51 -14.65 8.95 -34.44 -0.31 -14.96 16 15 H 0.07 2.21 7.82 -52.49 -0.41 1.80 16 16 C 0.07 2.06 5.34 -17.82 -0.10 1.97 16 17 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 18 Si 0.88 22.34 24.63 -169.99 -4.19 18.16 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.26 -6.46 6.49 56.52 0.37 -6.09 16 22 C 0.05 1.05 6.02 -2.18 -0.01 1.04 16 23 O -0.36 -5.10 5.77 -35.23 -0.20 -5.30 16 24 C 0.07 0.75 5.54 37.20 0.21 0.96 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.75 6.15 -51.93 -0.32 0.43 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.80 6.63 -51.93 -0.34 0.46 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 37 H 0.04 0.92 7.29 -51.93 -0.38 0.54 16 38 H 0.07 1.34 6.80 -51.93 -0.35 0.99 16 39 H 0.07 1.65 6.46 -51.93 -0.34 1.32 16 40 H 0.04 0.94 7.48 -51.93 -0.39 0.55 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.04 0.91 7.39 -51.93 -0.38 0.52 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -30.56 328.41 -8.72 -39.28 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.37 Total: -1.95 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.42 Total: -16.75 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.49 Total: -38.38 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.20 Total: -5.30 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.19 Total: 18.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.56 -8.72 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.755 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds