Wall clock time and date at job start Mon Mar 30 2020 07:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.52743 * 2 1 4 4 C 1.53174 * 109.52385 * 239.81022 * 2 1 3 5 5 C 1.53171 * 109.04028 * 183.11812 * 4 2 1 6 6 C 1.53093 * 109.16504 * 56.97742 * 5 4 2 7 7 H 1.09002 * 109.48790 * 62.38255 * 6 5 4 8 8 C 1.53000 * 109.48145 * 182.40981 * 6 5 4 9 9 N 1.46906 * 109.47072 * 184.94598 * 8 6 5 10 10 C 1.47851 * 110.99786 * 290.84523 * 9 8 6 11 11 C 1.54904 * 104.79222 * 213.63429 * 10 9 8 12 12 C 1.55140 * 101.65465 * 37.07123 * 11 10 9 13 13 H 1.09006 * 110.70763 * 82.72736 * 12 11 10 14 14 C 1.50699 * 110.85584 * 205.89025 * 12 11 10 15 15 H 1.08004 * 119.99759 * 113.68600 * 14 12 11 16 16 C 1.37873 * 120.00183 * 293.68704 * 14 12 11 17 17 N 1.31514 * 120.00003 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00215 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47025 * 59.99530 * 18 16 14 20 20 H 1.48494 * 109.47190 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46552 * 300.00019 * 18 16 14 22 22 C 1.47436 * 110.99898 * 169.99968 * 9 8 6 23 23 O 1.42896 * 109.41615 * 302.39562 * 6 5 4 24 24 C 1.42909 * 114.10107 * 61.15560 * 23 6 5 25 25 H 1.08999 * 109.47059 * 299.87796 * 1 2 3 26 26 H 1.09007 * 109.46854 * 59.87129 * 1 2 3 27 27 H 1.09000 * 109.47498 * 179.87336 * 1 2 3 28 28 H 1.09000 * 109.47687 * 180.11989 * 3 2 1 29 29 H 1.08996 * 109.47271 * 300.13090 * 3 2 1 30 30 H 1.09006 * 109.47227 * 60.12537 * 3 2 1 31 31 H 1.09001 * 109.54630 * 302.98659 * 4 2 1 32 32 H 1.09003 * 109.54562 * 63.24793 * 4 2 1 33 33 H 1.09002 * 109.52581 * 297.07663 * 5 4 2 34 34 H 1.09004 * 109.52496 * 176.88747 * 5 4 2 35 35 H 1.08993 * 109.47007 * 64.94648 * 8 6 5 36 36 H 1.08996 * 109.47340 * 304.94454 * 8 6 5 37 37 H 1.08997 * 110.37354 * 332.46432 * 10 9 8 38 38 H 1.08994 * 110.37029 * 94.80655 * 10 9 8 39 39 H 1.08996 * 110.99203 * 278.97760 * 11 10 9 40 40 H 1.09008 * 110.98576 * 155.16124 * 11 10 9 41 41 H 0.96999 * 120.00216 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.88931 * 242.66034 * 22 9 8 43 43 H 1.09003 * 109.89178 * 3.85625 * 22 9 8 44 44 H 1.09005 * 109.47682 * 58.82018 * 24 23 6 45 45 H 1.09000 * 109.48439 * 178.85915 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0419 -0.7260 -1.2479 5 6 3.5715 -0.7879 -1.1977 6 6 4.0043 -1.4817 0.0966 7 1 3.6316 -2.5060 0.1023 8 6 5.5318 -1.4940 0.1828 9 7 5.9494 -2.2622 1.3633 10 6 5.5978 -1.5500 2.6104 11 6 6.7331 -1.9056 3.6025 12 6 7.9713 -1.9251 2.6679 13 1 8.3547 -0.9162 2.5149 14 6 9.0471 -2.8236 3.2213 15 1 9.3179 -3.7281 2.6968 16 6 9.6857 -2.4911 4.3971 17 7 9.3564 -1.3894 5.0354 18 14 11.0198 -3.6045 5.0827 19 1 12.1231 -3.7208 4.0956 20 1 11.5453 -3.0275 6.3460 21 1 10.4518 -4.9501 5.3510 22 6 7.4046 -2.4988 1.3520 23 8 3.4694 -0.7738 1.2167 24 6 2.0415 -0.7242 1.2481 25 1 -0.3633 0.5119 0.8911 26 1 -0.3633 0.5159 -0.8889 27 1 -0.3634 -1.0276 -0.0023 28 1 3.1314 1.4410 -0.0022 29 1 1.6767 1.9568 -0.8888 30 1 1.6804 1.9555 0.8911 31 1 1.6367 -1.7375 -1.2732 32 1 1.7280 -0.1837 -2.1398 33 1 3.9781 0.2232 -1.2224 34 1 3.9416 -1.3513 -2.0543 35 1 5.8992 -0.4713 0.2662 36 1 5.9427 -1.9556 -0.7150 37 1 5.5680 -0.4743 2.4376 38 1 4.6383 -1.9010 2.9901 39 1 6.5671 -2.8850 4.0511 40 1 6.8353 -1.1384 4.3701 41 1 9.8059 -1.1552 5.8624 42 1 7.6060 -3.5686 1.2969 43 1 7.8565 -1.9898 0.5007 44 1 1.6430 -1.7386 1.2686 45 1 1.7158 -0.1874 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713553840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:39 Heat of formation + Delta-G solvation = -65.211668 kcal Electronic energy + Delta-G solvation = -21578.988178 eV Core-core repulsion = 18595.289803 eV Total energy + Delta-G solvation = -2983.698375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02143 -37.81780 -35.28518 -33.41265 -32.39724 -30.27736 -28.07039 -27.44667 -27.31669 -25.65252 -24.30506 -22.88341 -21.39768 -19.77622 -19.37990 -18.88297 -16.48558 -16.17346 -15.73990 -15.22571 -15.09497 -14.46046 -14.40144 -14.10068 -13.67830 -13.21720 -12.95358 -12.68842 -12.36997 -12.32047 -12.09832 -12.04851 -11.95750 -11.56328 -11.28775 -11.07605 -10.95028 -10.90159 -10.86168 -10.61968 -10.55479 -10.40325 -10.23369 -9.85025 -9.51357 -9.22321 -9.12871 -8.77279 -8.31498 -7.46110 -5.95981 -3.98406 3.35988 3.40253 3.43061 3.93922 4.46044 4.49811 4.58362 4.61635 4.74263 5.06843 5.16864 5.23438 5.34399 5.37144 5.43326 5.47290 5.58581 5.63115 5.68447 5.69482 5.72324 5.82544 5.87666 5.90420 5.99944 6.03856 6.05092 6.21973 6.23277 6.36866 6.39552 6.42405 6.54540 6.84262 6.95900 7.27691 7.35566 7.45260 7.69411 7.75423 7.95639 7.98895 8.09413 8.49332 9.03223 9.64958 11.14074 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.003826 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.331907 B = 7317.089149 C = 7585.472206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.137 4.137 4 C -0.108 4.108 5 C -0.151 4.151 6 C 0.098 3.902 7 H 0.062 0.938 8 C 0.060 3.940 9 N -0.533 5.533 10 C 0.055 3.945 11 C -0.108 4.108 12 C 0.035 3.965 13 H 0.029 0.971 14 C -0.510 4.510 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.047 3.953 23 O -0.363 6.363 24 C 0.071 3.929 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.046 0.954 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.472 3.373 -11.394 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.194 4.194 4 C -0.146 4.146 5 C -0.190 4.190 6 C 0.039 3.961 7 H 0.080 0.920 8 C -0.069 4.069 9 N -0.257 5.257 10 C -0.073 4.073 11 C -0.147 4.147 12 C 0.015 3.985 13 H 0.047 0.953 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.080 4.080 23 O -0.281 6.281 24 C -0.006 4.006 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.561 3.090 -11.116 20.184 hybrid contribution 0.921 0.145 0.189 0.952 sum -15.640 3.235 -10.927 19.351 Atomic orbital electron populations 1.21792 0.94290 1.01722 1.01858 1.21214 0.95645 0.96807 0.96577 1.21806 1.02114 0.94357 1.01099 1.21628 0.95483 1.00245 0.97215 1.22239 0.95989 1.02148 0.98578 1.22122 0.94212 0.94703 0.85020 0.92000 1.22259 0.92449 0.96981 0.95219 1.63609 1.16035 1.44489 1.01611 1.23017 0.98807 0.95461 0.89988 1.22667 0.93994 1.00541 0.97482 1.19796 0.93054 0.96267 0.89345 0.95323 1.21057 1.18930 1.07518 1.07367 0.92594 1.24979 0.96919 0.95138 0.96903 1.69959 1.42118 1.23699 1.17106 0.86681 0.82198 0.81002 0.78235 1.20352 1.21393 1.20248 1.22985 0.85204 1.00697 0.99127 1.88084 1.18829 1.76017 1.45195 1.22570 0.82236 0.98924 0.96904 0.92494 0.92578 0.92676 0.91628 0.93186 0.92807 0.91957 0.91811 0.90949 0.91095 0.94551 0.90459 0.94564 0.91971 0.92843 0.91534 0.93070 0.91437 0.95113 0.93537 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.49 37.16 0.32 -0.79 16 2 C -0.10 -0.99 0.77 -154.37 -0.12 -1.11 16 3 C -0.14 -1.36 8.08 37.16 0.30 -1.06 16 4 C -0.11 -1.03 4.81 -26.55 -0.13 -1.16 16 5 C -0.15 -1.66 5.06 -26.59 -0.13 -1.79 16 6 C 0.10 1.35 2.84 -26.68 -0.08 1.28 16 7 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 8 C 0.06 0.97 4.42 -3.82 -0.02 0.96 16 9 N -0.53 -10.60 5.16 -231.25 -1.19 -11.79 16 10 C 0.05 1.14 5.07 -2.30 -0.01 1.13 16 11 C -0.11 -2.65 5.95 -24.59 -0.15 -2.80 16 12 C 0.03 0.90 2.77 -89.95 -0.25 0.65 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 14 C -0.51 -14.33 8.48 -34.44 -0.29 -14.63 16 15 H 0.06 1.54 7.53 -52.48 -0.40 1.15 16 16 C 0.06 1.76 5.36 -17.82 -0.10 1.67 16 17 N -0.89 -26.14 12.49 55.43 0.69 -25.44 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 C 0.05 1.03 6.45 -2.84 -0.02 1.01 16 23 O -0.36 -5.40 7.17 -35.23 -0.25 -5.65 16 24 C 0.07 0.83 5.54 37.21 0.21 1.03 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.76 6.14 -51.93 -0.32 0.44 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.82 6.62 -51.93 -0.34 0.48 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.63 7.85 -51.93 -0.41 0.22 16 36 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 37 H 0.04 0.77 7.21 -51.93 -0.37 0.39 16 38 H 0.06 1.26 7.60 -51.93 -0.39 0.86 16 39 H 0.05 1.36 8.05 -51.93 -0.42 0.95 16 40 H 0.07 1.74 7.76 -51.92 -0.40 1.34 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.07 1.52 7.63 -51.93 -0.40 1.12 16 43 H 0.03 0.63 7.55 -51.93 -0.39 0.24 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -29.20 337.75 -9.62 -38.82 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.47 Total: -2.04 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -0.47 Total: -15.61 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.50 Total: -37.24 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.25 Total: -5.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.20 -9.62 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.389 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds