Wall clock time and date at job start Mon Mar 30 2020 07:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.57137 * 2 1 4 4 C 1.53179 * 109.51332 * 239.83603 * 2 1 3 5 5 C 1.53175 * 109.04130 * 297.06184 * 4 2 1 6 6 C 1.53090 * 109.16368 * 303.02424 * 5 4 2 7 7 H 1.08999 * 109.48290 * 297.62719 * 6 5 4 8 8 C 1.53002 * 109.48022 * 177.59313 * 6 5 4 9 9 N 1.46892 * 109.47412 * 180.02562 * 8 6 5 10 10 C 1.48544 * 110.99865 * 52.60425 * 9 8 6 11 11 C 1.54937 * 103.22680 * 159.71858 * 10 9 8 12 12 C 1.54592 * 102.92260 * 322.59108 * 11 10 9 13 13 H 1.09005 * 110.39164 * 262.99530 * 12 11 10 14 14 C 1.50700 * 110.30871 * 140.87574 * 12 11 10 15 15 H 1.08008 * 119.99566 * 249.56113 * 14 12 11 16 16 C 1.37875 * 120.00275 * 69.55741 * 14 12 11 17 17 N 1.31513 * 119.99940 * 8.86561 * 16 14 12 18 18 Si 1.86800 * 120.00005 * 188.86030 * 16 14 12 19 19 H 1.48497 * 109.47156 * 94.97312 * 18 16 14 20 20 H 1.48503 * 109.47221 * 214.97651 * 18 16 14 21 21 H 1.48501 * 109.47167 * 334.97544 * 18 16 14 22 22 C 1.47896 * 111.00456 * 170.00151 * 9 8 6 23 23 O 1.42901 * 109.41343 * 57.61612 * 6 5 4 24 24 C 1.42907 * 114.09719 * 298.83689 * 23 6 5 25 25 H 1.08998 * 109.46910 * 299.84656 * 1 2 3 26 26 H 1.08997 * 109.46777 * 59.84317 * 1 2 3 27 27 H 1.08993 * 109.46869 * 179.84705 * 1 2 3 28 28 H 1.08997 * 109.47068 * 180.15627 * 3 2 1 29 29 H 1.09002 * 109.46985 * 300.15216 * 3 2 1 30 30 H 1.09000 * 109.47505 * 60.15045 * 3 2 1 31 31 H 1.08997 * 109.53248 * 177.19527 * 4 2 1 32 32 H 1.09000 * 109.61812 * 56.97757 * 4 2 1 33 33 H 1.09001 * 109.52032 * 183.12439 * 5 4 2 34 34 H 1.08994 * 109.52535 * 62.93674 * 5 4 2 35 35 H 1.08997 * 109.47251 * 300.06375 * 8 6 5 36 36 H 1.09006 * 109.46794 * 60.05946 * 8 6 5 37 37 H 1.08994 * 110.66895 * 278.16077 * 10 9 8 38 38 H 1.09001 * 110.66224 * 41.29097 * 10 9 8 39 39 H 1.08992 * 110.72269 * 204.22574 * 11 10 9 40 40 H 1.09000 * 110.87244 * 81.01756 * 11 10 9 41 41 H 0.97006 * 119.99783 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.91535 * 333.50972 * 22 9 8 43 43 H 1.09004 * 109.92211 * 94.60632 * 22 9 8 44 44 H 1.08997 * 109.48285 * 181.14352 * 24 23 6 45 45 H 1.09004 * 109.47837 * 301.16850 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0426 1.4416 0.0000 4 6 2.0417 -0.7255 -1.2483 5 6 1.5878 -2.1875 -1.1979 6 6 2.0974 -2.8277 0.0960 7 1 3.1873 -2.8194 0.1009 8 6 1.5975 -4.2711 0.1825 9 7 2.0860 -4.8850 1.4243 10 6 1.7496 -4.0444 2.6019 11 6 1.8429 -5.0393 3.7859 12 6 1.2738 -6.3454 3.1858 13 1 0.2210 -6.4558 3.4460 14 6 2.0604 -7.5331 3.6772 15 1 2.6945 -8.0804 2.9953 16 6 1.9709 -7.9210 4.9973 17 7 1.0733 -7.3702 5.7850 18 14 3.1243 -9.2289 5.6668 19 1 4.2949 -8.5762 6.3063 20 1 2.4071 -10.0539 6.6719 21 1 3.5880 -10.0964 4.5543 22 6 1.4344 -6.1913 1.6620 23 8 1.6101 -2.0867 1.2165 24 6 2.0416 -0.7247 1.2477 25 1 -0.3633 0.5114 0.8913 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0027 28 1 3.1326 1.4397 -0.0028 29 1 1.6779 1.9569 -0.8886 30 1 1.6824 1.9554 0.8913 31 1 3.1306 -0.6824 -1.2742 32 1 1.6366 -0.2484 -2.1407 33 1 1.9942 -2.7249 -2.0547 34 1 0.4990 -2.2320 -1.2221 35 1 0.5076 -4.2791 0.1769 36 1 1.9693 -4.8362 -0.6724 37 1 2.4738 -3.2383 2.7186 38 1 0.7391 -3.6454 2.5135 39 1 1.2321 -4.7011 4.6229 40 1 2.8785 -5.1769 4.0969 41 1 1.0105 -7.6428 6.7138 42 1 0.4561 -6.2110 1.1816 43 1 2.0575 -6.9943 1.2682 44 1 1.6454 -0.2381 2.1389 45 1 3.1309 -0.6890 1.2679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713553841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:42 Heat of formation + Delta-G solvation = -59.828582 kcal Electronic energy + Delta-G solvation = -21710.746620 eV Core-core repulsion = 18727.281673 eV Total energy + Delta-G solvation = -2983.464947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10777 -37.78806 -35.30252 -33.43958 -32.39532 -30.34155 -28.00739 -27.46016 -27.31069 -25.69192 -24.27739 -22.86388 -21.48582 -19.90310 -19.27040 -18.88888 -16.51403 -16.20220 -15.73369 -15.24587 -15.06673 -14.41480 -14.35878 -14.19689 -13.77782 -13.22274 -13.04471 -12.68603 -12.40598 -12.31672 -12.11094 -12.01365 -11.93224 -11.51627 -11.34009 -11.11711 -10.99093 -10.88382 -10.80521 -10.52743 -10.49149 -10.39032 -10.23687 -9.88097 -9.54980 -9.13541 -9.09519 -8.69028 -8.27572 -7.55830 -5.93670 -3.92656 3.37037 3.43780 3.47322 3.90780 4.46775 4.52099 4.57205 4.60568 4.72393 5.05507 5.14480 5.18039 5.31832 5.39534 5.42249 5.46145 5.55704 5.61854 5.66530 5.68919 5.71391 5.80777 5.86131 5.90527 5.97243 6.02838 6.05007 6.19151 6.21559 6.35571 6.36127 6.41057 6.57253 6.85073 6.98946 7.25452 7.36576 7.41110 7.60926 7.72166 7.93847 8.01100 8.14470 8.55942 9.09064 9.69041 11.17025 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041224 B = 0.004017 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.052816 B = 6968.504539 C = 7226.006657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.150 4.150 6 C 0.093 3.907 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.518 5.518 10 C 0.051 3.949 11 C -0.104 4.104 12 C 0.039 3.961 13 H 0.035 0.965 14 C -0.506 4.506 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.274 1.274 22 C 0.045 3.955 23 O -0.360 6.360 24 C 0.067 3.933 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.258 0.742 42 H 0.018 0.982 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 15.997 -13.151 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.188 4.188 6 C 0.035 3.965 7 H 0.081 0.919 8 C -0.074 4.074 9 N -0.243 5.243 10 C -0.076 4.076 11 C -0.143 4.143 12 C 0.020 3.980 13 H 0.053 0.947 14 C -0.544 4.544 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.082 4.082 23 O -0.278 6.278 24 C -0.010 4.010 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.947 15.836 -12.895 20.444 hybrid contribution -0.125 -0.404 0.247 0.490 sum 0.823 15.431 -12.649 19.970 Atomic orbital electron populations 1.21806 0.93906 1.02534 1.01114 1.21209 0.96834 0.95613 0.96537 1.21791 1.00874 0.95140 1.01864 1.21631 1.00540 0.95190 0.97239 1.22221 1.02159 0.95949 0.98477 1.22108 0.97969 0.91135 0.85302 0.91947 1.22301 0.97689 0.92017 0.95392 1.64822 1.54501 1.03732 1.01216 1.23261 0.98576 0.95234 0.90533 1.22561 1.00837 0.95561 0.95352 1.19498 0.97144 0.93666 0.87715 0.94691 1.21194 1.26030 1.12573 0.94626 0.92533 1.24972 0.95208 0.96448 0.97320 1.69990 1.33048 1.43760 1.06170 0.86654 0.81256 0.81726 0.78806 1.20771 1.21466 1.19913 1.23089 0.94767 0.90288 1.00082 1.88263 1.74152 1.20964 1.44447 1.22590 0.98218 0.83217 0.96975 0.92791 0.93190 0.91675 0.92662 0.92588 0.92474 0.91951 0.91795 0.91072 0.90951 0.94777 0.90336 0.91203 0.94516 0.92976 0.92470 0.93193 0.96393 0.91378 0.89235 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.08 37.16 0.30 -1.04 16 2 C -0.10 -0.98 0.78 -154.36 -0.12 -1.09 16 3 C -0.14 -1.10 8.49 37.16 0.32 -0.79 16 4 C -0.11 -1.02 4.81 -26.55 -0.13 -1.15 16 5 C -0.15 -1.61 5.05 -26.59 -0.13 -1.74 16 6 C 0.09 1.27 2.73 -26.68 -0.07 1.19 16 7 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 8 C 0.05 0.88 4.91 -3.83 -0.02 0.86 16 9 N -0.52 -10.37 5.40 -230.45 -1.24 -11.62 16 10 C 0.05 1.05 4.65 -1.89 -0.01 1.04 16 11 C -0.10 -2.55 6.32 -24.87 -0.16 -2.70 16 12 C 0.04 1.01 2.76 -90.42 -0.25 0.76 16 13 H 0.03 0.99 8.07 -51.93 -0.42 0.57 16 14 C -0.51 -14.33 8.30 -34.44 -0.29 -14.62 16 15 H 0.06 1.59 7.38 -52.48 -0.39 1.20 16 16 C 0.06 1.76 5.32 -17.82 -0.09 1.67 16 17 N -0.89 -26.41 13.11 55.43 0.73 -25.68 16 18 Si 0.89 21.84 29.55 -169.99 -5.02 16.82 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.04 1.00 6.34 -2.76 -0.02 0.98 16 23 O -0.36 -5.26 5.68 -35.23 -0.20 -5.46 16 24 C 0.07 0.78 5.54 37.20 0.21 0.98 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.74 6.13 -51.93 -0.32 0.43 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 35 H 0.03 0.56 7.81 -51.93 -0.41 0.16 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.37 6.84 -51.93 -0.36 1.02 16 38 H 0.04 0.76 7.23 -51.93 -0.38 0.39 16 39 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.47 7.85 -51.93 -0.41 1.07 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 43 H 0.07 1.54 7.41 -51.93 -0.38 1.15 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -29.58 336.21 -9.56 -39.14 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.42 Total: -2.62 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.47 Total: -15.65 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.52 Total: -37.30 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.20 Total: -5.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.58 -9.56 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.687 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds