Wall clock time and date at job start Mon Mar 30 2020 07:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.51849 * 2 1 4 4 C 1.53174 * 109.51975 * 120.12971 * 2 1 3 5 5 C 1.53185 * 109.03378 * 176.88887 * 4 2 1 6 6 C 1.53091 * 109.15953 * 303.01777 * 5 4 2 7 7 H 1.09003 * 109.48206 * 297.61133 * 6 5 4 8 8 C 1.53008 * 109.47709 * 177.59215 * 6 5 4 9 9 N 1.46895 * 109.46853 * 179.97438 * 8 6 5 10 10 C 1.48562 * 111.00142 * 54.57993 * 9 8 6 11 11 C 1.54377 * 104.59407 * 159.03785 * 10 9 8 12 12 C 1.54266 * 105.06190 * 336.14868 * 11 10 9 13 13 H 1.08996 * 110.32023 * 118.89709 * 12 11 10 14 14 C 1.50702 * 110.32386 * 241.10420 * 12 11 10 15 15 H 1.07991 * 120.00105 * 118.54573 * 14 12 11 16 16 C 1.37876 * 119.99854 * 298.54444 * 14 12 11 17 17 N 1.31512 * 120.00079 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 120.00359 * 0.02562 * 16 14 12 19 19 H 1.48494 * 109.47098 * 89.99471 * 18 16 14 20 20 H 1.48494 * 109.47154 * 210.00131 * 18 16 14 21 21 H 1.48508 * 109.46751 * 329.99898 * 18 16 14 22 22 C 1.48562 * 110.99842 * 170.00157 * 9 8 6 23 23 O 1.42899 * 109.41933 * 57.60982 * 6 5 4 24 24 C 1.42899 * 114.09624 * 298.84446 * 23 6 5 25 25 H 1.08999 * 109.47465 * 299.86935 * 1 2 3 26 26 H 1.08998 * 109.47088 * 59.87406 * 1 2 3 27 27 H 1.09004 * 109.46945 * 179.87258 * 1 2 3 28 28 H 1.09005 * 109.46811 * 180.11999 * 3 2 1 29 29 H 1.08994 * 109.47453 * 300.12359 * 3 2 1 30 30 H 1.09007 * 109.46873 * 60.12966 * 3 2 1 31 31 H 1.08993 * 109.54792 * 57.01997 * 4 2 1 32 32 H 1.09003 * 109.54446 * 296.74921 * 4 2 1 33 33 H 1.08997 * 109.52002 * 183.11089 * 5 4 2 34 34 H 1.08998 * 109.52398 * 62.92304 * 5 4 2 35 35 H 1.08998 * 109.47000 * 59.99722 * 8 6 5 36 36 H 1.08997 * 109.47172 * 299.99907 * 8 6 5 37 37 H 1.09000 * 110.41111 * 40.26361 * 10 9 8 38 38 H 1.08989 * 110.41482 * 277.81625 * 10 9 8 39 39 H 1.09005 * 110.32720 * 217.25400 * 11 10 9 40 40 H 1.09003 * 110.32570 * 95.04509 * 11 10 9 41 41 H 0.97004 * 120.00453 * 179.97438 * 17 16 14 42 42 H 1.08998 * 110.41528 * 82.17831 * 22 9 8 43 43 H 1.08997 * 110.50874 * 319.78619 * 22 9 8 44 44 H 1.08999 * 109.47837 * 301.17057 * 24 23 6 45 45 H 1.08999 * 109.48134 * 181.13908 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0418 -0.7247 1.2486 5 6 3.5716 -0.7865 1.1986 6 6 4.0043 -1.4816 -0.0950 7 1 3.6317 -2.5060 -0.0994 8 6 5.5319 -1.4939 -0.1812 9 7 5.9469 -2.1614 -1.4221 10 6 5.3038 -1.5337 -2.6051 11 6 6.2010 -1.9366 -3.7951 12 6 7.5816 -2.2330 -3.1739 13 1 7.8640 -3.2698 -3.3563 14 6 8.6210 -1.2991 -3.7385 15 1 9.1502 -0.6216 -3.0849 16 6 8.8962 -1.3097 -5.0894 17 7 9.8036 -0.4951 -5.5821 18 14 7.9803 -2.4811 -6.2202 19 1 6.7518 -1.8195 -6.7282 20 1 8.8533 -2.8492 -7.3636 21 1 7.6078 -3.7058 -5.4674 22 6 7.4025 -1.9842 -1.6609 23 8 3.4694 -0.7749 -1.2159 24 6 2.0417 -0.7255 -1.2472 25 1 -0.3634 0.5118 0.8911 26 1 -0.3633 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0023 28 1 3.1313 1.4411 -0.0022 29 1 1.6765 1.9569 -0.8888 30 1 1.6802 1.9555 0.8912 31 1 1.6367 -1.7362 1.2750 32 1 1.7279 -0.1814 2.1400 33 1 3.9416 -1.3490 2.0558 34 1 3.9780 0.2246 1.2223 35 1 5.9397 -2.0321 0.6744 36 1 5.9043 -0.4695 -0.1772 37 1 5.2823 -0.4494 -2.4954 38 1 4.2950 -1.9231 -2.7408 39 1 6.2752 -1.1156 -4.5084 40 1 5.8059 -2.8280 -4.2824 41 1 9.9975 -0.5028 -6.5325 42 1 7.9736 -2.7129 -1.0856 43 1 7.7112 -0.9712 -1.4030 44 1 1.6432 -1.7398 -1.2668 45 1 1.7159 -0.1896 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713553839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:36 Heat of formation + Delta-G solvation = -74.881286 kcal Electronic energy + Delta-G solvation = -21850.032935 eV Core-core repulsion = 18865.915254 eV Total energy + Delta-G solvation = -2984.117681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11997 -39.52047 -36.38555 -35.12044 -33.97274 -32.26847 -29.96481 -28.79580 -28.17835 -26.74372 -25.99185 -24.06185 -22.70114 -21.74516 -21.15748 -19.77068 -18.66290 -17.41443 -17.08218 -16.66978 -16.32857 -15.91164 -15.67020 -15.37264 -14.98343 -14.84069 -14.66244 -14.40642 -13.92389 -13.56523 -13.31982 -13.04565 -12.97577 -12.88693 -12.79111 -12.64546 -12.40695 -12.30430 -12.12171 -11.95658 -11.81256 -11.69237 -11.61746 -11.36759 -11.21766 -10.99301 -10.94772 -10.73652 -10.12432 -9.35861 -8.30122 -6.33721 1.34412 1.36571 1.48382 2.35117 2.89957 3.04937 3.15175 3.70623 3.81900 3.85179 4.01439 4.06815 4.12284 4.20562 4.33968 4.41698 4.46001 4.59457 4.62979 4.67829 4.69974 4.76531 4.79948 4.82081 4.89430 4.91220 4.94459 4.99357 5.05423 5.07743 5.15205 5.18065 5.24785 5.29143 5.32006 5.33203 5.43092 5.54541 5.58066 5.66069 5.95606 6.21446 6.33394 6.41232 6.72101 7.31796 8.86607 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032444 B = 0.004571 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.811454 B = 6124.459043 C = 6424.788548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.105 4.105 5 C -0.144 4.144 6 C 0.097 3.903 7 H 0.065 0.935 8 C 0.050 3.950 9 N -0.514 5.514 10 C 0.074 3.926 11 C -0.138 4.138 12 C 0.007 3.993 13 H 0.031 0.969 14 C -0.517 4.517 15 H 0.030 0.970 16 C 0.014 3.986 17 N -0.951 5.951 18 Si 0.944 3.056 19 H -0.265 1.265 20 H -0.292 1.292 21 H -0.246 1.246 22 C 0.057 3.943 23 O -0.388 6.388 24 C 0.063 3.937 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.025 0.975 37 H 0.030 0.970 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.266 0.734 42 H 0.077 0.923 43 H 0.023 0.977 44 H 0.054 0.946 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 -1.642 14.267 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.143 4.143 5 C -0.183 4.183 6 C 0.039 3.961 7 H 0.083 0.917 8 C -0.078 4.078 9 N -0.238 5.238 10 C -0.054 4.054 11 C -0.177 4.177 12 C -0.012 4.012 13 H 0.050 0.950 14 C -0.555 4.555 15 H 0.049 0.951 16 C -0.183 4.183 17 N -0.592 5.592 18 Si 0.769 3.231 19 H -0.190 1.190 20 H -0.219 1.219 21 H -0.169 1.169 22 C -0.071 4.071 23 O -0.308 6.308 24 C -0.014 4.014 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.104 -2.064 14.058 25.441 hybrid contribution 0.479 0.825 -0.783 1.234 sum -20.625 -1.239 13.275 24.559 Atomic orbital electron populations 1.21759 0.92710 1.02348 1.02461 1.21174 0.96820 0.96045 0.95810 1.21787 1.00716 0.95084 1.01653 1.21637 0.94180 1.00905 0.97548 1.22166 0.97204 1.01535 0.97353 1.22073 0.92177 0.95354 0.86510 0.91661 1.22438 0.94474 0.97072 0.93859 1.65478 1.04711 1.51235 1.02364 1.22837 0.97385 0.96368 0.88766 1.22791 0.96948 0.99645 0.98268 1.19830 0.92492 0.95983 0.92895 0.95044 1.21336 1.20606 1.20208 0.93354 0.95138 1.25853 0.95655 0.96896 0.99850 1.70055 1.34994 1.40098 1.14030 0.85859 0.78499 0.80684 0.78088 1.19031 1.21853 1.16918 1.22940 0.88862 0.98550 0.96751 1.88165 1.20760 1.76639 1.45196 1.22748 0.80814 0.99681 0.98143 0.91630 0.92356 0.92010 0.93726 0.93042 0.91927 0.91129 0.90372 0.89475 0.91737 0.87997 0.95618 0.95120 0.89014 0.93597 0.92523 0.92536 0.90453 0.95907 0.92771 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.49 71.98 0.61 -1.07 16 2 C -0.10 -1.60 0.77 -52.09 -0.04 -1.64 16 3 C -0.14 -2.45 8.08 71.98 0.58 -1.87 16 4 C -0.11 -1.58 4.81 30.71 0.15 -1.43 16 5 C -0.14 -2.63 5.06 30.69 0.16 -2.48 16 6 C 0.10 2.31 2.76 30.63 0.08 2.39 16 7 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 8 C 0.05 1.44 4.94 86.31 0.43 1.87 16 9 N -0.51 -18.57 5.49 -881.51 -4.84 -23.41 16 10 C 0.07 2.83 4.64 86.45 0.40 3.23 16 11 C -0.14 -6.15 4.62 31.49 0.15 -6.00 16 12 C 0.01 0.36 2.51 -10.64 -0.03 0.34 16 13 H 0.03 1.55 7.28 -2.39 -0.02 1.53 16 14 C -0.52 -30.61 8.95 25.60 0.23 -30.38 16 15 H 0.03 1.99 7.82 -2.92 -0.02 1.97 16 16 C 0.01 0.86 5.34 84.65 0.45 1.31 16 17 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 18 Si 0.94 46.04 24.63 68.60 1.69 47.73 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.25 -11.22 6.49 99.48 0.65 -10.57 16 22 C 0.06 2.39 6.02 86.45 0.52 2.91 16 23 O -0.39 -10.40 5.77 -148.98 -0.86 -11.26 16 24 C 0.06 1.27 5.54 72.01 0.40 1.67 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 1.00 6.15 -2.38 -0.01 0.98 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.31 6.63 -2.39 -0.02 1.29 16 35 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.03 0.82 7.88 -2.39 -0.02 0.80 16 37 H 0.03 1.26 7.29 -2.39 -0.02 1.24 16 38 H 0.09 3.19 6.80 -2.39 -0.02 3.17 16 39 H 0.05 2.22 6.46 -2.38 -0.02 2.21 16 40 H 0.06 2.35 7.48 -2.39 -0.02 2.33 16 41 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 42 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.02 1.03 7.39 -2.39 -0.02 1.01 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -66.96 328.41 1.24 -65.72 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.86 Total: 13.04 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.09 Total: -31.14 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -4.54 Total: -84.08 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.86 Total: -11.26 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.69 Total: 47.73 kcal Total: -66.96 1.24 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.161 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds