Wall clock time and date at job start Mon Mar 30 2020 07:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.52743 * 2 1 4 4 C 1.53174 * 109.52385 * 239.81022 * 2 1 3 5 5 C 1.53171 * 109.04028 * 183.11812 * 4 2 1 6 6 C 1.53093 * 109.16504 * 56.97742 * 5 4 2 7 7 H 1.09002 * 109.48790 * 62.38255 * 6 5 4 8 8 C 1.53000 * 109.48145 * 182.40981 * 6 5 4 9 9 N 1.46906 * 109.47072 * 184.94598 * 8 6 5 10 10 C 1.47851 * 110.99786 * 290.84523 * 9 8 6 11 11 C 1.54904 * 104.79222 * 213.63429 * 10 9 8 12 12 C 1.55140 * 101.65465 * 37.07123 * 11 10 9 13 13 H 1.09006 * 110.70763 * 82.72736 * 12 11 10 14 14 C 1.50699 * 110.85584 * 205.89025 * 12 11 10 15 15 H 1.08004 * 119.99759 * 113.68600 * 14 12 11 16 16 C 1.37873 * 120.00183 * 293.68704 * 14 12 11 17 17 N 1.31514 * 120.00003 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00215 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47025 * 59.99530 * 18 16 14 20 20 H 1.48494 * 109.47190 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46552 * 300.00019 * 18 16 14 22 22 C 1.47436 * 110.99898 * 169.99968 * 9 8 6 23 23 O 1.42896 * 109.41615 * 302.39562 * 6 5 4 24 24 C 1.42909 * 114.10107 * 61.15560 * 23 6 5 25 25 H 1.08999 * 109.47059 * 299.87796 * 1 2 3 26 26 H 1.09007 * 109.46854 * 59.87129 * 1 2 3 27 27 H 1.09000 * 109.47498 * 179.87336 * 1 2 3 28 28 H 1.09000 * 109.47687 * 180.11989 * 3 2 1 29 29 H 1.08996 * 109.47271 * 300.13090 * 3 2 1 30 30 H 1.09006 * 109.47227 * 60.12537 * 3 2 1 31 31 H 1.09001 * 109.54630 * 302.98659 * 4 2 1 32 32 H 1.09003 * 109.54562 * 63.24793 * 4 2 1 33 33 H 1.09002 * 109.52581 * 297.07663 * 5 4 2 34 34 H 1.09004 * 109.52496 * 176.88747 * 5 4 2 35 35 H 1.08993 * 109.47007 * 64.94648 * 8 6 5 36 36 H 1.08996 * 109.47340 * 304.94454 * 8 6 5 37 37 H 1.08997 * 110.37354 * 332.46432 * 10 9 8 38 38 H 1.08994 * 110.37029 * 94.80655 * 10 9 8 39 39 H 1.08996 * 110.99203 * 278.97760 * 11 10 9 40 40 H 1.09008 * 110.98576 * 155.16124 * 11 10 9 41 41 H 0.96999 * 120.00216 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.88931 * 242.66034 * 22 9 8 43 43 H 1.09003 * 109.89178 * 3.85625 * 22 9 8 44 44 H 1.09005 * 109.47682 * 58.82018 * 24 23 6 45 45 H 1.09000 * 109.48439 * 178.85915 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0419 -0.7260 -1.2479 5 6 3.5715 -0.7879 -1.1977 6 6 4.0043 -1.4817 0.0966 7 1 3.6316 -2.5060 0.1023 8 6 5.5318 -1.4940 0.1828 9 7 5.9494 -2.2622 1.3633 10 6 5.5978 -1.5500 2.6104 11 6 6.7331 -1.9056 3.6025 12 6 7.9713 -1.9251 2.6679 13 1 8.3547 -0.9162 2.5149 14 6 9.0471 -2.8236 3.2213 15 1 9.3179 -3.7281 2.6968 16 6 9.6857 -2.4911 4.3971 17 7 9.3564 -1.3894 5.0354 18 14 11.0198 -3.6045 5.0827 19 1 12.1231 -3.7208 4.0956 20 1 11.5453 -3.0275 6.3460 21 1 10.4518 -4.9501 5.3510 22 6 7.4046 -2.4988 1.3520 23 8 3.4694 -0.7738 1.2167 24 6 2.0415 -0.7242 1.2481 25 1 -0.3633 0.5119 0.8911 26 1 -0.3633 0.5159 -0.8889 27 1 -0.3634 -1.0276 -0.0023 28 1 3.1314 1.4410 -0.0022 29 1 1.6767 1.9568 -0.8888 30 1 1.6804 1.9555 0.8911 31 1 1.6367 -1.7375 -1.2732 32 1 1.7280 -0.1837 -2.1398 33 1 3.9781 0.2232 -1.2224 34 1 3.9416 -1.3513 -2.0543 35 1 5.8992 -0.4713 0.2662 36 1 5.9427 -1.9556 -0.7150 37 1 5.5680 -0.4743 2.4376 38 1 4.6383 -1.9010 2.9901 39 1 6.5671 -2.8850 4.0511 40 1 6.8353 -1.1384 4.3701 41 1 9.8059 -1.1552 5.8624 42 1 7.6060 -3.5686 1.2969 43 1 7.8565 -1.9898 0.5007 44 1 1.6430 -1.7386 1.2686 45 1 1.7158 -0.1874 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713553840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:39 Heat of formation + Delta-G solvation = -82.224815 kcal Electronic energy + Delta-G solvation = -21579.725923 eV Core-core repulsion = 18595.289803 eV Total energy + Delta-G solvation = -2984.436121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01773 -39.46498 -36.30824 -35.10374 -33.83153 -31.84159 -29.96296 -28.57076 -28.16356 -26.67735 -26.14807 -24.08056 -22.52064 -21.55352 -21.25635 -19.74543 -18.56187 -17.26753 -16.85966 -16.76300 -16.38167 -15.95271 -15.66378 -15.16310 -14.90504 -14.55659 -14.41649 -14.15664 -13.66334 -13.59384 -13.25334 -13.03691 -12.95145 -12.89097 -12.78318 -12.64987 -12.58930 -12.37653 -12.20570 -12.07157 -11.82692 -11.67477 -11.49570 -11.30199 -11.14166 -10.97193 -10.90106 -10.48510 -10.14347 -9.12935 -8.13220 -6.23528 1.41863 1.44064 1.51583 2.43470 2.93515 3.15579 3.18157 3.73697 3.85465 3.86349 4.06281 4.14941 4.21850 4.24729 4.40920 4.44850 4.56315 4.62716 4.65263 4.69143 4.71825 4.77095 4.82371 4.83892 4.93079 4.96281 5.02090 5.03495 5.07084 5.09477 5.16348 5.26165 5.29771 5.33633 5.41237 5.44042 5.56042 5.58179 5.72528 5.88258 6.18601 6.32346 6.36920 6.46506 6.85433 7.43856 8.96379 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.003826 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.331907 B = 7317.089149 C = 7585.472206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.105 4.105 5 C -0.145 4.145 6 C 0.102 3.898 7 H 0.059 0.941 8 C 0.057 3.943 9 N -0.533 5.533 10 C 0.076 3.924 11 C -0.101 4.101 12 C 0.026 3.974 13 H -0.004 1.004 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.058 3.942 23 O -0.391 6.391 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.025 0.975 36 H 0.097 0.903 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.622 2.690 -12.885 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.192 4.192 4 C -0.143 4.143 5 C -0.183 4.183 6 C 0.044 3.956 7 H 0.077 0.923 8 C -0.071 4.071 9 N -0.257 5.257 10 C -0.051 4.051 11 C -0.140 4.140 12 C 0.007 3.993 13 H 0.014 0.986 14 C -0.569 4.569 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.784 3.216 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.069 4.069 23 O -0.310 6.310 24 C -0.012 4.012 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.726 2.404 -12.627 21.896 hybrid contribution 1.266 0.399 0.661 1.482 sum -16.461 2.803 -11.966 20.542 Atomic orbital electron populations 1.21756 0.92640 1.02304 1.02540 1.21185 0.96875 0.96179 0.95678 1.21782 1.00763 0.94888 1.01742 1.21635 0.94161 1.00834 0.97645 1.22178 0.97246 1.01615 0.97268 1.22050 0.92252 0.94973 0.86349 0.92268 1.22422 0.94578 0.95913 0.94184 1.63612 1.14394 1.45236 1.02435 1.22764 0.97601 0.95203 0.89572 1.22477 0.95291 0.98804 0.97457 1.19773 0.93293 0.94434 0.91813 0.98620 1.21423 1.19763 1.07898 1.07815 0.92431 1.25818 0.99227 0.96549 0.97213 1.70097 1.43256 1.25306 1.17426 0.85604 0.79358 0.79086 0.77576 1.19402 1.21036 1.19503 1.22774 0.86510 1.00266 0.97385 1.88026 1.20795 1.76249 1.45935 1.22742 0.80679 0.99524 0.98214 0.92263 0.91497 0.92154 0.93657 0.91803 0.92932 0.91350 0.90191 0.91497 0.89601 0.95665 0.88462 0.95056 0.90941 0.94272 0.94086 0.93065 0.91751 0.93801 0.93190 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.49 71.98 0.61 -1.16 16 2 C -0.10 -1.70 0.77 -52.09 -0.04 -1.74 16 3 C -0.13 -2.48 8.08 71.98 0.58 -1.89 16 4 C -0.11 -1.70 4.81 30.71 0.15 -1.56 16 5 C -0.14 -2.85 5.06 30.68 0.16 -2.70 16 6 C 0.10 2.67 2.84 30.63 0.09 2.76 16 7 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 8 C 0.06 1.80 4.42 86.30 0.38 2.18 16 9 N -0.53 -20.88 5.16 -885.55 -4.57 -25.45 16 10 C 0.08 3.21 5.07 86.77 0.44 3.65 16 11 C -0.10 -5.15 5.95 31.98 0.19 -4.95 16 12 C 0.03 1.39 2.77 -10.36 -0.03 1.36 16 13 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 14 C -0.53 -30.30 8.48 25.60 0.22 -30.08 16 15 H 0.06 3.19 7.53 -2.91 -0.02 3.17 16 16 C 0.01 0.61 5.36 84.65 0.45 1.06 16 17 N -0.92 -55.42 12.49 21.45 0.27 -55.15 16 18 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C 0.06 2.55 6.45 86.65 0.56 3.11 16 23 O -0.39 -11.31 7.17 -148.98 -1.07 -12.38 16 24 C 0.06 1.43 5.54 72.01 0.40 1.83 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 1.02 6.14 -2.39 -0.01 1.00 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.41 6.62 -2.39 -0.02 1.39 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.03 0.86 7.85 -2.39 -0.02 0.84 16 36 H 0.10 2.66 8.03 -2.39 -0.02 2.64 16 37 H 0.03 1.35 7.21 -2.39 -0.02 1.33 16 38 H 0.07 2.92 7.60 -2.39 -0.02 2.90 16 39 H 0.04 2.05 8.05 -2.39 -0.02 2.03 16 40 H 0.04 2.24 7.76 -2.38 -0.02 2.22 16 41 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 42 H 0.06 2.87 7.63 -2.39 -0.02 2.85 16 43 H 0.04 1.78 7.55 -2.39 -0.02 1.77 16 44 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -63.29 337.75 1.72 -61.56 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.92 Total: 12.91 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 4.15 Total: -28.14 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -4.30 Total: -80.60 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.07 Total: -12.38 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.29 1.72 -61.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.662 kcal (2) G-P(sol) polarization free energy of solvation -63.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds