Wall clock time and date at job start Mon Mar 30 2020 07:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.57676 * 2 1 4 4 C 1.53178 * 109.52292 * 239.84106 * 2 1 3 5 5 C 1.53176 * 109.03919 * 183.11045 * 4 2 1 6 6 C 1.53095 * 109.16064 * 56.98640 * 5 4 2 7 7 H 1.08995 * 109.48271 * 62.37223 * 6 5 4 8 8 C 1.52997 * 109.48313 * 182.40804 * 6 5 4 9 9 N 1.46895 * 109.47373 * 180.23044 * 8 6 5 10 10 C 1.47906 * 110.99829 * 175.81341 * 9 8 6 11 11 C 1.53997 * 107.05802 * 214.15504 * 10 9 8 12 12 C 1.54601 * 105.13804 * 1.22727 * 11 10 9 13 13 H 1.08993 * 110.72229 * 263.41534 * 12 11 10 14 14 C 1.50696 * 110.72115 * 140.31223 * 12 11 10 15 15 H 1.08003 * 120.00220 * 241.45250 * 14 12 11 16 16 C 1.37884 * 120.00032 * 61.45478 * 14 12 11 17 17 N 1.31518 * 119.99980 * 359.97438 * 16 14 12 18 18 Si 1.86791 * 119.99997 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47526 * 89.99925 * 18 16 14 20 20 H 1.48504 * 109.47085 * 210.00107 * 18 16 14 21 21 H 1.48497 * 109.47540 * 329.99798 * 18 16 14 22 22 C 1.48534 * 110.99723 * 58.42077 * 9 8 6 23 23 O 1.42902 * 109.41121 * 302.38661 * 6 5 4 24 24 C 1.42903 * 114.09910 * 61.16409 * 23 6 5 25 25 H 1.09003 * 109.47039 * 299.83771 * 1 2 3 26 26 H 1.08996 * 109.47460 * 59.84281 * 1 2 3 27 27 H 1.09007 * 109.47002 * 179.84676 * 1 2 3 28 28 H 1.08996 * 109.47067 * 180.15928 * 3 2 1 29 29 H 1.09005 * 109.46628 * 300.15940 * 3 2 1 30 30 H 1.09000 * 109.47141 * 60.15590 * 3 2 1 31 31 H 1.09001 * 109.54335 * 302.98492 * 4 2 1 32 32 H 1.08998 * 109.54040 * 63.24239 * 4 2 1 33 33 H 1.08996 * 109.52725 * 297.08103 * 5 4 2 34 34 H 1.09000 * 109.52045 * 176.88444 * 5 4 2 35 35 H 1.08998 * 109.47066 * 300.23640 * 8 6 5 36 36 H 1.09003 * 109.47235 * 60.22820 * 8 6 5 37 37 H 1.08995 * 109.92051 * 333.50851 * 10 9 8 38 38 H 1.08998 * 109.91554 * 94.60807 * 10 9 8 39 39 H 1.09001 * 110.30772 * 120.14163 * 11 10 9 40 40 H 1.08996 * 110.30826 * 242.21344 * 11 10 9 41 41 H 0.96996 * 119.99951 * 180.02562 * 17 16 14 42 42 H 1.08995 * 110.66304 * 278.15041 * 22 9 8 43 43 H 1.08998 * 110.66943 * 41.28574 * 22 9 8 44 44 H 1.09000 * 109.48645 * 178.85485 * 24 23 6 45 45 H 1.08997 * 109.49385 * 58.82457 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0426 1.4415 0.0000 4 6 2.0418 -0.7253 -1.2483 5 6 3.5715 -0.7871 -1.1983 6 6 4.0043 -1.4817 0.0956 7 1 3.6315 -2.5059 0.1006 8 6 5.5318 -1.4940 0.1819 9 7 5.9469 -2.1654 1.4207 10 6 7.4195 -2.2851 1.4908 11 6 7.7312 -3.6118 2.2080 12 6 6.3519 -4.2428 2.5072 13 1 6.0360 -4.0146 3.5251 14 6 6.3872 -5.7326 2.2832 15 1 5.7482 -6.1819 1.5373 16 6 7.2353 -6.5222 3.0305 17 7 8.0137 -5.9751 3.9384 18 14 7.2785 -8.3689 2.7533 19 1 8.2936 -8.6906 1.7183 20 1 7.6331 -9.0519 4.0234 21 1 5.9433 -8.8326 2.2981 22 6 5.4247 -3.5548 1.4738 23 8 3.4695 -0.7743 1.2162 24 6 2.0416 -0.7249 1.2476 25 1 -0.3633 0.5113 0.8915 26 1 -0.3634 0.5162 -0.8885 27 1 -0.3633 -1.0277 -0.0027 28 1 3.1325 1.4395 -0.0029 29 1 1.6778 1.9568 -0.8886 30 1 1.6825 1.9552 0.8914 31 1 1.6366 -1.7369 -1.2741 32 1 1.7278 -0.1825 -2.1398 33 1 3.9780 0.2239 -1.2224 34 1 3.9415 -1.3501 -2.0551 35 1 5.9398 -2.0290 -0.6757 36 1 5.9040 -0.4695 0.1815 37 1 7.8392 -2.2993 0.4850 38 1 7.8336 -1.4489 2.0541 39 1 8.3133 -4.2653 1.5584 40 1 8.2714 -3.4225 3.1355 41 1 8.6106 -6.5305 4.4639 42 1 4.3907 -3.5642 1.8186 43 1 5.5109 -4.0358 0.4995 44 1 1.7159 -0.1886 2.1389 45 1 1.6430 -1.7392 1.2678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713553843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:45 Heat of formation + Delta-G solvation = -63.938488 kcal Electronic energy + Delta-G solvation = -21558.600186 eV Core-core repulsion = 18574.957020 eV Total energy + Delta-G solvation = -2983.643166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97869 -37.86626 -35.24606 -33.45764 -32.39314 -30.32294 -28.26280 -27.42069 -27.06859 -25.59793 -24.54556 -22.90394 -21.37467 -19.84861 -19.47589 -18.68882 -16.32513 -16.19803 -15.68831 -15.12804 -14.90971 -14.76185 -14.40271 -14.21093 -13.74755 -13.37303 -12.88385 -12.63485 -12.44878 -12.34019 -12.10291 -12.03658 -11.90680 -11.79003 -11.18048 -11.10462 -11.04376 -11.01026 -10.81859 -10.62020 -10.45184 -10.37492 -10.13969 -9.94160 -9.58460 -9.18879 -9.09550 -8.71258 -8.35759 -7.60131 -5.98167 -4.01483 3.31645 3.38573 3.41554 3.96875 4.43948 4.50637 4.58915 4.65018 4.78221 5.07694 5.13604 5.22602 5.35101 5.38392 5.47167 5.49462 5.58193 5.62055 5.71221 5.72266 5.75738 5.82193 5.85633 5.90894 5.96987 5.98790 6.06792 6.14407 6.16273 6.24135 6.32593 6.38564 6.50966 6.61882 6.93626 7.22064 7.24777 7.49636 7.67241 7.73089 7.84406 7.95105 8.10191 8.49742 9.01086 9.62353 11.11597 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.004160 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.994255 B = 6729.725769 C = 7103.787312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.136 4.136 4 C -0.109 4.109 5 C -0.152 4.152 6 C 0.096 3.904 7 H 0.058 0.942 8 C 0.057 3.943 9 N -0.510 5.510 10 C 0.033 3.967 11 C -0.101 4.101 12 C 0.053 3.947 13 H 0.036 0.964 14 C -0.516 4.516 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.042 3.958 23 O -0.352 6.352 24 C 0.069 3.931 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.089 0.911 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.104 12.478 -9.761 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.193 4.193 4 C -0.147 4.147 5 C -0.190 4.190 6 C 0.037 3.963 7 H 0.076 0.924 8 C -0.072 4.072 9 N -0.234 5.234 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.034 3.966 13 H 0.054 0.946 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.525 5.525 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.085 4.085 23 O -0.270 6.270 24 C -0.008 4.008 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.108 0.892 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.041 12.843 -9.051 19.203 hybrid contribution 0.221 -1.606 -1.121 1.971 sum -10.820 11.237 -10.172 18.623 Atomic orbital electron populations 1.21792 0.94272 1.01812 1.01812 1.21223 0.95679 0.96776 0.96604 1.21802 1.02066 0.94386 1.01041 1.21637 0.95411 1.00373 0.97257 1.22251 0.96125 1.02085 0.98523 1.22120 0.93972 0.94848 0.85321 0.92380 1.22231 0.92735 0.99968 0.92294 1.64767 1.08322 1.17810 1.32528 1.22981 0.87943 1.00119 0.98399 1.22298 1.00567 0.92072 0.99002 1.19520 0.89541 0.93569 0.94005 0.94579 1.21106 1.22491 0.91640 1.20206 0.92748 1.24965 0.95548 0.98319 0.95013 1.69984 1.24492 1.35223 1.22817 0.86641 0.78280 0.85842 0.77499 1.20798 1.21234 1.19956 1.23351 0.99378 0.86530 0.99208 1.88086 1.18469 1.75591 1.44899 1.22591 0.82376 0.99012 0.96817 0.92479 0.92600 0.92611 0.91626 0.93231 0.92822 0.91905 0.91773 0.90856 0.91206 0.94146 0.90974 0.95684 0.92060 0.92874 0.92136 0.93076 0.92066 0.95191 0.89242 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.49 37.15 0.32 -0.86 16 2 C -0.10 -1.04 0.78 -154.37 -0.12 -1.16 16 3 C -0.14 -1.34 8.08 37.16 0.30 -1.04 16 4 C -0.11 -1.11 4.81 -26.55 -0.13 -1.24 16 5 C -0.15 -1.73 5.05 -26.59 -0.13 -1.87 16 6 C 0.10 1.40 2.41 -26.68 -0.06 1.34 16 7 H 0.06 0.92 6.89 -51.93 -0.36 0.56 16 8 C 0.06 0.92 4.53 -3.83 -0.02 0.90 16 9 N -0.51 -10.23 5.22 -230.45 -1.20 -11.44 16 10 C 0.03 0.68 6.70 -2.75 -0.02 0.66 16 11 C -0.10 -2.43 5.51 -25.37 -0.14 -2.57 16 12 C 0.05 1.36 2.99 -89.91 -0.27 1.09 16 13 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 14 C -0.52 -14.34 8.42 -34.44 -0.29 -14.63 16 15 H 0.05 1.49 7.78 -52.48 -0.41 1.08 16 16 C 0.06 1.78 5.33 -17.82 -0.10 1.68 16 17 N -0.89 -25.77 12.44 55.43 0.69 -25.08 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.04 0.93 4.76 -1.89 -0.01 0.92 16 23 O -0.35 -5.55 9.70 -35.23 -0.34 -5.90 16 24 C 0.07 0.86 5.54 37.21 0.21 1.07 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.74 6.13 -51.93 -0.32 0.42 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.82 6.62 -51.93 -0.34 0.48 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.64 7.97 -51.93 -0.41 0.22 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.47 7.67 -51.93 -0.40 0.07 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.35 7.84 -51.93 -0.41 0.94 16 40 H 0.06 1.54 8.05 -51.93 -0.42 1.12 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.06 1.33 7.65 -51.93 -0.40 0.93 16 43 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -29.17 340.28 -9.72 -38.89 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.50 Total: -2.29 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.46 Total: -15.69 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.51 Total: -36.52 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.34 Total: -5.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.17 -9.72 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713553843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.047 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds