Wall clock time and date at job start Mon Mar 30 2020 07:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.57137 * 2 1 4 4 C 1.53179 * 109.51332 * 239.83603 * 2 1 3 5 5 C 1.53175 * 109.04130 * 297.06184 * 4 2 1 6 6 C 1.53090 * 109.16368 * 303.02424 * 5 4 2 7 7 H 1.08999 * 109.48290 * 297.62719 * 6 5 4 8 8 C 1.53002 * 109.48022 * 177.59313 * 6 5 4 9 9 N 1.46892 * 109.47412 * 180.02562 * 8 6 5 10 10 C 1.48544 * 110.99865 * 52.60425 * 9 8 6 11 11 C 1.54937 * 103.22680 * 159.71858 * 10 9 8 12 12 C 1.54592 * 102.92260 * 322.59108 * 11 10 9 13 13 H 1.09005 * 110.39164 * 262.99530 * 12 11 10 14 14 C 1.50700 * 110.30871 * 140.87574 * 12 11 10 15 15 H 1.08008 * 119.99566 * 249.56113 * 14 12 11 16 16 C 1.37875 * 120.00275 * 69.55741 * 14 12 11 17 17 N 1.31513 * 119.99940 * 8.86561 * 16 14 12 18 18 Si 1.86800 * 120.00005 * 188.86030 * 16 14 12 19 19 H 1.48497 * 109.47156 * 94.97312 * 18 16 14 20 20 H 1.48503 * 109.47221 * 214.97651 * 18 16 14 21 21 H 1.48501 * 109.47167 * 334.97544 * 18 16 14 22 22 C 1.47896 * 111.00456 * 170.00151 * 9 8 6 23 23 O 1.42901 * 109.41343 * 57.61612 * 6 5 4 24 24 C 1.42907 * 114.09719 * 298.83689 * 23 6 5 25 25 H 1.08998 * 109.46910 * 299.84656 * 1 2 3 26 26 H 1.08997 * 109.46777 * 59.84317 * 1 2 3 27 27 H 1.08993 * 109.46869 * 179.84705 * 1 2 3 28 28 H 1.08997 * 109.47068 * 180.15627 * 3 2 1 29 29 H 1.09002 * 109.46985 * 300.15216 * 3 2 1 30 30 H 1.09000 * 109.47505 * 60.15045 * 3 2 1 31 31 H 1.08997 * 109.53248 * 177.19527 * 4 2 1 32 32 H 1.09000 * 109.61812 * 56.97757 * 4 2 1 33 33 H 1.09001 * 109.52032 * 183.12439 * 5 4 2 34 34 H 1.08994 * 109.52535 * 62.93674 * 5 4 2 35 35 H 1.08997 * 109.47251 * 300.06375 * 8 6 5 36 36 H 1.09006 * 109.46794 * 60.05946 * 8 6 5 37 37 H 1.08994 * 110.66895 * 278.16077 * 10 9 8 38 38 H 1.09001 * 110.66224 * 41.29097 * 10 9 8 39 39 H 1.08992 * 110.72269 * 204.22574 * 11 10 9 40 40 H 1.09000 * 110.87244 * 81.01756 * 11 10 9 41 41 H 0.97006 * 119.99783 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.91535 * 333.50972 * 22 9 8 43 43 H 1.09004 * 109.92211 * 94.60632 * 22 9 8 44 44 H 1.08997 * 109.48285 * 181.14352 * 24 23 6 45 45 H 1.09004 * 109.47837 * 301.16850 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0426 1.4416 0.0000 4 6 2.0417 -0.7255 -1.2483 5 6 1.5878 -2.1875 -1.1979 6 6 2.0974 -2.8277 0.0960 7 1 3.1873 -2.8194 0.1009 8 6 1.5975 -4.2711 0.1825 9 7 2.0860 -4.8850 1.4243 10 6 1.7496 -4.0444 2.6019 11 6 1.8429 -5.0393 3.7859 12 6 1.2738 -6.3454 3.1858 13 1 0.2210 -6.4558 3.4460 14 6 2.0604 -7.5331 3.6772 15 1 2.6945 -8.0804 2.9953 16 6 1.9709 -7.9210 4.9973 17 7 1.0733 -7.3702 5.7850 18 14 3.1243 -9.2289 5.6668 19 1 4.2949 -8.5762 6.3063 20 1 2.4071 -10.0539 6.6719 21 1 3.5880 -10.0964 4.5543 22 6 1.4344 -6.1913 1.6620 23 8 1.6101 -2.0867 1.2165 24 6 2.0416 -0.7247 1.2477 25 1 -0.3633 0.5114 0.8913 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0027 28 1 3.1326 1.4397 -0.0028 29 1 1.6779 1.9569 -0.8886 30 1 1.6824 1.9554 0.8913 31 1 3.1306 -0.6824 -1.2742 32 1 1.6366 -0.2484 -2.1407 33 1 1.9942 -2.7249 -2.0547 34 1 0.4990 -2.2320 -1.2221 35 1 0.5076 -4.2791 0.1769 36 1 1.9693 -4.8362 -0.6724 37 1 2.4738 -3.2383 2.7186 38 1 0.7391 -3.6454 2.5135 39 1 1.2321 -4.7011 4.6229 40 1 2.8785 -5.1769 4.0969 41 1 1.0105 -7.6428 6.7138 42 1 0.4561 -6.2110 1.1816 43 1 2.0575 -6.9943 1.2682 44 1 1.6454 -0.2381 2.1389 45 1 3.1309 -0.6890 1.2679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713553841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:42 Heat of formation + Delta-G solvation = -77.234751 kcal Electronic energy + Delta-G solvation = -21711.501408 eV Core-core repulsion = 18727.281673 eV Total energy + Delta-G solvation = -2984.219735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10698 -39.39615 -36.34356 -35.08523 -33.86068 -31.89731 -29.88513 -28.55934 -28.16725 -26.69361 -26.14031 -24.06336 -22.61786 -21.52696 -21.19718 -19.76876 -18.57737 -17.33522 -16.87729 -16.66811 -16.31497 -15.99616 -15.65923 -15.27770 -14.85167 -14.68808 -14.46909 -13.97544 -13.74753 -13.65606 -13.13109 -13.02759 -12.99724 -12.92078 -12.77741 -12.58833 -12.52685 -12.36611 -12.12947 -12.03673 -11.84397 -11.68442 -11.49703 -11.30023 -11.14063 -10.94625 -10.83331 -10.48309 -10.09488 -9.19667 -8.13227 -6.19687 1.41256 1.42917 1.53370 2.44654 2.90887 3.15624 3.22525 3.71773 3.83394 3.85834 4.05047 4.13887 4.22105 4.25282 4.43435 4.46049 4.53303 4.62631 4.66520 4.70854 4.72810 4.79062 4.82099 4.84011 4.92790 4.95618 5.02653 5.06111 5.07243 5.13760 5.16431 5.25028 5.28033 5.33412 5.43680 5.44234 5.55756 5.58504 5.70098 5.85017 6.19559 6.33430 6.40464 6.43110 6.88953 7.45813 8.97571 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041224 B = 0.004017 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.052816 B = 6968.504539 C = 7226.006657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.143 4.143 6 C 0.096 3.904 7 H 0.059 0.941 8 C 0.053 3.947 9 N -0.524 5.524 10 C 0.075 3.925 11 C -0.099 4.099 12 C 0.030 3.970 13 H 0.000 1.000 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.056 3.944 23 O -0.386 6.386 24 C 0.062 3.938 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.038 0.962 41 H 0.260 0.740 42 H 0.028 0.972 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 16.996 -14.843 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.143 4.143 5 C -0.181 4.181 6 C 0.038 3.962 7 H 0.077 0.923 8 C -0.075 4.075 9 N -0.248 5.248 10 C -0.052 4.052 11 C -0.138 4.138 12 C 0.011 3.989 13 H 0.018 0.982 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.072 4.072 23 O -0.306 6.306 24 C -0.015 4.015 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.951 16.844 -14.608 22.381 hybrid contribution -0.477 -0.695 0.775 1.145 sum 1.473 16.149 -13.833 21.314 Atomic orbital electron populations 1.21780 0.94190 1.01454 1.01717 1.21178 0.96530 0.96494 0.95656 1.21757 1.01147 0.93855 1.02517 1.21636 1.00915 0.94129 0.97630 1.22155 1.01872 0.96914 0.97154 1.22062 0.97638 0.89850 0.86632 0.92288 1.22450 0.97547 0.93771 0.93743 1.64782 1.54625 1.02873 1.02526 1.23017 0.98836 0.94313 0.89079 1.22389 0.98881 0.96208 0.96282 1.19476 0.94808 0.93929 0.90680 0.98162 1.21518 1.26281 1.13382 0.95104 0.92702 1.25780 0.96562 0.98791 0.97569 1.70114 1.34454 1.45288 1.06453 0.85592 0.79071 0.79075 0.78238 1.20234 1.20930 1.18983 1.22842 0.95465 0.91664 0.97208 1.88180 1.74574 1.22602 1.45230 1.22750 0.98453 0.82016 0.98254 0.92989 0.91818 0.93545 0.92208 0.91501 0.92306 0.91434 0.90182 0.89569 0.91364 0.95191 0.88430 0.89940 0.94707 0.94986 0.94337 0.93079 0.95414 0.91720 0.89204 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.08 71.98 0.58 -1.83 16 2 C -0.10 -1.66 0.78 -52.09 -0.04 -1.70 16 3 C -0.14 -1.78 8.49 71.98 0.61 -1.16 16 4 C -0.11 -1.67 4.81 30.71 0.15 -1.52 16 5 C -0.14 -2.70 5.05 30.68 0.16 -2.55 16 6 C 0.10 2.45 2.73 30.63 0.08 2.53 16 7 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 8 C 0.05 1.62 4.91 86.31 0.42 2.04 16 9 N -0.52 -20.62 5.40 -883.01 -4.76 -25.38 16 10 C 0.07 3.08 4.65 86.65 0.40 3.48 16 11 C -0.10 -4.97 6.32 31.80 0.20 -4.77 16 12 C 0.03 1.62 2.76 -10.66 -0.03 1.59 16 13 H 0.00 0.01 8.07 -2.38 -0.02 -0.01 16 14 C -0.52 -30.30 8.30 25.60 0.21 -30.09 16 15 H 0.05 3.11 7.38 -2.91 -0.02 3.09 16 16 C 0.01 0.66 5.32 84.65 0.45 1.11 16 17 N -0.92 -56.06 13.11 21.45 0.28 -55.78 16 18 Si 0.95 45.14 29.55 68.60 2.03 47.17 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 C 0.06 2.49 6.34 86.45 0.55 3.04 16 23 O -0.39 -10.88 5.68 -148.98 -0.85 -11.73 16 24 C 0.06 1.34 5.54 72.01 0.40 1.74 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 1.01 6.13 -2.39 -0.01 0.99 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.37 6.62 -2.39 -0.02 1.35 16 35 H 0.03 0.95 7.81 -2.39 -0.02 0.93 16 36 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 37 H 0.08 3.21 6.84 -2.39 -0.02 3.19 16 38 H 0.03 1.45 7.23 -2.39 -0.02 1.43 16 39 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 2.03 7.85 -2.39 -0.02 2.02 16 41 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 42 H 0.03 1.16 7.57 -2.38 -0.02 1.14 16 43 H 0.06 2.91 7.41 -2.39 -0.02 2.90 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -64.10 336.21 1.76 -62.34 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.92 Total: 11.46 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 4.15 Total: -28.09 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -4.48 Total: -81.16 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.85 Total: -11.73 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.10 1.76 -62.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.896 kcal (2) G-P(sol) polarization free energy of solvation -64.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds